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N Use By Plants
Nitrate Assimilation
Ammonia Assimilation
Glu, Gln, Asn, Gly, Ser
Aminotransferases
Asp, Ala, GABA
Val, Leu, Ileu, Thr, Lys
Pro, Arg, Orn
Polyamines
Non-protein AAs
Alkaloids
Sulfate Assimilation
Cys, Met, AdoMet, ACC
His, Phe, Tyr, Tryp
Secondary Products
Onium Compounds
Enzymes
Methods
Simulation
References
HORT640 - Metabolic Plant Physiology

References, Arabidopsis

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Aarts MG, Hodge R, Kalantidis K, Florack D, Wilson ZA, Mulligan BJ, Stiekema WJ, Scott R, Pereira A 1997 The Arabidopsis MALE STERILITY 2 protein shares similarity with reductases in elongation/condensation complexes. Plant J. 12: 615-623.

Aarts MG, Keijzer CJ, Stiekema WJ, Pereira A 1995 Molecular characterization of the CER1 gene of Arabidopsis involved in epicuticular wax biosynthesis and pollen fertility. Plant Cell 7: 2115-2127.

Abdel-Ghany SE, Burkhead JL, Gogolin KA, Andres-Colas N, Bodecker JR, Puig S, Penarrubia L, Pilon M 2005 AtCCS is a functional homolog of the yeast copper chaperone Ccs1/Lys7. FEBS Lett. 579: 2307-2312.

Abdel-Ghany SE, Muller-Moule P, Niyogi KK, Pilon M, Shikanai T 2005 Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. Plant Cell 17: 1233-1251.

Abdel-Ghany SE, Ye H, Garifullina GF, Zhang L, Pilon-Smits EA, Pilon M 2005 Iron-sulfur cluster biogenesis in chloroplasts. Involvement of the scaffold protein CpIsca. Plant Physiol. 138: 161-172.

Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D 2006 A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol. 140: 30-48.

Abe H, Ohnishi J, Narusaka M, Seo S, Narusaka Y, Tsuda S, Kobayashi M 2008 Function of jasmonate in response and tolerance of Arabidopsis to thrip feeding. Plant Cell Physiol. 49: 68-80.

Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K 2003 Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15: 63-78.

Abe K, Osakabe K, Nakayama S, Endo M, Tagiri A, Todoriki S, Ichikawa H, Toki S 2005 Arabidopsis RAD51C gene is important for homologous recombination in meiosis and mitosis. Plant Physiol. 139: 896-908.

Abe M, Fujiwara M, Kurotani K, Yokoi S, Shimamoto K 2008 Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP). Plant Cell Physiol. 49: 420-432.

Abe T, Hashimoto T 2005 Altered microtubule dynamics by expression of modified alpha-tubulin protein causes right-handed helical growth in transgenic Arabidopsis plants. Plant J. 43: 191-204.

Abel S, Nguyen MD, Chow W, Theologis A 1995 ACS4, a primary indoleacetic acid-responsive gene encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis thaliana. Structural characterization, expression in Escherichia coli, and expression characteristics in response to auxin. J. Biol. Chem. 270: 19093-19099.

Abraham E, Rigo G, Szekely G, Nagy R, Koncz C, Szabados L 2003 Light-dependent induction of proline biosynthesis by abscisic acid and salt stress is inhibited by brassinosteroid in Arabidopsis. Plant Mol. Biol. 51: 363-372.

Abrahams S, Lee E, Walker AR, Tanner GJ, Larkin PJ, Ashton AR 2003 The Arabidopsis TDS4 gene encodes leucoanthocyanidin dioxygenase (LDOX) and is essential for proanthocyanidin synthesis and vacuole development. Plant J. 35: 624-636.

Abrahams S, Tanner GJ, Larkin PJ, Ashton AR 2002 Identification and biochemical characterization of mutants in the proanthocyanidin pathway in Arabidopsis. Plant Physiol. 130: 561-576.

Abu-Abied M, Golomb L, Belausov E, Huang S, Geiger B, Kam Z, Staiger CJ, Sadot E 2006 Identification of plant cytoskeleton-interacting proteins by screening for actin stress fiber association in mammalian fibroblasts. Plant J. 48: 367-379.

Abuqamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, Lam S, Dietrich RA, Mengiste T 2006 Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. Plant J. 48: 28-44.

Acarkan A, Rossberg M, Koch M, Schmidt R 2000 Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella. Plant J. 23: 55-62.

Acevedo-Hernandez GJ, Leon P, Herrera-Estrella LR 2005 Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4. Plant J. 43: 506-519.

Achard P, Cheng H, De Grauwe L, Decat J, Schoutteten H, Moritz T, Van Der Straeten D, Peng J, Harberd NP 2006 Integration of plant responses to environmentally activated phytohormonal signals. Science 311: 91-94.

Achard P, Vriezen WH, Van Der Straeten D, Harberd NP 2003 Ethylene regulates Arabidopsis development via the modulation of DELLA protein growth repressor function. Plant Cell 15: 2816-2825.

Acharya BR, Raina S, Maqbool SB, Jagadeeswaran G, Mosher SL, Appel HM, Schultz JC, Klessig DF, Raina R 2007 Overexpression of CRK13, an Arabidopsis cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae. Plant J. 50: 488-499.

Achkor H, Diaz M, Fernandez MR, Biosca JA, Pares X, Martinez MC 2003 Enhanced formaldehyde detoxification by overexpression of glutathione-dependent formaldehyde dehydrogenase from Arabidopsis. Plant Physiol. 132: 2248-2255.

Acosta-Garcia G, Vielle-Calzada JP 2004 A classical arabinogalactan protein is essential for the initiation of female gametogenesis in Arabidopsis. Plant Cell 16: 2614-2628.

Adachi S, Uchimiya H, Umeda M 2006 Expression of B2-type cyclin-dependent kinase is controlled by protein degradation in Arabidopsis thaliana. Plant Cell Physiol. 47: 1683-1686.

Adam H, Jouannic S, Morcillo F, Verdeil JL, Duval Y, Tregear JW 2007 Determination of flower structure in Elaeis guineensis: do palms use the same homeotic genes as other species? Ann. Bot. (Lond.) 100: 1-12.

Adam H, Jouannic S, Orieux Y, Morcillo F, Richaud F, Duval Y, Tregear JW 2007 Functional characterization of MADS box genes involved in the determination of oil palm flower structure. J. Exp. Bot. 58: 1245-1259.

Adam H, Ouellet F, Kane NA, Agharbaoui Z, Major G, Tominaga Y, Sarhan F 2007 Overexpression of TaVRN1 in Arabidopsis promotes early flowering and alters development. Plant Cell Physiol. 48: 1192-1206.

Adam Z, Rudella A, van Wijk KJ 2006 Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts. Curr. Opin. Plant Biol. 9: 234-240.

Adam Z, Zaltsman A, Sinvany-Villalobo G, Sakamoto W 2005 FtsH proteases in chloroplasts and cyanobacteria. Physiol. Plant. 123: 386-390.

Adams-Phillips L, Barry C, Kannan P, Leclercq J, Bouzayen M, Giovannoni J 2004 Evidence that CTR1-mediated ethylene signal transduction in tomato is encoded by a multigene family whose members display distinct regulatory features. Plant Mol. Biol. 54: 387-404.

Addepalli B, Xu R, Dattaroy T, Li B, Bass WT, Li QQ, Hunt AG 2006 Disease resistance in plants that carry a feedback-regulated yeast poly(A) binding protein gene. Plant Mol. Biol. 61: 383-397.

Adham AR, Zolman BK, Millius A, Bartel B 2005 Mutations in Arabidopsis acyl-CoA oxidase genes reveal distinct and overlapping roles in beta-oxidation. Plant J. 41: 859-874.

Aeschbacher RA, Muller J, Boller T, Wiemken A 1999 Purification of the trehalase GMTRE1 from soybean nodules and cloning of its cDNA. GMTRE1 is expressed at a low level in multiple tissues. Plant Physiol. 119: 489-496.

Agalou A, Purwantomo S, Overnas E, Johannesson H, Zhu X, Estiati A, de Kam RJ, Engstrom P, Slamet-Loedin IH, Zhu Z, Wang M, Xiong L, Meijer AH, Ouwerkerk PB 2008 A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol. 66: 87-103.

Agarwal M, Hao Y, Kapoor A, Dong CH, Fujii H, Zheng X, Zhu JK 2006 A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J. Biol. Chem. 281: 37636-37645.

Agarwal M, Sahi C, Katiyar-Agarwal S, Agarwal S, Young T, Gallie DR, Sharma VM, Ganesan K, Grover A 2003 Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types. Plant Mol. Biol. 51: 543-553.

Agerbirk N, Petersen BL, Olsen CE, Halkier BA, Nielsen JK 2001 1,4-Dimethoxyglucobrassicin in Barbarea and 4-hydroxyglucobrassicin in Arabidopsis and Brassica. J. Agric. Food Chem. 49: 1502-1507.

Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H 2005 Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene. Plant Mol. Biol. 59: 125-135.

Agrawal GK, Yonekura M, Iwahashi Y, Iwahashi H, Rakwal R 2005 System, trends and perspectives of proteomics in dicot plants. Part III: Unraveling the proteomes influenced by the environment, and at the levels of function and genetic relationships. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci. 815: 137-145.

Agrawal S, Kumar A, Srivastava V, Mishra BN 2003 Cloning, expression, activity and folding studies of serine hydroxymethyltransferase: a target enzyme for cancer chemotherapy. J. Mol. Microbiol. Biotechnol. 6: 67-75.

Aguilar-Martinez JA, Poza-Carrion C, Cubas P 2007 Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell 19: 458-472.

Aharon R, Shahak Y, Wininger S, Bendov R, Kapulnik Y, Galili G 2003 Overexpression of a plasma membrane aquaporin in transgenic tobacco improves plant vigor under favorable growth conditions but not under drought or salt stress. Plant Cell 15: 439-447.

Aharoni A, De Vos CH, Wein M, Sun Z, Greco R, Kroon A, Mol JN, O'Connell AP 2001 The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco. Plant J. 28: 319-332.

Aharoni A, Dixit S, Jetter R, Thoenes E, Van Arkel G, Pereira A 2004 The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell 16: 2463-2480.

Aharoni A, Giri AP, Deuerlein S, Griepink F, de Kogel WJ, Verstappen FW, Verhoeven HA, Jongsma MA, Schwab W, Bouwmeester HJ 2003 Terpenoid metabolism in wild-type and transgenic Arabidopsis plants. Plant Cell 15: 2866-2884.

Ahearn KP, Johnson HA, Weigel D, Wagner DR 2001 NFL1, a Nicotiana tabacum LEAFY-like gene, controls meristem initiation and floral structure. Plant Cell Physiol. 42: 1130-1139.

Ahlfors R, Lang S, Overmyer K, Jaspers P, Brosche M, Tauriainen A, Kollist H, Tuominen H, Belles-Boix E, Piippo M, Inze D, Palva ET, Kangasjarvi J 2004 Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses. Plant Cell 16: 1925-1937.

Ahlfors R, Macioszek V, Rudd J, Brosche M, Schlichting R, Scheel D, Kangasjarvi J 2004 Stress hormone-independent activation and nuclear translocation of mitogen-activated protein kinases in Arabidopsis thaliana during ozone exposure. Plant J. 40: 512-522.

Ahmad A, Khan I, Anjum NA, Abrol YP, Iqbal M 2005 Role of sulphate transporter systems in sulphur efficiency of mustard genotypes. Plant Sci. 169: 842-846.

Ahmad M, Galland P, Ritz T, Wiltschko R, Wiltschko W 2007 Magnetic intensity affects cryptochrome-dependent responses in Arabidopsis thaliana. Planta 225: 615-624.

Ahmad M, Grancher N, Heil M, Black RC, Giovani B, Galland P, Lardemer D 2002 Action spectrum for cryptochrome-dependent hypocotyl growth inhibition in Arabidopsis. Plant Physiol. 129: 774-785.

Ahmad M, Jarillo JA, Cashmore AR 1998 Chimeric proteins between cr y1 and cr y2 Arabidopsis blue light photoreceptors indicate overlapping functions and varying protein stability. Plant Cell 10: 197-208.

Ahmad M, Jarillo JA, Smirnova O, Cashmore AR 1998 Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism. Nature 392: 720-723.

Ahmed SU, Bar-Peled M, Raikhel NV 1997 Cloning and subcellular location of an Arabidopsis receptor-like protein that shares common features with protein-sorting receptors of eukaryotic cells. Plant Physiol. 114: 325-336.

Ahn IP, Kim S, Lee YH 2005 Vitamin B1 functions as an activator of plant disease resistance. Plant Physiol. 138: 1505-1515.

Ahn SJ, Shin R, Schachtman DP 2004 Expression of KT/KUP genes in Arabidopsis and the role of root hairs in K+ uptake. Plant Physiol. 134: 1135-1145.

Ahsan N, Yoon HS, Jo J 2005 Molecular cloning of a BcPGIP cDNA from Brassica campestris and its expression to several stresses. Plant Sci. 169: 1081-1089.

Aihara Y, Tabata R, Suzuki T, Shimazaki KI, Nagatani A 2008 Molecular basis of the functional specificities of phototropin 1 and 2. Plant J. Jul 4 [Epub ahead of print].

Aivalakis G, Dimou M, Flemetakis E, Plati F, Katinakis P, Drossopoulos JB 2004 Immunolocalization of carbonic anhydrase and phosphoenolpyruvate carboxylase in developing seeds of Medicago sativa. Plant Physiol. Biochem. 42: 181-186.

Ajjawi I, Rodriguez Milla MA, Cushman J, Shintani DK 2007 Thiamin pyrophosphokinase is required for thiamin cofactor activation in Arabidopsis. Plant Mol. Biol. 65: 151-62.

Akama K, Akihiro T, Kitagawa M, Takaiwa F 2001 Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus. Biochim. Biophys. Acta 1522: 143-150.

Akamatsu T, Hanzawa Y, Ohtake Y, Takahashi T, Nishitani K, Komeda Y 1999 Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Plant Physiol. 121: 715-722.

Al-Ghazi Y, Muller B, Pinloche S, Tranbarger TJ, Nacry P, Rossignol M, Tardieu F, Doumas P 2003 Temporal responses of Arabidopsis root architecture to phosphate starvation: evidence for the involvement of auxin signalling. Plant Cell Environ. 26: 1053-1066.

Al-Lahham A, Rohde V, Heim P, Leuchter R, Veeck J, Wunderlich C, Wolf K, Zimmermann M 1999 Biosynthesis of phytochelatins in the fission yeast. Phytochelatin synthesis: a second role for the glutathione synthetase gene of Schizosaccharomyces pombe. Yeast 15: 385-396.

Alabadí D, Gallego-Bartolome J, Orlando L, García-Carcel L, Rubio V, Martinez C, Frigerio M, Iglesias-Pedraz JM, Espinosa A, Deng XW, Blazquez MA 2008 Gibberellins modulate light signaling pathways to prevent Arabidopsis seedling de-etiolation in darkness. Plant J. 53: 324-335.

Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL 2004 Gibberellins repress photomorphogenesis in darkness. Plant Physiol. 134: 1050-1057.

Albert S, Delseny M, Devic M 1997 BANYULS, a novel negative regulator of flavonoid biosynthesis in the Arabidopsis seed coat. Plant J. 11: 289-299.

Alboresi A, Gestin C, Leydecker MT, Bedu M, Meyer C, Truong HN 2005 Nitrate, a signal relieving seed dormancy in Arabidopsis. Plant Cell Environ. 28: 500-512.

Albrecht C, Russinova E, Hecht V, Baaijens E, de Vries S 2005 The Arabidopsis thaliana SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASES1 and 2 control male sporogenesis. Plant Cell 17: 3337-3349.

Albrecht C, Russinova E, Kemmerling B, Kwaaitaal M, de Vries SC 2008 The Arabidopsis SERK proteins serve brassinosteroid dependent and independent signaling pathways. Plant Physiol. Jul 30 [Epub ahead of print].

Albrecht V, Ingenfeld A, Apel K 2006 Characterization of the snowy cotyledon 1 mutant of Arabidopsis thaliana: the impact of chloroplast elongation factor G on chloroplast development and plant vitality. Plant Mol. Biol. 60: 507-518.

Albrecht V, Ingenfeld A, Apel K 2008 Snowy cotyledon 2: the identification of a zinc finger domain protein essential for chloroplast development in cotyledons but not in true leaves. Plant Mol. Biol. 66: 599-608.

Albrecht V, Weinl S, Blazevic D, D'Angelo C, Batistic O, Kolukisaoglu U, Bock R, Schulz B, Harter K, Kudla J 2003 The calcium sensor CBL1 integrates plant responses to abiotic stresses. Plant J. 36: 457-470.

Alcazar R, Garcia-Martinez JL, Cuevas JC, Tiburcio AF, Altabella T 2005 Overexpression of ADC2 in Arabidopsis induces dwarfism and late-flowering through GA deficiency. Plant J. 43: 425-436.

Aleman L, Kitamura J, Abdel-Mageed H, Lee J, Sun Y, Nakajima M, Ueguchi-Tanaka M, Matsuoka M, Allen RD 2008 Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1. Plant Mol. Biol. 68: 1-16.

Alexander L, Grierson D 2002 Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening. J. Exp. Bot. 53: 2039-2055.

Alexandersson E, Fraysse L, Sjovall-Larsen S, Gustavsson S, Fellert M, Karlsson M, Johanson U, Kjellbom P 2005 Whole gene family expression and drought stress regulation of aquaporins. Plant Mol. Biol. 59: 469-484.

Alexandersson E, Saalbach G, Larsson C, Kjellbom P 2004 Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking. Plant Cell Physiol. 45: 1543-1556.

Alexandre CM, Hennig L 2008 FLC or not FLC: the other side of vernalization. J. Exp. Bot. 59: 1127-1135.

Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA 2006 Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol. 60: 69-85.

Ali GS, Golovkin M, Reddy AS 2003 Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein. Plant J. 36: 883-893.

Ali GS, Prasad KV, Day I, Reddy AS 2007 Ligand-dependent reduction in the membrane mobility of FLAGELLIN SENSITIVE2, an Arabidopsis receptor-like kinase. Plant Cell Physiol. 48: 1601-1611.

Ali R, Ma W, Lemtiri-Chlieh F, Tsaltas D, Leng Q, von Bodman S, Berkowitz GA 2007 Death don't have no mercy and neither does calcium: Arabidopsis CYCLIC NUCLEOTIDE GATED CHANNEL2 and innate immunity. Plant Cell 19: 1081-1095.

Ali R, Zielinski RE, Berkowitz GA 2006 Expression of plant cyclic nucleotide-gated cation channels in yeast. J. Exp. Bot. 57: 125-138.

Ali S, Taylor WC 2001 The 3' non-coding region of a C4 photosynthesis gene increases transgene expression when combined with heterologous promoters. Plant Mol. Biol. 46: 325-333.

Ali-Rachedi S, Bouinot D, Wagner MH, Bonnet M, Sotta B, Grappin P, Jullien M 2004 Changes in endogenous abscisic acid levels during dormancy release and maintenance of mature seeds: studies with the Cape Verde Islands ecotype, the dormant model of Arabidopsis thaliana. Planta 219: 479-488.

Alia, Hayashi H, Chen THH, Murata N 1998 Transformation with a gene for choline oxidase enhances the cold tolerance of Arabidopsis during germination and early growth. Plant Cell Environ. 21: 232-239.

Alia, Hayashi H, Sakamoto A, Murata N 1998 Enhancement of the tolerance of Arabidopsis to high temperatures by genetic engineering of the synthesis of glycinebetaine. Plant J. 16: 155-161.

Alia, Kondo Y, Sakamoto A, Nonaka H, Hayashi H, Saradhi PP, Chen TH, Murata N 1999 Enhanced tolerance to light stress of transgenic Arabidopsis plants that express the codA gene for a bacterial choline oxidase. Plant Mol. Biol. 40: 279-288.

Alkhalfioui F, Renard M, Frendo P, Keichinger C, Meyer Y, Gelhaye E, Hirasawa M, Knaff DB, Ritzenthaler C, Montrichard F 2008 A novel type of thioredoxin dedicated to symbiosis in legumes. Plant Physiol. Jul 9 [Epub ahead of print].

Alkio M, Tabuchi TM, Wang X, Colon-Carmona A 2005 Stress responses to polycyclic aromatic hydrocarbons in Arabidopsis include growth inhibition and hypersensitive response-like symptoms. J. Exp. Bot. 56: 2983-2994.

Allan WL, Simpson JP, Clark SM, Shelp BJ 2008 Gamma-hydroxybutyrate accumulation in Arabidopsis and tobacco plants is a general response to abiotic stress: putative regulation by redox balance and glyoxylate reductase isoforms. J. Exp. Bot. 59: 2555-2564.

Alleman M, Doctor J 2000 Genomic imprinting in plants: observations and evolutionary implications. Plant Mol. Biol. 43: 147-161.

Allemeersch J, Durinck S, Vanderhaeghen R, Alard P, Maes R, Seeuws K, Bogaert T, Coddens K, Deschouwer K, Van Hummelen P, Vuylsteke M, Moreau Y, Kwekkeboom J, Wijfjes AH, May S, Beynon J, Hilson P, Kuiper MT 2005 Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. Plant Physiol. 137: 588-601.

Allen GJ, Kuchitsu K, Chu SP, Murata Y, Schroeder JI 1999 Arabidopsis abi1-1 and abi2-1 phosphatase mutations reduce abscisic acid-induced cytoplasmic calcium rises in guard cells. Plant Cell 11: 1785-1798.

Allen GJ, Murata Y, Chu SP, Nafisi M, Schroeder JI 2002 Hypersensitivity of abscisic acid-induced cytosolic calcium increases in the Arabidopsis farnesyltransferase mutant era1-2. Plant Cell 14: 1649-1662.

Allen T, Ingles PJ, Praekelt U, Smith H, Whitelam GC 2006 Phytochrome-mediated agravitropism in Arabidopsis hypocotyls requires GIL1 and confers a fitness advantage. Plant J. 46: 641-648.

Allen T, Koustenis A, Theodorou G, Somers DE, Kay SA, Whitelam GC, Devlin PF 2006 Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock. Plant Cell 18: 2506-2516.

Allenbach L, Poirier Y 2000 Analysis of the alternative pathways for the beta-oxidation of unsaturated fatty acids using transgenic plants synthesizing polyhydroxyalkanoates in peroxisomes. Plant Physiol. 124: 1159-1168.

Allnutt GV, Rogers HJ, Francis D, Herbert RJ 2007 A LEAFY-like gene in the long-day plant, Silene coeli-rosa is dramatically up-regulated in evoked shoot apical meristems but does not complement the Arabidopsis lfy mutant. J. Exp. Bot. 58: 2249-2259.

Almeras E, Stolz S, Vollenweider S, Reymond P, Mene-Saffrane L, Farmer EE 2003 Reactive electrophile species activate defense gene expression in Arabidopsis. Plant J. 34: 205-216.

Aloni R, Aloni E, Langhans M, Ullrich CI 2006 Role of auxin in regulating Arabidopsis flower development. Planta 223: 315-328.

Aloni R, Langhans M, Aloni E, Dreieicher E, Ullrich CI 2005 Root-synthesized cytokinin in Arabidopsis is distributed in the shoot by the transpiration stream. J. Exp. Bot. 56: 1535-1544.

Aloni R, Langhans M, Aloni E, Ullrich CI 2004 Role of cytokinin in the regulation of root gravitropism. Planta 220: 177-182.

Aloni R, Schwalm K, Langhans M, Ullrich CI 2003 Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta 216: 841-853.

Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, 2003 Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.

Alonso-Blanco C, Gomez-Mena C, Llorente F, Koornneef M, Salinas J, Martinez-Zapater JM 2005 Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiol. 139: 1304-1312.

Alsheikh MK, Svensson JT, Randall SK 2005 Phosphorylation regulated ion-binding is a property shared by the acidic subclass dehydrins. Plant Cell Environ. 28: 1114-1122.

Altmann T 1998 Recent advances in brassinosteroid molecular genetics. Curr. Opin. Plant Biol. 1: 378-383.

Altmann T, Kossmann J 2001 Photosynthesis and primary metabolism. Trends Plant Sci. 6: 93-94.

Aluru MR, Rodermel SR 2004 Control of chloroplast redox by the IMMUTANS terminal oxidase. Physiol. Plant. 120: 4-11.

Aluru MR, Yu F, Fu A, Rodermel S 2006 Arabidopsis variegation mutants: new insights into chloroplast biogenesis. J. Exp. Bot. 57: 1871-1881.

Alvarado MC, Zsigmond LM, Kovacs I, Cseplo A, Koncz C, Szabados LM 2004 Gene trapping with firefly luciferase in Arabidopsis. Tagging of stress-responsive genes. Plant Physiol. 134: 18-27.

Alvarez JP, Pekker I, Goldshmidt A, Blum E, Amsellem Z, Eshed Y 2006 Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell 18: 1134-1151.

Alvarez S, He Y, Chen S 2008 Comparative investigations of the glucosinolate-myrosinase system in Arabidopsis suspension cells and hypocotyls. Plant Cell Physiol. 49: 324-333.

Alvey L, Harberd NP 2005 DELLA proteins: integrators of multiple plant growth regulatory inputs?. Physiol. Plant. 123: 153-160.

Amann K, Lezhneva L, Wanner G, Herrmann RG, Meurer J 2004 ACCUMULATION OF PHOTOSYSTEM ONE1, a member of a novel gene family, is required for accumulation of [4Fe-4S] cluster-containing chloroplast complexes and antenna proteins. Plant Cell 16: 3084-3097.

Amaya I, Ratcliffe OJ, Bradley DJ 1999 Expression of CENTRORADIALIS (CEN) and CEN-like genes in tobacco reveals a conserved mechanism controlling phase change in diverse species. Plant Cell 11: 1405-1418.

Ambikapathy J, Marshall JS, Hocart CH, Hardham AR 2002 The role of proline in osmoregulation in Phytophthora nicotianae. Fungal Genet. Biol. 35: 287-299.

Amin P, Sy DA, Pilgrim ML, Parry DH, Nussaume L, Hoffman NE 1999 Arabidopsis mutants lacking the 43- and 54-kilodalton subunits of the chloroplast signal recognition particle have distinct phenotypes. Plant Physiol. 121: 61-70.

Amira G, Ifat M, Tal A, Hana B, Shmuel G, Rachel A 2005 Soluble methionine enhances accumulation of a 15 kDa zein, a methionine-rich storage protein, in transgenic alfalfa but not in transgenic tobacco plants. J. Exp. Bot. 56: 2443-2452.

Amirjani MR, Sundqvist C 2004 Regeneration of protochlorophyllide in green and greening leaves of plants with varying proportions of protochlorophyllide forms in darkness. Physiol. Plant. 121: 377-390.

Amme S, Matros A, Schlesier B, Mock HP 2006 Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. J. Exp. Bot. 57: 1537-1546.

Ampomah-Dwamena C, Morris BA, Sutherland P, Veit B, Yao JL 2002 Down-regulation of TM29, a tomato SEPALLATA homolog, causes parthenocarpic fruit development and floral reversion. Plant Physiol. 130: 605-617.

An R, Chen QJ, Chai MF, Lu PL, Su Z, Qin ZX, Chen J, Wang XC 2007 AtNHX8, a member of the monovalent cation: proton antiporter-1 family in Arabidopsis thaliana, encodes a putative Li/H antiporter. Plant J. 49: 718-728.

An SH, Choi HW, Hwang IS, Hong JK, Hwang BK 2008 A novel pepper membrane-located receptor-like protein gene CaMRP1 is required for disease susceptibility, methyl jasmonate insensitivity and salt tolerance. Plant Mol. Biol. 67: 519-533.

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