(Pat) Heslop-Harrison JS. Planning for remodelling: nuclear architecture, chromatin and chromosomes. Trends Plant Sci. 8: 195-197 (2003).

Aarts MG, Hodge R, Kalantidis K, Florack D, Wilson ZA, Mulligan BJ, Stiekema WJ, Scott R, Pereira A. The Arabidopsis MALE STERILITY 2 protein shares similarity with reductases in elongation/condensation complexes. Plant J. 12: 615-623 (1997).

Aarts MG, Keijzer CJ, Stiekema WJ, Pereira A. Molecular characterization of the CER1 gene of Arabidopsis involved in epicuticular wax biosynthesis and pollen fertility. Plant Cell 7: 2115-2127 (1995).

Abdel-Ghany SE. Contribution of plastocyanin isoforms to photosynthesis and copper homeostasis in Arabidopsis thaliana grown at different copper regimes. Planta 229: 767-779 (2009).

Abdel-Ghany SE, Burkhead JL, Gogolin KA, Andres-Colas N, Bodecker JR, Puig S, Penarrubia L, Pilon M. AtCCS is a functional homolog of the yeast copper chaperone Ccs1/Lys7. FEBS Lett. 579: 2307-2312 (2005).

Abdel-Ghany SE, Muller-Moule P, Niyogi KK, Pilon M, Shikanai T. Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. Plant Cell 17: 1233-1251 (2005).

Abdel-Ghany SE, Ye H, Garifullina GF, Zhang L, Pilon-Smits EA, Pilon M. Iron-sulfur cluster biogenesis in chloroplasts. Involvement of the scaffold protein CpIsca. Plant Physiol. 138: 161-172 (2005).

Abdulrazzak N, Pollet B, Ehlting J, Larsen K, Asnaghi C, Ronseau S, Proux C, Erhardt M, Seltzer V, Renou JP, Ullmann P, Pauly M, Lapierre C, Werck-Reichhart D. A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiol. 140: 30-48 (2006).

Abe H, Ohnishi J, Narusaka M, Seo S, Narusaka Y, Tsuda S, Kobayashi M. Function of jasmonate in response and tolerance of Arabidopsis to thrip feeding. Plant Cell Physiol. 49: 68-80 (2008).

Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15: 63-78 (2003).

Abe K, Osakabe K, Ishikawa Y, Tagiri A, Yamanouchi H, Takyuu T, Yoshioka T, Ito T, Kobayashi M, Shinozaki K, Ichikawa H, Toki S. Inefficient double-strand DNA break repair is associated with increased fasciation in Arabidopsis BRCA2 mutants. J. Exp. Bot. 60: 2751-2761 (2009).

Abe K, Osakabe K, Nakayama S, Endo M, Tagiri A, Todoriki S, Ichikawa H, Toki S. Arabidopsis RAD51C gene is important for homologous recombination in meiosis and mitosis. Plant Physiol. 139: 896-908 (2005).

Abe M, Fujiwara M, Kurotani K, Yokoi S, Shimamoto K. Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP). Plant Cell Physiol. 49: 420-432 (2008).

Abe T, Hashimoto T. Altered microtubule dynamics by expression of modified alpha-tubulin protein causes right-handed helical growth in transgenic Arabidopsis plants. Plant J. 43: 191-204 (2005).

Abel C, Clauss M, Schaub A, Gershenzon J, Tholl D. Floral and insect-induced volatile formation in Arabidopsis lyrata ssp. petraea, a perennial, outcrossing relative of A. thaliana. Planta 230: 1-11 (2009).

Abel S, Nguyen MD, Chow W, Theologis A. ACS4, a primary indoleacetic acid-responsive gene encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis thaliana. Structural characterization, expression in Escherichia coli, and expression characteristics in response to auxin. J. Biol. Chem. 270: 19093-19099 (1995).

Abraham E, Rigo G, Szekely G, Nagy R, Koncz C, Szabados L. Light-dependent induction of proline biosynthesis by abscisic acid and salt stress is inhibited by brassinosteroid in Arabidopsis. Plant Mol. Biol. 51: 363-372 (2003).

Abrahams S, Lee E, Walker AR, Tanner GJ, Larkin PJ, Ashton AR. The Arabidopsis TDS4 gene encodes leucoanthocyanidin dioxygenase (LDOX) and is essential for proanthocyanidin synthesis and vacuole development. Plant J. 35: 624-636 (2003).

Abrahams S, Tanner GJ, Larkin PJ, Ashton AR. Identification and biochemical characterization of mutants in the proanthocyanidin pathway in Arabidopsis. Plant Physiol. 130: 561-576 (2002).

Abreu ME, Munne-Bosch S. Salicylic acid deficiency in NahG transgenic lines and sid2 mutants increases seed yield in the annual plant Arabidopsis thaliana. J. Exp. Bot. 60: 1261-1271 (2009).

Abu-Abied M, Golomb L, Belausov E, Huang S, Geiger B, Kam Z, Staiger CJ, Sadot E. Identification of plant cytoskeleton-interacting proteins by screening for actin stress fiber association in mammalian fibroblasts. Plant J. 48: 367-379 (2006).

Abuqamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, Lam S, Dietrich RA, Mengiste T. Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. Plant J. 48: 28-44 (2006).

Acarkan A, Rossberg M, Koch M, Schmidt R. Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella. Plant J. 23: 55-62 (2000).

Acevedo-Hernandez GJ, Leon P, Herrera-Estrella LR. Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4. Plant J. 43: 506-519 (2005).

Achard P, Cheng H, De Grauwe L, Decat J, Schoutteten H, Moritz T, Van Der Straeten D, Peng J, Harberd NP. Integration of plant responses to environmentally activated phytohormonal signals. Science 311: 91-94 (2006).

Achard P, Vriezen WH, Van Der Straeten D, Harberd NP. Ethylene regulates Arabidopsis development via the modulation of DELLA protein growth repressor function. Plant Cell 15: 2816-2825 (2003).

Acharya BR, Raina S, Maqbool SB, Jagadeeswaran G, Mosher SL, Appel HM, Schultz JC, Klessig DF, Raina R. Overexpression of CRK13, an Arabidopsis cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae. Plant J. 50: 488-499 (2007).

Achkor H, Diaz M, Fernandez MR, Biosca JA, Pares X, Martinez MC. Enhanced formaldehyde detoxification by overexpression of glutathione-dependent formaldehyde dehydrogenase from Arabidopsis. Plant Physiol. 132: 2248-2255 (2003).

Acosta-Garcia G, Vielle-Calzada JP. A classical arabinogalactan protein is essential for the initiation of female gametogenesis in Arabidopsis. Plant Cell 16: 2614-2628 (2004).

Adachi S, Uchimiya H, Umeda M. Expression of B2-type cyclin-dependent kinase is controlled by protein degradation in Arabidopsis thaliana. Plant Cell Physiol. 47: 1683-1686 (2006).

Adam H, Jouannic S, Morcillo F, Verdeil JL, Duval Y, Tregear JW. Determination of flower structure in Elaeis guineensis: do palms use the same homeotic genes as other species? Ann. Bot. (Lond.) 100: 1-12 (2007).

Adam H, Jouannic S, Orieux Y, Morcillo F, Richaud F, Duval Y, Tregear JW. Functional characterization of MADS box genes involved in the determination of oil palm flower structure. J. Exp. Bot. 58: 1245-1259 (2007).

Adam H, Ouellet F, Kane NA, Agharbaoui Z, Major G, Tominaga Y, Sarhan F. Overexpression of TaVRN1 in Arabidopsis promotes early flowering and alters development. Plant Cell Physiol. 48: 1192-1206 (2007).

Adam Z, Rudella A, van Wijk KJ. Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts. Curr. Opin. Plant Biol. 9: 234-240 (2006).

Adam Z, Zaltsman A, Sinvany-Villalobo G, Sakamoto W. FtsH proteases in chloroplasts and cyanobacteria. Physiol. Plant. 123: 386-390 (2005).

Adamczyk BJ, Fernandez DE. MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Plant Physiol. 149: 1713-1723 (2009).

Adamczyk BJ, Lehti-Shiu MD, Fernandez DE. The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis. Plant J. 50: 1007-1019 (2007).

Adams-Phillips L, Barry C, Kannan P, Leclercq J, Bouzayen M, Giovannoni J. Evidence that CTR1-mediated ethylene signal transduction in tomato is encoded by a multigene family whose members display distinct regulatory features. Plant Mol. Biol. 54: 387-404 (2004).

Addepalli B, Xu R, Dattaroy T, Li B, Bass WT, Li QQ, Hunt AG. Disease resistance in plants that carry a feedback-regulated yeast poly(A) binding protein gene. Plant Mol. Biol. 61: 383-397 (2006).

Adham AR, Zolman BK, Millius A, Bartel B. Mutations in Arabidopsis acyl-CoA oxidase genes reveal distinct and overlapping roles in beta-oxidation. Plant J. 41: 859-874 (2005).

Adie BA, Perez-Perez J, Perez-Perez MM, Godoy M, Sanchez-Serrano JJ, Schmelz EA, Solano R. ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis. Plant Cell 19: 1665-1681 (2007).

Aeschbacher RA, Muller J, Boller T, Wiemken A. Purification of the trehalase GMTRE1 from soybean nodules and cloning of its cDNA. GMTRE1 is expressed at a low level in multiple tissues. Plant Physiol. 119: 489-496 (1999).

Agalou A, Purwantomo S, Overnas E, Johannesson H, Zhu X, Estiati A, de Kam RJ, Engstrom P, Slamet-Loedin IH, Zhu Z, Wang M, Xiong L, Meijer AH, Ouwerkerk PB. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol. 66: 87-103 (2008).

Agarwal M, Hao Y, Kapoor A, Dong CH, Fujii H, Zheng X, Zhu JK. A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J. Biol. Chem. 281: 37636-37645 (2006).

Agarwal M, Sahi C, Katiyar-Agarwal S, Agarwal S, Young T, Gallie DR, Sharma VM, Ganesan K, Grover A. Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types. Plant Mol. Biol. 51: 543-553 (2003).

Agerbirk N, Petersen BL, Olsen CE, Halkier BA, Nielsen JK. 1,4-Dimethoxyglucobrassicin in Barbarea and 4-hydroxyglucobrassicin in Arabidopsis and Brassica. J. Agric. Food Chem. 49: 1502-1507 (2001).

Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H. Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene. Plant Mol. Biol. 59: 125-135 (2005).

Agrawal GK, Yonekura M, Iwahashi Y, Iwahashi H, Rakwal R. System, trends and perspectives of proteomics in dicot plants. Part III: Unraveling the proteomes influenced by the environment, and at the levels of function and genetic relationships. J. Chromatogr. B. Analyt. Technol. Biomed. Life Sci. 815: 137-145 (2005).

Agrawal S, Kumar A, Srivastava V, Mishra BN. Cloning, expression, activity and folding studies of serine hydroxymethyltransferase: a target enzyme for cancer chemotherapy. J. Mol. Microbiol. Biotechnol. 6: 67-75 (2003).

Aguilar-Martinez JA, Poza-Carrion C, Cubas P. Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell 19: 458-472 (2007).

Aharon R, Shahak Y, Wininger S, Bendov R, Kapulnik Y, Galili G. Overexpression of a plasma membrane aquaporin in transgenic tobacco improves plant vigor under favorable growth conditions but not under drought or salt stress. Plant Cell 15: 439-447 (2003).

Aharoni A, De Vos CH, Wein M, Sun Z, Greco R, Kroon A, Mol JN, O'Connell AP. The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco. Plant J. 28: 319-332 (2001).

Aharoni A, Dixit S, Jetter R, Thoenes E, Van Arkel G, Pereira A. The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. Plant Cell 16: 2463-2480 (2004).

Aharoni A, Giri AP, Deuerlein S, Griepink F, de Kogel WJ, Verstappen FW, Verhoeven HA, Jongsma MA, Schwab W, Bouwmeester HJ. Terpenoid metabolism in wild-type and transgenic Arabidopsis plants. Plant Cell 15: 2866-2884 (2003).

Ahearn KP, Johnson HA, Weigel D, Wagner DR. NFL1, a Nicotiana tabacum LEAFY-like gene, controls meristem initiation and floral structure. Plant Cell Physiol. 42: 1130-1139 (2001).

Ahlfors R, Brosche M, Kollist H, Kangasjarvi J. Nitric oxide modulates ozone-induced cell death, hormone biosynthesis and gene expression in Arabidopsis thaliana. Plant J. Nov 28 [Epub ahead of print] (2008).

Ahlfors R, Lang S, Overmyer K, Jaspers P, Brosche M, Tauriainen A, Kollist H, Tuominen H, Belles-Boix E, Piippo M, Inze D, Palva ET, Kangasjarvi J. Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses. Plant Cell 16: 1925-1937 (2004).

Ahlfors R, Macioszek V, Rudd J, Brosche M, Schlichting R, Scheel D, Kangasjarvi J. Stress hormone-independent activation and nuclear translocation of mitogen-activated protein kinases in Arabidopsis thaliana during ozone exposure. Plant J. 40: 512-522 (2004).

Ahmad A, Khan I, Anjum NA, Abrol YP, Iqbal M. Role of sulphate transporter systems in sulphur efficiency of mustard genotypes. Plant Sci. 169: 842-846 (2005).

Ahmad M, Galland P, Ritz T, Wiltschko R, Wiltschko W. Magnetic intensity affects cryptochrome-dependent responses in Arabidopsis thaliana. Planta 225: 615-624 (2007).

Ahmad M, Grancher N, Heil M, Black RC, Giovani B, Galland P, Lardemer D. Action spectrum for cryptochrome-dependent hypocotyl growth inhibition in Arabidopsis. Plant Physiol. 129: 774-785 (2002).

Ahmad M, Jarillo JA, Cashmore AR. Chimeric proteins between cr y1 and cr y2 Arabidopsis blue light photoreceptors indicate overlapping functions and varying protein stability. Plant Cell 10: 197-208 (1998).

Ahmad M, Jarillo JA, Smirnova O, Cashmore AR. Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism. Nature 392: 720-723 (1998).

Ahmed SU, Bar-Peled M, Raikhel NV. Cloning and subcellular location of an Arabidopsis receptor-like protein that shares common features with protein-sorting receptors of eukaryotic cells. Plant Physiol. 114: 325-336 (1997).

Ahn IP, Kim S, Lee YH. Vitamin B1 functions as an activator of plant disease resistance. Plant Physiol. 138: 1505-1515 (2005).

Ahn SJ, Shin R, Schachtman DP. Expression of KT/KUP genes in Arabidopsis and the role of root hairs in K+ uptake. Plant Physiol. 134: 1135-1145 (2004).

Ahsan N, Yoon HS, Jo J. Molecular cloning of a BcPGIP cDNA from Brassica campestris and its expression to several stresses. Plant Sci. 169: 1081-1089 (2005).

Aihara Y, Tabata R, Suzuki T, Shimazaki KI, Nagatani A. Molecular basis of the functional specificities of phototropin 1 and 2. Plant J. 56: 364-375 (2008).

Aivalakis G, Dimou M, Flemetakis E, Plati F, Katinakis P, Drossopoulos JB. Immunolocalization of carbonic anhydrase and phosphoenolpyruvate carboxylase in developing seeds of Medicago sativa. Plant Physiol. Biochem. 42: 181-186 (2004).

Ajjawi I, Rodriguez Milla MA, Cushman J, Shintani DK. Thiamin pyrophosphokinase is required for thiamin cofactor activation in Arabidopsis. Plant Mol. Biol. 65: 151-62 (2007).

Akama K, Akihiro T, Kitagawa M, Takaiwa F. Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus. Biochim. Biophys. Acta 1522: 143-150 (2001).

Akamatsu T, Hanzawa Y, Ohtake Y, Takahashi T, Nishitani K, Komeda Y. Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Plant Physiol. 121: 715-722 (1999).

Al Khateeb WM, Schroeder DF. Overexpression of Arabidopsis damaged DNA binding protein 1A (DDB1A) enhances UV tolerance. Plant Mol. Biol. 70: 371-383 (2009).

Al-Ghazi Y, Muller B, Pinloche S, Tranbarger TJ, Nacry P, Rossignol M, Tardieu F, Doumas P. Temporal responses of Arabidopsis root architecture to phosphate starvation: evidence for the involvement of auxin signalling. Plant Cell Environ. 26: 1053-1066 (2003).

Al-Lahham A, Rohde V, Heim P, Leuchter R, Veeck J, Wunderlich C, Wolf K, Zimmermann M. Biosynthesis of phytochelatins in the fission yeast. Phytochelatin synthesis: a second role for the glutathione synthetase gene of Schizosaccharomyces pombe. Yeast 15: 385-396 (1999).

Alabadí D, Gallego-Bartolome J, Orlando L, García-Carcel L, Rubio V, Martinez C, Frigerio M, Iglesias-Pedraz JM, Espinosa A, Deng XW, Blazquez MA. Gibberellins modulate light signaling pathways to prevent Arabidopsis seedling de-etiolation in darkness. Plant J. 53: 324-335 (2008).

Alabadi D, Gil J, Blazquez MA, Garcia-Martinez JL. Gibberellins repress photomorphogenesis in darkness. Plant Physiol. 134: 1050-1057 (2004).

Albert S, Delseny M, Devic M. BANYULS, a novel negative regulator of flavonoid biosynthesis in the Arabidopsis seed coat. Plant J. 11: 289-299 (1997).

Alboresi A, Gestin C, Leydecker MT, Bedu M, Meyer C, Truong HN. Nitrate, a signal relieving seed dormancy in Arabidopsis. Plant Cell Environ. 28: 500-512 (2005).

Albrecht C, Russinova E, Hecht V, Baaijens E, de Vries S. The Arabidopsis thaliana SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASES1 and 2 control male sporogenesis. Plant Cell 17: 3337-3349 (2005).

Albrecht C, Russinova E, Kemmerling B, Kwaaitaal M, de Vries SC. Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways. Plant Physiol. 148: 611-619 (2008).

Albrecht V, Ingenfeld A, Apel K. Characterization of the snowy cotyledon 1 mutant of Arabidopsis thaliana: the impact of chloroplast elongation factor G on chloroplast development and plant vitality. Plant Mol. Biol. 60: 507-518 (2006).

Albrecht V, Ingenfeld A, Apel K. Snowy cotyledon 2: the identification of a zinc finger domain protein essential for chloroplast development in cotyledons but not in true leaves. Plant Mol. Biol. 66: 599-608 (2008).

Albrecht V, Weinl S, Blazevic D, D'Angelo C, Batistic O, Kolukisaoglu U, Bock R, Schulz B, Harter K, Kudla J. The calcium sensor CBL1 integrates plant responses to abiotic stresses. Plant J. 36: 457-470 (2003).

Alcazar R, Garcia-Martinez JL, Cuevas JC, Tiburcio AF, Altabella T. Overexpression of ADC2 in Arabidopsis induces dwarfism and late-flowering through GA deficiency. Plant J. 43: 425-436 (2005).

Alder A, Holdermann I, Beyer P, Al-Babili S. Carotenoid oxygenases involved in plant branching catalyze a highly specific, conserved apocarotenoid cleavage reaction. Biochem. J. 416: 289-296 (2008).

Aleman L, Kitamura J, Abdel-Mageed H, Lee J, Sun Y, Nakajima M, Ueguchi-Tanaka M, Matsuoka M, Allen RD. Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1. Plant Mol. Biol. 68: 1-16 (2008).

Alexander L, Grierson D. Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening. J. Exp. Bot. 53: 2039-2055 (2002).

Alexandersson E, Fraysse L, Sjovall-Larsen S, Gustavsson S, Fellert M, Karlsson M, Johanson U, Kjellbom P. Whole gene family expression and drought stress regulation of aquaporins. Plant Mol. Biol. 59: 469-484 (2005).

Alexandersson E, Saalbach G, Larsson C, Kjellbom P. Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking. Plant Cell Physiol. 45: 1543-1556 (2004).

Alexandre CM, Hennig L. FLC or not FLC: the other side of vernalization. J. Exp. Bot. 59: 1127-1135 (2008).

Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol. 69: 179-194 (2009).

Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol. 60: 69-85 (2006).

Alferez F, Zhong GY, Burns JK. A citrus abscission agent induces anoxia- and senescence-related gene expression in Arabidopsis. J. Exp. Bot. 58: 2451-2462 (2007).

Ali GS, Golovkin M, Reddy AS. Nuclear localization and in vivo dynamics of a plant-specific serine/arginine-rich protein. Plant J. 36: 883-893 (2003).

Ali GS, Prasad KV, Day I, Reddy AS. Ligand-dependent reduction in the membrane mobility of FLAGELLIN SENSITIVE2, an Arabidopsis receptor-like kinase. Plant Cell Physiol. 48: 1601-1611 (2007).

Ali R, Ma W, Lemtiri-Chlieh F, Tsaltas D, Leng Q, von Bodman S, Berkowitz GA. Death don't have no mercy and neither does calcium: Arabidopsis CYCLIC NUCLEOTIDE GATED CHANNEL2 and innate immunity. Plant Cell 19: 1081-1095 (2007).

Ali R, Zielinski RE, Berkowitz GA. Expression of plant cyclic nucleotide-gated cation channels in yeast. J. Exp. Bot. 57: 125-138 (2006).

Ali S, Taylor WC. The 3' non-coding region of a C4 photosynthesis gene increases transgene expression when combined with heterologous promoters. Plant Mol. Biol. 46: 325-333 (2001).

Ali-Rachedi S, Bouinot D, Wagner MH, Bonnet M, Sotta B, Grappin P, Jullien M. Changes in endogenous abscisic acid levels during dormancy release and maintenance of mature seeds: studies with the Cape Verde Islands ecotype, the dormant model of Arabidopsis thaliana. Planta 219: 479-488 (2004).

Alia, Hayashi H, Chen THH, Murata N. Transformation with a gene for choline oxidase enhances the cold tolerance of Arabidopsis during germination and early growth. Plant Cell Environ. 21: 232-239 (1998).

Alia, Hayashi H, Sakamoto A, Murata N. Enhancement of the tolerance of Arabidopsis to high temperatures by genetic engineering of the synthesis of glycinebetaine. Plant J. 16: 155-161 (1998).

Alia, Kondo Y, Sakamoto A, Nonaka H, Hayashi H, Saradhi PP, Chen TH, Murata N. Enhanced tolerance to light stress of transgenic Arabidopsis plants that express the codA gene for a bacterial choline oxidase. Plant Mol. Biol. 40: 279-288 (1999).

Alkhalfioui F, Renard M, Frendo P, Keichinger C, Meyer Y, Gelhaye E, Hirasawa M, Knaff DB, Ritzenthaler C, Montrichard F. A novel type of thioredoxin dedicated to symbiosis in legumes. Plant Physiol. 148: 424-435 (2008).

Alkio M, Tabuchi TM, Wang X, Colon-Carmona A. Stress responses to polycyclic aromatic hydrocarbons in Arabidopsis include growth inhibition and hypersensitive response-like symptoms. J. Exp. Bot. 56: 2983-2994 (2005).

Allan WL, Simpson JP, Clark SM, Shelp BJ. Gamma-hydroxybutyrate accumulation in Arabidopsis and tobacco plants is a general response to abiotic stress: putative regulation by redox balance and glyoxylate reductase isoforms. J. Exp. Bot. 59: 2555-2564 (2008).

Alleman M, Doctor J. Genomic imprinting in plants: observations and evolutionary implications. Plant Mol. Biol. 43: 147-161 (2000).

Allemeersch J, Durinck S, Vanderhaeghen R, Alard P, Maes R, Seeuws K, Bogaert T, Coddens K, Deschouwer K, Van Hummelen P, Vuylsteke M, Moreau Y, Kwekkeboom J, Wijfjes AH, May S, Beynon J, Hilson P, Kuiper MT. Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. Plant Physiol. 137: 588-601 (2005).

Allen GJ, Kuchitsu K, Chu SP, Murata Y, Schroeder JI. Arabidopsis abi1-1 and abi2-1 phosphatase mutations reduce abscisic acid-induced cytoplasmic calcium rises in guard cells. Plant Cell 11: 1785-1798 (1999).

Allen GJ, Murata Y, Chu SP, Nafisi M, Schroeder JI. Hypersensitivity of abscisic acid-induced cytosolic calcium increases in the Arabidopsis farnesyltransferase mutant era1-2. Plant Cell 14: 1649-1662 (2002).

Allen T, Ingles PJ, Praekelt U, Smith H, Whitelam GC. Phytochrome-mediated agravitropism in Arabidopsis hypocotyls requires GIL1 and confers a fitness advantage. Plant J. 46: 641-648 (2006).

Allen T, Koustenis A, Theodorou G, Somers DE, Kay SA, Whitelam GC, Devlin PF. Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock. Plant Cell 18: 2506-2516 (2006).

Allenbach L, Poirier Y. Analysis of the alternative pathways for the beta-oxidation of unsaturated fatty acids using transgenic plants synthesizing polyhydroxyalkanoates in peroxisomes. Plant Physiol. 124: 1159-1168 (2000).

Allnutt GV, Rogers HJ, Francis D, Herbert RJ. A LEAFY-like gene in the long-day plant, Silene coeli-rosa is dramatically up-regulated in evoked shoot apical meristems but does not complement the Arabidopsis lfy mutant. J. Exp. Bot. 58: 2249-2259 (2007).

Almagro A, Lin SH, Tsay YF. Characterization of the Arabidopsis nitrate transporter NRT1.6 reveals a role of nitrate in early embryo development. Plant Cell 20: 3289-3299 (2008).

Almeras E, Stolz S, Vollenweider S, Reymond P, Mene-Saffrane L, Farmer EE. Reactive electrophile species activate defense gene expression in Arabidopsis. Plant J. 34: 205-216 (2003).

Aloni R, Aloni E, Langhans M, Ullrich CI. Role of auxin in regulating Arabidopsis flower development. Planta 223: 315-328 (2006).

Aloni R, Langhans M, Aloni E, Dreieicher E, Ullrich CI. Root-synthesized cytokinin in Arabidopsis is distributed in the shoot by the transpiration stream. J. Exp. Bot. 56: 1535-1544 (2005).

Aloni R, Langhans M, Aloni E, Ullrich CI. Role of cytokinin in the regulation of root gravitropism. Planta 220: 177-182 (2004).

Aloni R, Schwalm K, Langhans M, Ullrich CI. Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta 216: 841-853 (2003).

Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK,. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657 (2003).

Alonso-Blanco C, Gomez-Mena C, Llorente F, Koornneef M, Salinas J, Martinez-Zapater JM. Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiol. 139: 1304-1312 (2005).

Alsheikh MK, Svensson JT, Randall SK. Phosphorylation regulated ion-binding is a property shared by the acidic subclass dehydrins. Plant Cell Environ. 28: 1114-1122 (2005).

Altmann T. Recent advances in brassinosteroid molecular genetics. Curr. Opin. Plant Biol. 1: 378-383 (1998).

Altmann T, Kossmann J. Photosynthesis and primary metabolism. Trends Plant Sci. 6: 93-94 (2001).

Aluru MR, Rodermel SR. Control of chloroplast redox by the IMMUTANS terminal oxidase. Physiol. Plant. 120: 4-11 (2004).

Aluru MR, Yu F, Fu A, Rodermel S. Arabidopsis variegation mutants: new insights into chloroplast biogenesis. J. Exp. Bot. 57: 1871-1881 (2006).

Aluru MR, Zola J, Foudree A, Rodermel SR. Chloroplast photooxidation-induced transcriptome reprogramming in Arabidopsis immutans white leaf sectors. Plant Physiol. 150: 904-923 (2009).

Alvarado MC, Zsigmond LM, Kovacs I, Cseplo A, Koncz C, Szabados LM. Gene trapping with firefly luciferase in Arabidopsis. Tagging of stress-responsive genes. Plant Physiol. 134: 18-27 (2004).

Alvarez JP, Pekker I, Goldshmidt A, Blum E, Amsellem Z, Eshed Y. Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell 18: 1134-1151 (2006).

Alvarez S, He Y, Chen S. Comparative investigations of the glucosinolate-myrosinase system in Arabidopsis suspension cells and hypocotyls. Plant Cell Physiol. 49: 324-333 (2008).

Alvarez-Buylla ER, Garcia-Ponce B, Garay-Arroyo A. Unique and redundant functional domains of APETALA1 and CAULIFLOWER, two recently duplicated Arabidopsis thaliana floral MADS-box genes. J. Exp. Bot. 57: 3099-3107 (2006).

Alvey L, Harberd NP. DELLA proteins: integrators of multiple plant growth regulatory inputs?. Physiol. Plant. 123: 153-160 (2005).

Amann K, Lezhneva L, Wanner G, Herrmann RG, Meurer J. ACCUMULATION OF PHOTOSYSTEM ONE1, a member of a novel gene family, is required for accumulation of [4Fe-4S] cluster-containing chloroplast complexes and antenna proteins. Plant Cell 16: 3084-3097 (2004).

Amaya I, Ratcliffe OJ, Bradley DJ. Expression of CENTRORADIALIS (CEN) and CEN-like genes in tobacco reveals a conserved mechanism controlling phase change in diverse species. Plant Cell 11: 1405-1418 (1999).

Ambikapathy J, Marshall JS, Hocart CH, Hardham AR. The role of proline in osmoregulation in Phytophthora nicotianae. Fungal Genet. Biol. 35: 287-299 (2002).

Amin P, Sy DA, Pilgrim ML, Parry DH, Nussaume L, Hoffman NE. Arabidopsis mutants lacking the 43- and 54-kilodalton subunits of the chloroplast signal recognition particle have distinct phenotypes. Plant Physiol. 121: 61-70 (1999).

Amira G, Ifat M, Tal A, Hana B, Shmuel G, Rachel A. Soluble methionine enhances accumulation of a 15 kDa zein, a methionine-rich storage protein, in transgenic alfalfa but not in transgenic tobacco plants. J. Exp. Bot. 56: 2443-2452 (2005).

Amirjani MR, Sundqvist C. Regeneration of protochlorophyllide in green and greening leaves of plants with varying proportions of protochlorophyllide forms in darkness. Physiol. Plant. 121: 377-390 (2004).

Amme S, Matros A, Schlesier B, Mock HP. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. J. Exp. Bot. 57: 1537-1546 (2006).

Ampomah-Dwamena C, Morris BA, Sutherland P, Veit B, Yao JL. Down-regulation of TM29, a tomato SEPALLATA homolog, causes parthenocarpic fruit development and floral reversion. Plant Physiol. 130: 605-617 (2002).

An R, Chen QJ, Chai MF, Lu PL, Su Z, Qin ZX, Chen J, Wang XC. AtNHX8, a member of the monovalent cation: proton antiporter-1 family in Arabidopsis thaliana, encodes a putative Li/H antiporter. Plant J. 49: 718-728 (2007).

An SH, Choi HW, Hwang IS, Hong JK, Hwang BK. A novel pepper membrane-located receptor-like protein gene CaMRP1 is required for disease susceptibility, methyl jasmonate insensitivity and salt tolerance. Plant Mol. Biol. 67: 519-533 (2008).

Anand A, Krichevsky A, Schornack S, Lahaye T, Tzfira T, Tang Y, Citovsky V, Mysore KS. Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants. Plant Cell 19: 1695-1708 (2007).

Ananieva K, Malbeck J, Kaminek M, van Staden J. Methyl jasmonate down-regulates endogenous cytokinin levels in cotyledons of Cucurbita pepo (zucchini) seedlings. Physiol. Plant. 122: 496-503 (2004).

Andeme Ondzighi C, Christopher DA, Cho EJ, Chang SC, Staehelin LA. Arabidopsis protein disulfide isomerase-5 inhibits cysteine proteases during trafficking to vacuoles before programmed cell death of the endothelium in developing seeds. Plant Cell 20: 2205-2220 (2008).

Andeme-Onzighi C, Sivaguru M, Judy-March J, Baskin TI, Driouich A. The reb1-1 mutation of Arabidopsis alters the morphology of trichoblasts, the expression of arabinogalactan-proteins and the organization of cortical microtubules. Planta 215: 949-958 (2002).

Andersen SU, Algreen-Petersen RG, Hoedl M, Jurkiewicz A, Cvitanich C, Braunschweig U, Schauser L, Oh SA, Twell D, Jensen EO. The conserved cysteine-rich domain of a tesmin/TSO1-like protein binds zinc in vitro and TSO1 is required for both male and female fertility in Arabidopsis thaliana. J. Exp. Bot. 58: 3657-3670 (2007).

Anderson CM, Wagner TA, Perret M, He ZH, He D, Kohorn BD. WAKs: cell wall-associated kinases linking the cytoplasm to the extracellular matrix. Plant Mol. Biol. 47: 197-206 (2001).

Anderson HJ, Vonarx EJ, Pastushok L, Nakagawa M, Katafuchi A, Gruz P, Di Rubbo A, Grice DM, Osmond MJ, Sakamoto AN, Nohmi T, Xiao W, Kunz BA. Arabidopsis thaliana Y-family DNA polymerase eta catalyses translesion synthesis and interacts functionally with PCNA2. Plant J. 55: 895-908 (2008).

Anderson JC, Pascuzzi PE, Xiao F, Sessa G, Martin GB. Host-mediated phosphorylation of type III effector AvrPto promotes Pseudomonas virulence and avirulence in tomato. Plant Cell 18: 502-514 (2006).

Anderson JC, Peck SC. A simple and rapid technique for detecting protein phosphorylation using one-dimensional isoelectric focusing gels and immunoblot analysis. Plant J. 55: 881-885 (2008).

Anderson JP, Badruzsaufari E, Schenk PM, Manners JM, Desmond OJ, Ehlert C, Maclean DJ, Ebert PR, Kazan K. Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in Arabidopsis. Plant Cell 16: 3460-3479 (2004).

Anderson MB, Folta K, Warpeha KM, Gibbons J, Gao J, Kaufman LS. Blue light-directed destabilization of the pea Lhcb1*4 transcript depends on sequences within the 5' untranslated region. Plant Cell 11: 1579-1590 (1999).

Andersson CR, Helliwell CA, Bagnall DJ, Hughes TP, Finnegan EJ, Peacock WJ, Dennis ES. The FLX gene of Arabidopsis is required for FRI-dependent activation of FLC expression. Plant Cell Physiol. 49: 191-200 (2008).

Andersson J, Wentworth M, Walters RG, Howard CA, Ruban AV, Horton P, Jansson S. Absence of the Lhcb1 and Lhcb2 proteins of the light-harvesting complex of photosystem II - effects on photosynthesis, grana stacking and fitness. Plant J. 35: 350-361 (2003).

Andersson MX, Kourtchenko O, Dangl JL, Mackey D, Ellerstrom M. Phospholipase-dependent signalling during the AvrRpm1- and AvrRpt2-induced disease resistance responses in Arabidopsis thaliana. Plant J. 47: 947-959 (2006).

Andersson MX, Stridh MH, Larsson KE, Lijenberg C, Sandelius AS. Phosphate-deficient oat replaces a major portion of the plasma membrane phospholipids with the galactolipid digalactosyldiacylglycerol. FEBS Lett. 537: 128-132 (2003).

Andersson U, Heddad M, Adamska I. Light stress-induced one-helix protein of the chlorophyll a/b-binding family associated with photosystem I. Plant Physiol. 132: 811-820 (2003).

Andersson-Gunneras S, Mellerowicz EJ, Love J, Segerman B, Ohmiya Y, Coutinho PM, Nilsson P, Henrissat B, Moritz T, Sundberg B. Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant J. 45: 144-165 (2006).

Ando S, Tsushima S, Kamachi S, Konagaya KI, Tabei Y. Alternative transcription initiation of the nitrilase gene (BrNIT2) caused by infection with Plasmodiophora brassicae Woron. in Chinese cabbage (Brassica rapa L.). Plant Mol. Biol. 68: 557-569 (2008).

Andre C, Froehlich JE, Moll MR, Benning C. A heteromeric plastidic pyruvate kinase complex involved in seed oil biosynthesis in Arabidopsis. Plant Cell 19: 2006-2022 (2007).

Andreasson E, Jorgensen LB, Hoglund AS, Rask L, Meijer J. Different myrosinase and idioblast distribution in Arabidopsis and Brassica napus. Plant Physiol. 127: 1750-1763 (2001).

Andreasson E, Taipalensuu J, Rask L, Meijer J. Age-dependent wound induction of a myrosinase-associated protein from oilseed rape (Brassica napus). Plant Mol. Biol. 41: 171-180 (1999).

Andres-Colas N, Sancenon V, Rodriguez-Navarro S, Mayo S, Thiele DJ, Ecker JR, Puig S, Penarrubia L. The Arabidopsis heavy metal P-type ATPase HMA5 interacts with metallochaperones and functions in copper detoxification of roots. Plant J. 45: 225-236 (2006).

Anil VS, Rajkumar P, Kumar P, Mathew MK. A plant Ca2+ pump, ACA2, relieves salt hypersensitivity in yeast. Modulation of cytosolic calcium signature and activation of adaptive Na+ homeostasis. J. Biol. Chem. 283: 3497-3506 (2008).

Anoop VM, Basu U, McCammon MT, McAlister-Henn L, Taylor GJ. Modulation of citrate metabolism alters aluminum tolerance in yeast and transgenic canola overexpressing a mitochondrial citrate synthase. Plant Physiol. 132: 2205-2217 (2003).

Ansari MI, Lee RH, Chen SCG. A novel senescence-associated gene encoding gamma-aminobutyric acid (GABA): pyruvate transaminase is upregulated during rice leaf senescence. Physiol. Plant. 123: 1-8 (2005).

Anthony RG, Khan S, Costa J, Pais MS, Bogre L. The Arabidopsis protein kinase PTI1-2 is activated by convergent phosphatidic acid and oxidative stress signaling pathways downstream of PDK1 and OXI1. J. Biol. Chem. 281: 37536-37546 (2006).

Antoine W, Stewart JM, de los Reyes BG. The rice homolog of the sodium/lithium tolerance gene functions as molecular chaperon in vitro. Physiol. Plant. 125: 299-310 (2005).

Antony E, Taybi T, Courbot M, Mugford ST, Smith JA, Borland AM. Cloning, localization and expression analysis of vacuolar sugar transporters in the CAM plant Ananas comosus (pineapple). J. Exp. Bot. 59: 1895-1908 (2008).

Antosiewicz DM, Purugganan MM, Polisensky DH, Braam J. Cellular localization of Arabidopsis xyloglucan endotransglycosylase-related proteins during development and after wind stimulation. Plant Physiol. 115: 1319-1328 (1997).

Aoki K, Ogata Y, Shibata D. Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol. 48: 381-390 (2007).

Aparicio F, Thomas CL, Lederer C, Niu Y, Wang D, Maule AJ. Virus induction of heat shock protein 70 reflects a general response to protein accumulation in the plant cytosol. Plant Physiol. 138: 529-536 (2005).

Apchelimov AA, Soldatova OP, Ezhova TA, Grimm B, Shestakov SV. The analysis of the ChlI 1 and ChlI 2 genes using acifluorfen-resistant mutant of Arabidopsis thaliana. Planta 225: 935-943 (2007).

Apone F, Alyeshmerni N, Wiens K, Chalmers D, Chrispeels MJ, Colucci G. The G-protein-coupled receptor GCR1 regulates DNA synthesis through activation of phosphatidylinositol-specific phospholipase C. Plant Physiol. 133: 571-579 (2003).

Apse MP, Sottosanto JB, Blumwald E. Vacuolar cation/H+ exchange, ion homeostasis, and leaf development are altered in a T-DNA insertional mutant of AtNHX1, the Arabidopsis vacuolar Na+/H+ antiporter. Plant J. 36: 229-239 (2003).

Apuya NR, Yadegari R, Fischer RL, Harada JH, Goldberg RB. RASPBERRY3 gene encodes a novel protein important for embryo development. Plant Physiol. 129: 691-705 (2002).

Apuya NR, Yadegari R, Fischer RL, Harada JJ, Zimmerman JL, Goldberg RB. The Arabidopsis embryo mutant schlepperless has a defect in the chaperonin-60alpha gene. Plant Physiol. 126: 717-730 (2001).

Arai Y, Hayashi M, Nishimura M. Proteomic identification and characterization of a novel peroxisomal adenine nucleotide transporter supplying ATP for fatty acid beta-oxidation in soybean and Arabidopsis. Plant Cell 20: 3227-3240 (2008).

Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, Marjoram P, Nordborg M. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genet. 1: e60 (2005).

Arazi T, Baum G, Snedden WA, Shelp BJ, Fromm H. Molecular and biochemical analysis of calmodulin interactions with the calmodulin-binding domain of plant glutamate decarboxylase. Plant Physiol. 108: 551-561 (1995).

Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC. Cloning and characterization of micro-RNAs from moss. Plant J. 43: 837-848 (2005).

Archacki R, Sarnowski TJ, Halibart-Puzio J, Brzeska K, Buszewicz D, Prymakowska-Bosak M, Koncz C, Jerzmanowski A. Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes. Planta 229: 1281-1292 (2009).

Arciga-Reyes L, Wootton L, Kieffer M, Davies B. UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 47: 480-489 (2006).

Arenas-Mena C, Raynal M, Borrell A, Varoquaux F, Cutanda MC, Stacy RA, Pages M, Delseny M, Culianez-Macia FA. Expression and cellular localization of Atrab28 during Arabidopsis embryogenesis. Plant Mol. Biol. 40: 355-363 (1999).

Arend M, Stinzing A, Wind C, Langer K, Latz A, Ache P, Fromm J, Hedrich R. Polar-localised poplar K(+) channel capable of controlling electrical properties of wood-forming cells. Planta 223: 140-148 (2005).

Argyros RD, Mathews DE, Chiang YH, Palmer CM, Thibault DM, Etheridge N, Argyros DA, Mason MG, Kieber JJ, Schaller GE. Type B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell 20: 2102-2116 (2008).

Ariizumi T, Hatakeyama K, Hinata K, Inatsugi R, Nishida I, Sato S, Kato T, Tabata S, Toriyama K. Disruption of the novel plant protein NEF1 affects lipid accumulation in the plastids of the tapetum and exine formation of pollen, resulting in male sterility in Arabidopsis thaliana. Plant J. 39: 170-181 (2004).

Ariizumi T, Hatakeyama K, Hinata K, Sato S, Kato T, Tabata S, Toriyama K. A novel male-sterile mutant of Arabidopsis thaliana, faceless pollen-1, produces pollen with a smooth surface and an acetolysis-sensitive exine. Plant Mol. Biol. 53: 107-116 (2003).

Ariizumi T, Kawanabe T, Hatakeyama K, Sato S, Kato T, Tabata S, Toriyama K. Ultrastructural characterization of exine development of the transient defective exine 1 mutant suggests the existence of a factor involved in constructing reticulate exine architecture from sporopollenin aggregates. Plant Cell Physiol. 49: 58-67 (2008).

Ariizumi T, Steber CM. Seed germination of GA-insensitive sleepy1 mutants does not require RGL2 protein disappearance in Arabidopsis. Plant Cell 19: 791-804 (2007).

Arimura SI, Fujimoto M, Doniwa Y, Kadoya N, Nakazono M, Sakamoto W, Tsutsumi N. Arabidopsis ELONGATED MITOCHONDRIA1 is required for localization of DYNAMIN-RELATED PROTEIN3A to mitochondrial fission sites. Plant Cell 20: 1555-1566 (2008).

Arisi AC, Cornic G, Jouanin L, Foyer CH. Overexpression of iron superoxide dismutase in transformed poplar modifies the regulation of photosynthesis at low CO2 partial pressures or following exposure to the prooxidant herbicide methyl viologen. Plant Physiol. 117: 565-574 (1998).

Armengaud P, Breitling R, Amtmann A. The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. Plant Physiol. 136: 2556-2576 (2004).

Armengaud P, Sulpice R, Miller AJ, Stitt M, Amtmann A, Gibon Y. Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots. Plant Physiol. 150: 772-785 (2009).

Armstrong AF, Badger MR, Day DA, Barthet MM, Smith PM, Millar AH, Whelan J, Atkin OK. Dynamic changes in the mitochondrial electron transport chain underpinning cold acclimation of leaf respiration. Plant Cell Environ. 31: 1156-1169 (2008).

Armstrong AF, Logan DC, Tobin AK, O'Toole P, Atkin OK. Heterogeneity of plant mitochondrial responses underpinning respiratory acclimation to the cold in Arabidopsis thaliana leaves. Plant Cell Environ. 29: 940-949 (2006).

Armstrong AF, Wardlaw KD, Atkin OK. Assessing the relationship between respiratory acclimation to the cold and photosystem II redox poise in Arabidopsis thaliana. Plant Cell Environ. 30: 1513-1522 (2007).

Armstrong GA, Runge S, Frick G, Sperling U, Apel K. Identification of NADPH:protochlorophyllide oxidoreductases A and B: a branched pathway for light-dependent chlorophyll biosynthesis in Arabidopsis thaliana. Plant Physiol. 108: 1505-1517 (1995).

Armstrong SJ, Jones GH. Meiotic cytology and chromosome behaviour in wild-type Arabidopsis thaliana. J. Exp. Bot. 54: 1-10 (2003).

Arnal N, Alban C, Quadrado M, Grandjean O, Mireau H. The Arabidopsis Bio2 protein requires mitochondrial targeting for activity. Plant Mol. Biol. 62: 471-479 (2006).

Aronsson H, Boij P, Patel R, Wardle A, Topel M, Jarvis P. Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana. Plant J. 52: 53-68 (2007).

Aronsson H, Jarvis P. A simple method for isolating import-competent Arabidopsis chloroplasts. FEBS Lett. 529: 215-220 (2002).

Aronsson H, Schottler MA, Kelly AA, Sundqvist C, Dormann P, Karim S, Jarvis P. Monogalactosyldiacylglycerol deficiency in Arabidopsis thaliana affects pigment composition in the prolamellar body and impairs thylakoid membrane energization and photoprotection in leaves. Plant Physiol. 148: 580-592 (2008).

Arrighi JF, Barre A, Ben Amor B, Bersoult A, Soriano LC, Mirabella R, de Carvalho-Niebel F, Journet EP, Gherardi M, Huguet T, Geurts R, Denarie J, Rouge P, Gough C. The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes. Plant Physiol. 142: 265-279 (2006).

Arrivault S, Guenther M, Ivakov A, Feil R, Vosloh D, van Dongen JT, Sulpice R, Stitt M. Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant J. 59: 826-839 (2009).

Arrivault S, Senger T, Kramer U. The Arabidopsis metal tolerance protein AtMTP3 maintains metal homeostasis by mediating Zn exclusion from the shoot under Fe deficiency and Zn oversupply. Plant J. 46: 861-879 (2006).

Arroyo A, Bossi F, Finkelstein RR, Leon P. Three genes that affect sugar sensing (Abscisic Acid Insensitive 4, Abscisic Acid Insensitive 5, and Constitutive Triple Response 1) are differentially regulated by glucose in Arabidopsis. Plant Physiol. 133: 231-242 (2003).

Arsovski AA, Popma TM, Haughn GW, Carpita NC, McCann MC, Western TL. AtBXL1 encodes a bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase required for pectic arabinan modification in Arabidopsis mucilage secretory cells. Plant Physiol. 150: 1219-1234 (2009).

Arsovski AA, Villota MM, Rowland O, Subramaniam R, Western TL. MUM ENHANCERS are important for seed coat mucilage production and mucilage secretory cell differentiation in Arabidopsis thaliana. J. Exp. Bot. 60: 2601-2612 (2009).

Arteca JM, Arteca RN. A multi-responsive gene encoding 1-aminocyclopropane-1-carboxylate synthase (ACS6) in mature Arabidopsis leaves. Plant Mol. Biol. 39: 209-219 (1999).

Arteca RN, Arteca JM. Effects of brassinosteroid, auxin, and cytokinin on ethylene production in Arabidopsis thaliana plants. J. Exp. Bot. 59: 3019-3026 (2008).

Asai T, Stone JM, Heard JE, Kovtun Y, Yorgey P, Sheen J, Ausubel FM. Fumonisin B1-induced cell death in Arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways. Plant Cell 12: 1823-1836 (2000).

Asakura Y, Barkan A. Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns. Plant Physiol. 142: 1656-1663 (2006).

Asakura Y, Kikuchi S, Nakai M. Non-identical contributions of two membrane-bound cpSRP components, cpFtsY and Alb3, to thylakoid biogenesis. Plant J. 56: 1007-1017 (2008).

Asami T, Min YK, Nagata N, Yamagishi K, Takatsuto S, Fujioka S, Murofushi N, Yamaguchi I, Yoshida S. Characterization of brassinazole, a triazole-type brassinosteroid biosynthesis inhibitor. Plant Physiol. 123: 93-100 (2000).

Asamizu E, Nakamura Y, Sato S, Tabata S. Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. Plant Mol. Biol. 54: 405-414 (2004).

Asamizu E, Shimoda Y, Kouchi H, Tabata S, Sato S. A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus. Plant Physiol. 147: 2030-2040 (2008).

Asano T, Masuda D, Yasuda M, Nakashita H, Kudo T, Kimura M, Yamaguchi K, Nishiuchi T. AtNFXL1, an Arabidopsis homologue of the human transcription factor NF-X1, functions as a negative regulator of the trichothecene phytotoxin-induced defense response. Plant J. 53: 450-464 (2008).

Asano T, Yoshioka Y, Kurei S, Sakamoto W, Machida Y; Sodmergen. A mutation of the CRUMPLED LEAF gene that encodes a protein localized in the outer envelope membrane of plastids affects the pattern of cell division, cell differentiation, and plastid division in Arabidopsis. Plant J. 38: 448-459 (2004).

Ascencio-Ibanez JT, Sozzani R, Lee TJ, Chu TM, Wolfinger RD, Cella R, Hanley-Bowdoin L. Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol. 148: 436-454 (2008).

Ascenzi R, Gantt JS. A drought-stress-inducible histone gene in Arabidopsis thaliana is a member of a distinct class of plant linker histone variants. Plant Mol. Biol. 34: 629-641 (1997).

Ascenzi R, Gantt JS. Molecular genetic analysis of the drought-inducible linker histone variant in Arabidopsis thaliana. Plant Mol. Biol. 41: 159-169 (1999).

Ashfield T, Ong LE, Nobuta K, Schneider CM, Innes RW. Convergent evolution of disease resistance gene specificity in two flowering plant families. Plant Cell 16: 309-318 (2004).

Assaad FF. Of weeds and men: what genomes teach us about plant cell biology. Curr. Opin. Plant Biol. 4: 478-487 (2001).

Assmann SM. Plant G proteins, phytohormones, and plasticity: three questions and a speculation. Sci. STKE 2004: re20 (2004).

Assmann SM. OPEN STOMATA1 opens the door to ABA signaling in Arabidopsis guard cells. Trends Plant Sci. 8: 151-153 (2003).

Assmann SM, Snyder JA, Lee Y-RL. ABA-deficient (aba1) and ABA-insensitive (abi1-1, abi2-1) mutants of Arabidopsis have a wild-type stomatal response to humidity. Plant Cell Environ. 23: 387-395 (2000).

Assuncao AG, Pieper B, Vromans J, Lindhout P, Aarts MG, Schat H. Construction of a genetic linkage map of Thlaspi caerulescens and quantitative trait loci analysis of zinc accumulation. New Phytol. 170: 21-32 (2006).

Assuncao AGL, Da Costa Martins P, De Folter S, Vooijs R, Schat H, Aarts MGM. Elevated expression of metal transporter genes in three accessions of the metal hyperaccumulator Thlaspi caerulescens. Plant Cell Environ. 24: 217-226 (2001).

Astot C, Dolezal K, Nordstrom A, Wang Q, Kunkel T, Moritz T, Chua NH, Sandberg G. An alternative cytokinin biosynthesis pathway Proc. Natl. Acad. Sci. U.S.A. 97: 14778-14783 (2000).

Atanassov I, Russinova E, Antonov L, Atanassov A. Expression of an anther-specific chalcone synthase-like gene is correlated with uninucleate microspore development in Nicotiana sylvestris. Plant Mol. Biol. 38: 1169-1178 (1998).

Atanassova R, Flenet M, Gigot C, Chaubet N. Functional analysis of the promoter region of a maize (Zea mays L.) H3 histone gene in transgenic Arabidopsis thaliana. Plant Mol. Biol. 37: 275-285 (1998).

Athwal GS, Huber SC. Divalent cations and polyamines bind to loop 8 of 14-3-3 proteins, modulating their interaction with phosphorylated nitrate reductase. Plant J. 29: 119-129 (2002).

Atta R, Laurens L, Boucheron-Dubuisson E, Guivarc'h A, Carnero E, Giraudat-Pautot V, Rech P, Chriqui D. Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grown in vitro. Plant J. 57: 626-644 (2009).

Attallah CV, Welchen E, Pujol C, Bonnard G, Gonzalez DH. Characterization of Arabidopsis thaliana genes encoding functional homologues of the yeast metal chaperone Cox19p, involved in cytochrome c oxidase biogenesis. Plant Mol. Biol. 65: 343-355 (2007).

Attaran E, Zeier TE, Griebel T, Zeier J. Methyl salicylate production and jasmonate signaling are not essential for systemic acquired resistance in Arabidopsis. Plant Cell 21: 954-971 (2009).

Attieh J, Djiana R, Koonjul P, Etienne C, Sparace SA, Saini HS. Cloning and functional expression of two plant thiol methyltransferases: a new class of enzymes involved in the biosynthesis of sulfur volatiles. Plant Mol. Biol. 50: 511-521 (2002).

Attieh J, Sparace SA, Saini HS. Purification and properties of multiple isoforms of a novel thiol methyltransferase involved in the production of volatile sulfur compounds from Brassica oleracea. Arch. Biochem. Biophys. 380: 257-266 (2000).

Aubourg S, Boudet N, Kreis M, Lecharny A. In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants. Plant Mol. Biol. 42: 603-613 (2000).

Aubry C, Morere-Le Paven MC, Chateigner-Boutin AL, Teulat-Merah B, Ricoult C, Peltier D, Jalouzot R, Limami AM. A gene encoding a germin-like protein, identified by a cDNA-AFLP approach, is specifically expressed during germination of Phaseolus vulgaris. Planta 217: 466-475 (2003).

Aubry S, Mani J, Hortensteiner S. Stay-green protein, defective in Mendel's green cotyledon mutant, acts independent and upstream of pheophorbide a oxygenase in the chlorophyll catabolic pathway. Plant Mol. Biol. 67: 243-256 (2008).

Audran C, Liotenberg S, Gonneau M, North H, Frey A, Tap-Waksman K, Vartanian N, Marion-Poll A. Localisation and expression of zeaxanthin epoxidase mRNA in Arabidopsis in response to drought stress and during seed development. Aust. J. Plant Physiol. 28: 1161-1173 (2001).

Aufsatz W, Amry D, Grimm C. The ECS1 gene of Arabidopsis encodes a plant cell wall-associated protein and is potentially linked to a locus influencing resistance to Xanthomonas campestris. Plant Mol. Biol. 38: 965-976 (1998).

Aufsatz W, Mette MF, Matzke AJ, Matzke M. The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides. Plant Mol. Biol. 54: 793-804 (2004).

Aukerman MJ, Sakai H. Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15: 2730-2741 (2003).

Auldridge ME, Block A, Vogel JT, Dabney-Smith C, Mila I, Bouzayen M, Magallanes-Lundback M, DellaPenna D, McCarty DR, Klee HJ. Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family. Plant J. 45: 982-993 (2006).

Aung K, Lin SI, Wu CC, Huang YT, Su CL, Chiou TJ. pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol. 141: 1000-1011 (2006).

Ausubel F ed. Summaries of National Science Foundation-sponsored Arabidopsis 2010 projects and National Science Foundation-sponsored plant genome projects that are generating Arabidopsis resources for the community. Plant Physiol. 129: 394-437 (2002).

Ausubel F, Benfey P. Arabidopsis functional genomics. Plant Physiol. 129: 393 (2002).

Ausubel FM. Arabidopsis genome. A milestone in plant biology. Plant Physiol. 124: 1451-1454 (2000).

Autran D, Huanca-Mamani W, Vielle-Calzada JP. Genomic imprinting in plants: the epigenetic version of an Oedipus complex. Curr. Opin. Plant Biol. 8: 19-25 (2005).

Avci U, Earl Petzold H, Ismail IO, Beers EP, Haigler CH. Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots. Plant J. 56: 303-315 (2008).

Avdiushko S, Croft KP, Brown GC, Jackson DM, Hamilton-Kemp TR, Hildebrand D. Effect of volatile methyl jasmonate on the oxylipin pathway in tobacco, cucumber, and Arabidopsis. Plant Physiol. 109: 1227-1230 (1995).

Avenson TJ, Cruz JA, Kanazawa A, Kramer DM. Regulating the proton budget of higher plant photosynthesis. Proc. Natl. Acad. Sci. U.S.A. 102: 9709-9713 (2005).

Aviezer-Hagai K, Skovorodnikova J, Galigniana M, Farchi-Pisanty O, Maayan E, Bocovza S, Efrat Y, von Koskull-Doring P, Ohad N, Breiman A. Arabidopsis immunophilins ROF1 (AtFKBP62) and ROF2 (AtFKBP65) exhibit tissue specificity, are heat-stress induced, and bind HSP90. Plant Mol. Biol. 63: 237-255 (2007).

Avila C, Canton FR, Barnestein P, Suarez MF, Marraccini P, Rey M, Humara JM, Ordas R, Canovas FM. The promoter of a cytosolic glutamine synthetase gene from the conifer Pinus sylvestris is active in cotyledons of germinating seeds and light-regulated in transgenic Arabidopsis thaliana. Physiol. Plant. 112: 388-396 (2001).

Avila C, Perez-Rodriguez J, Canovas FM. Molecular characterization of a receptor-like protein kinase gene from pine (Pinus sylvestris L.). Planta 224: 12-19 (2006).

Avila EL, Brown M, Pan S, Desikan R, Neill SJ, Girke T, Surpin M, Raikhel NV. Expression analysis of Arabidopsis vacuolar sorting receptor 3 reveals a putative function in guard cells. J. Exp. Bot. 59: 1149-1161 (2008).

Avisar D, Abu-Abied M, Belausov E, Sadot E, Hawes C, Sparkes IA. A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles. Plant Physiol. 150: 700-709 (2009).

Avonce N, Leyman B, Mascorro-Gallardo JO, Van Dijck P, Thevelein JM, Iturriaga G. The Arabidopsis trehalose-6-P synthase AtTPS1 gene is a regulator of glucose, abscisic acid, and stress signaling. Plant Physiol. 136: 3649-3659 (2004).

Avonce N, Leyman B, Thevelein J, Iturriaga G. Trehalose metabolism and glucose sensing in plants. Biochem. Soc. Trans. 33: 276-279 (2005).

Avsian-Kretchmer O, Cheng JC, Chen L, Moctezuma E, Sung ZR. Indole acetic acid distribution coincides with vascular differentiation pattern during Arabidopsis leaf ontogeny. Plant Physiol. 130: 199-209 (2002).

Awazuhara M, Fujiwara T, Hayashi H, Watanabe-Takahashi A, Takahashi H, Saito K. The function of SULTR2;1 sulfate transporter during seed development in Arabidopsis thaliana. Physiol. Plant. 125: 95-105 (2005).

Axelsen KB, Palmgren MG. Inventory of the superfamily of P-type ion pumps in Arabidopsis. Plant Physiol. 126: 696-706 (2001).

Axtell MJ, Bartel DP. Antiquity of microRNAs and their targets in land plants. Plant Cell 17: 1658-1673 (2005).

Ay N, Irmler K, Fischer A, Uhlemann R, Reuter G, Humbeck K. Epigenetic programming via histone methylation at WRKY53 controls leaf senescence in Arabidopsis thaliana. Plant J. 58: 333-346 (2009).

Ayliffe MA, Mitchell HJ, Deuschle K, Pryor AJ. Comparative analysis in cereals of a key proline catabolism gene. Mol. Genet. Genomics 274: 494-505 (2005).

Ayliffe MA, Pallotta M, Langridge P, Pryor AJ. A barley activation tagging system. Plant Mol. Biol. 64: 329-347 (2007).

Ayliffe MA, Roberts JK, Mitchell HJ, Zhang R, Lawrence GJ, Ellis JG, Pryor TJ. A plant gene up-regulated at rust infection sites. Plant Physiol. 129: 169-180 (2002).

Ayre BG, Blair JE, Turgeon R. Functional and phylogenetic analyses of a conserved regulatory program in the phloem of minor veins. Plant Physiol. 133: 1229-1239 (2003).

Ayre BG, Turgeon R. Graft transmission of a floral stimulant derived from CONSTANS. Plant Physiol. 135: 2271-2278 (2004).

Azevedo RA, Lea PJ. Lysine metabolism in higher plants. Amino Acids 20: 261-279 (2001).

Azhagiri AK, Maliga P. Exceptional paternal inheritance of plastids in Arabidopsis suggests that low-frequency leakage of plastids via pollen may be universal in plants. Plant J. 52: 817-823 (2007).

Azimzadeh J, Nacry P, Christodoulidou A, Drevensek S, Camilleri C, Amiour N, Parcy F, Pastuglia M, Bouchez D. Arabidopsis TONNEAU1 proteins are essential for preprophase band formation and interact with centrin. Plant Cell 20: 2146-2159 (2008).

Azpiroz R, Wu Y, LoCascio JC, Feldmann KA. An Arabidopsis brassinosteroid-dependent mutant is blocked in cell elongation. Plant Cell 10: 219-230 (1998).

Baba K, Schmidt J, Espinosa-Ruiz A, Villarejo A, Shiina T, Gardestrom P, Sane AP, Bhalerao RP. Organellar gene transcription and early seedling development are affected in the rpoT;2 mutant of Arabidopsis. Plant J. 38: 38-48 (2004).

Babiychuk E, Muller F, Eubel H, Braun HP, Frentzen M, Kushnir S. Arabidopsis phosphatidylglycerophosphate synthase 1 is essential for chloroplast differentiation, but is dispensable for mitochondrial function. Plant J. 33: 899-909 (2003).

Babourina O, Hawkins B, Lew RR, Newman I, Shabala S. K+ transport by Arabidopsis root hairs at low pH. Aust. J. Plant Physiol. 28: 635-641 (2001).

Babourina O, Rengel Z. Uptake of aluminium into Arabidopsis root cells measured by fluorescent lifetime imaging. Ann. Bot. (Lond.) 104: 189-195 (2009).

Babourina OK, Newman IA, Shabala SN. Electrophysiological localization of blue light sensory sites in etiolated dicotyledon seedlings. Plant Cell Environ. 26: 1505-1514 (2003).

Bachmann M, Huber JL, Athwal GS, Wu K, Ferl RJ, Huber SC. 14-3-3 proteins associate with the regulatory phosphorylation site of spinach leaf nitrate reductase in an isoform-specific manner and reduce dephosphorylation of Ser-543 by endogenous protein phosphatases. FEBS Lett. 398: 26-30 (1996).

Bachmann M, Huber JL, Liao PC, Gage DA, Huber SC. The inhibitor protein of phosphorylated nitrate reductase from spinach (Spinacia oleracea) leaves is a 14-3-3 protein. FEBS Lett. 387: 127-131 (1996).

Badawi GH, Kawano N, Yamauchi Y, Shimada E, Sasaki R, Kubo A, Tanaka K. Over-expression of ascorbate peroxidase in tobacco chloroplasts enhances the tolerance to salt stress and water deficit. Physiol. Plant. 121: 231-238 (2004).

Badawi M, Reddy YV, Agharbaoui Z, Tominaga Y, Danyluk J, Sarhan F, Houde M. Structure and functional analysis of wheat ICE (Inducer of CBF Expression) genes. Plant Cell Physiol. 49: 1237-1249 (2008).

Bade J, van Grinsven E, Custers J, Hoekstra S, Ponstein A. T-DNA tagging in Brassica napus as an efficient tool for the isolation of new promoters for selectable marker genes. Plant Mol. Biol. 52: 53-68 (2003).

Badejo AA, Eltelib HA, Fukunaga K, Fujikawa Y, Esaka M. Increase in ascorbate content of transgenic tobacco plants overexpressing the acerola (Malpighia glabra) phosphomannomutase gene. Plant Cell Physiol. 50: 423-428 (2009).

Badejo AA, Tanaka N, Esaka M. Analysis of GDP-D-mannose pyrophosphorylase gene promoter from acerola (Malpighia glabra) and increase in ascorbate content of transgenic tobacco expressing the acerola gene. Plant Cell Physiol. 49: 126-132 (2008).

Badri DV, Loyola-Vargas VM, Broeckling CD, De-la-Pena C, Jasinski M, Santelia D, Martinoia E, Sumner LW, Banta LM, Stermitz F, Vivanco JM. Altered profile of secondary metabolites in the root exudates of Arabidopsis ATP-binding cassette transporter mutants. Plant Physiol. 146: 762-771 (2008).

Bae H, Kim MS, Sicher RC, Bae HJ, Bailey BA. Necrosis- and ethylene-inducing peptide from Fusarium oxysporum induces a complex cascade of transcripts associated with signal transduction and cell death in Arabidopsis. Plant Physiol. 141: 1056-1067 (2006).

Bae HH, Herman E, Bailey B, Bae HJ, Sicher R. Exogenous trehalose alters Arabidopsis transcripts involved in cell wall modification, abiotic stress, nitrogen metabolism, and plant defense. Physiol. Plant. 125: 114-126 (2005).

Bae MS, Cho EJ, Choi EY, Park OK. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J. 36: 652-663 (2003).

Baek D, Nam J, Koo YD, Kim DH, Lee J, Jeong JC, Kwak SS, Chung WS, Lim CO, Bahk JD, Hong JC, Lee SY, Kawai-Yamada M, Uchimiya H, Yun DJ. Bax-induced cell death of Arabidopsis is meditated through reactive oxygen-dependent and -independent processes. Plant Mol. Biol. 56: 15-27 (2004).

Baek JM, Han P, Iandolino A, Cook DR. Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice. Plant Mol. Biol. 67: 499-510 (2008).

Baena-Gonzalez E, Rolland F, Thevelein JM, Sheen J. A central integrator of transcription networks in plant stress and energy signalling. Nature 448: 938-942 (2007).

Baerr JN, Thomas JD, Taylor BG, Rodermel SR, Gray GR. Differential photosynthetic compensatory mechanisms exist in the immutans mutant of Arabidopsis thaliana. Physiol. Plant. 124: 390-402 (2005).

Bagherieh-Najjar MB, de Vries OM, Hille J, Dijkwel PP. Arabidopsis RecQl4A suppresses homologous recombination and modulates DNA damage responses. Plant J. 43: 789-798 (2005).

Bagherieh-Najjar MB, de Vries OM, Kroon JT, Wright EL, Elborough KM, Hille J, Dijkwel PP. Arabidopsis RecQsim, a plant-specific member of the RecQ helicase family, can suppress the MMS hypersensitivity of the yeast sgs1 mutant. Plant Mol. Biol. 52: 273-284 (2003).

Baginsky S, Gruissem W. Arabidopsis thaliana proteomics: from proteome to genome. J. Exp. Bot. 57: 1485-1491 (2006).

Baginsky S, Gruissem W. Chloroplast proteomics: potentials and challenges. J. Exp. Bot. 55: 1213-1220 (2004).

Bagnall DJ, King RW. Phytochrome, photosynthesis and flowering of Arabidopsis thaliana: photophysiological studies using mutants and transgenic lines. Aust. J. Plant Physiol. 28: 401-408 (2001).

Bagnall DJ, King RW, Hangarter RP. Blue-light promotion of flowering is absent in hy4 mutants of Arabidopsis. Planta 200: 278-280 (1996).

Bagnall DJ, King RW, Whitelam GC, Boylan MT, Wagner D, Quail PH. Flowering responses to altered expression of phytochrome in mutants and transgenic lines of Arabidopsis thaliana (L.) Heynh. Plant Physiol. 108: 1495-1503 (1995).

Bai X, Peirson BN, Dong F, Xue C, Makaroff CA. Isolation and characterization of SYN1, a RAD21-like gene essential for meiosis in Arabidopsis. Plant Cell 11: 417-430 (1999).

Baier M, Dietz KJ. Protective function of chloroplast 2-cysteine peroxiredoxin in photosynthesis. Evidence from transgenic Arabidopsis. Plant Physiol. 119: 1407-1414 (1999).

Baier M, Hemmann G, Holman R, Corke F, Card R, Smith C, Rook F, Bevan MW. Characterization of mutants in Arabidopsis showing increased sugar-specific gene expression, growth, and developmental responses. Plant Physiol. 134: 81-91 (2004).

Baier M, Kandlbinder A, Golldack D, Dietz KJ. Oxidative stress and ozone: perception, signalling and response. Plant Cell Environ. 28: 1012-1020 (2005).

Baier M, Noctor G, Foyer CH, Dietz KJ. Antisense suppression of 2-cysteine peroxiredoxin in Arabidopsis specifically enhances the activities and expression of enzymes associated with ascorbate metabolism but not glutathione metabolism. Plant Physiol. 124: 823-832 (2000).

Bailey PC, Dicks J, Wang TL, Martin C. IT3F: a web-based tool for functional analysis of transcription factors in plants. Phytochemistry 69: 2417-2425 (2008).

Bailey S, Horton P, Walters RG. Acclimation of Arabidopsis thaliana to the light environment: the relationship between photosynthetic function and chloroplast composition. Planta 218: 793-802 (2004).

Bailey S, Walters RG, Jansson S, Horton P. Acclimation of Arabidopsis thaliana to the light environment: the existence of separate low light and high light responses. Planta 213: 794-801 (2001).

Bainbridge K, Sorefan K, Ward S, Leyser O. Hormonally controlled expression of the Arabidopsis MAX4 shoot branching regulatory gene. Plant J. 44: 569-580 (2005).

Bais HP, Fall R, Vivanco JM. Biocontrol of Bacillus subtilis against infection of Arabidopsis roots by Pseudomonas syringae is facilitated by biofilm formation and surfactin production. Plant Physiol. 134: 307-319 (2004).

Bais HP, Vepachedu R, Gilroy S, Callaway RM, Vivanco JM. Allelopathy and exotic plant invasion: from molecules and genes to species interactions. Science 301: 1377-1380 (2003).

Bajaj S, Targolli J, Liu LF, Ho THD, Wu R. Transgenic approaches to increase dehydration-stress tolerance in plants. Mol. Breed. 5: 493-503 (1999).

Bajic VB, Veronika M, Veladandi PS, Meka A, Heng MW, Rajaraman K, Pan H, Swarup S. Dragon Plant Biology Explorer. A text-mining tool for integrating associations between genetic and biochemical entities with genome annotation and biochemical terms lists. Plant Physiol. 138: 1914-1925 (2005).

Bak S, Feyereisen R. The involvement of two P450 enzymes, CYP83B1 and CYP83A1, in auxin homeostasis and glucosinolate biosynthesis. Plant Physiol. 127: 108-118 (2001).

Bak S, Nielsen HL, Halkier BA. The presence of CYP79 homologues in glucosinolate-producing plants shows evolutionary conservation of the enzymes in the conversion of amino acid to aldoxime in the biosynthesis of cyanogenic glucosides and glucosinolates. Plant Mol. Biol. 38: 725-734 (1998).

Bak S, Olsen CE, Halkier BA, Moller BL. Transgenic tobacco and Arabidopsis plants expressing the two multifunctional sorghum cytochrome P450 enzymes, CYP79A1 and CYP71E1, are cyanogenic and accumulate metabolites derived from intermediates in dhurrin biosynthesis. Plant Physiol. 123: 1437-1448 (2000).

Bak S, Olsen CE, Petersen BL, Moller BL, Halkier BA. Metabolic engineering of p-hydroxybenzylglucosinolate in Arabidopsis by expression of the cyanogenic CYP79A1 from Sorghum bicolor. Plant J. 20: 663-671 (1999).

Bak S, Tax FE, Feldmann KA, Galbraith DW, Feyereisen R. CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis. Plant Cell 13: 101-111 (2001).

Baker A, Sparkes IA. Peroxisome protein import: some answers, more questions. Curr. Opin. Plant Biol. 8: 640-647 (2005).

Bakker EG, Toomajian C, Kreitman M, Bergelson J. A genome-wide survey of R gene polymorphisms in Arabidopsis. Plant Cell 18: 1803-1818 (2006).

Balague C, Lin B, Alcon C, Flottes G, Malmstrom S, Kohler C, Neuhaus G, Pelletier G, Gaymard F, Roby D. HLM1, an essential signaling component in the hypersensitive response, is a member of the cyclic nucleotide-gated channel ion channel family. Plant Cell 15: 365-379 (2003).

Balakumar T, Selvakumar V, Sathiameena K, Ilanchezhian CM, Paliwal K. UV-B radiation mediated alterations in the nitrate assimilation pathway of crop plants. 1. Kinetic characteristics of nitrate reductase. Photosynthetica 37: 459-467 (1999).

Balandin T, Castresana C. AtCOX17, an Arabidopsis homolog of the yeast copper chaperone COX17. Plant Physiol. 129: 1852-1857 (2002).

Balanza V, Navarrete M, Trigueros M, Ferrandiz C. Patterning the female side of Arabidopsis: the importance of hormones. J. Exp. Bot. 57: 3457-3469 (2006).

Baldwin A, Wardle A, Patel R, Dudley P, Park SK, Twell D, Inoue K, Jarvis P. A molecular-genetic study of the Arabidopsis TOC75 gene family. Plant Physiol. 138: 715-733 (2005).

Balk J, Chew SK, Leaver CJ, McCabe PF. The intermembrane space of plant mitochondria contains a DNase activity that may be involved in programmed cell death. Plant J. 34: 573-583 (2003).

Ball L, Accotto GP, Bechtold U, Creissen G, Funck D, Jimenez A, Kular B, Leyland N, Mejia-Carranza J, Reynolds H, Karpinski S, Mullineaux PM. Evidence for a direct link between glutathione biosynthesis and stress defense gene expression in Arabidopsis. Plant Cell 16: 2448-2462 (2004).

Ballere CL. Circadian maestro leads plant gene expression symphony. Trends Plant Sci. 6: 96-97 (2001).

Ballottari M, Dall'Osto L, Morosinotto T, Bassi R. Contrasting behavior of higher plant photosystem I and II antenna systems during acclimation. J. Biol. Chem. 282: 8947-8958 (2007).

Ballottari M, Govoni C, Caffarri S, Morosinotto T. Stoichiometry of LHCI antenna polypeptides and characterization of gap and linker pigments in higher plants photosystem I. Eur. J. Biochem. 271: 4659-4665 (2004).

Bancos S, Nomura T, Sato T, Molnar G, Bishop GJ, Koncz C, Yokota T, Nagy F, Szekeres M. Regulation of transcript levels of the Arabidopsis cytochrome P450 genes involved in brassinosteroid biosynthesis. Plant Physiol. 130: 504-513 (2002).

Bancos S, Szatmari AM, Castle J, Kozma-Bognar L, Shibata K, Yokota T, Bishop GJ, Nagy F, Szekeres M. Diurnal regulation of the brassinosteroid-biosynthetic CPD gene in Arabidopsis. Plant Physiol. 141: 299-309 (2006).

Bang WY, Jeong IS, Kim DW, Im CH, Ji C, Hwang SM, Kim SW, Son YS, Jeong J, Shiina T, Bahk JD. Role of Arabidopsis CHL27 protein for photosynthesis, chloroplast development, and gene expression profiling. Plant Cell Physiol. 49: 1350-1363 (2008).

Bang WY, Kim SW, Ueda A, Vikram M, Yun DJ, Bressan RA, Hasegawa PM, Bahk JD, Koiwa H. Arabidopsis carboxyl-terminal domain phosphatase-like isoforms share common catalytic and interaction domains but have distinct in planta functions. Plant Physiol. 142: 586-594 (2006).

Banilas G, Nikiforiadis A, Makariti I, Moressis A, Hatzopoulos P. Discrete roles of a microsomal linoleate desaturase gene in olive identified by spatiotemporal transcriptional analysis. Tree Physiol. 27: 481-490 (2007).

Banti V, Loreti E, Novi G, Santaniello A, Alpi A, Perata P. Heat acclimation and cross-tolerance against anoxia in Arabidopsis. Plant Cell Environ. 31: 1029-1037 (2008).

Bao F, Shen J, Brady SR, Muday GK, Asami T, Yang Z. Brassinosteroids interact with auxin to promote lateral root development in Arabidopsis. Plant Physiol. 134: 1624-1631 (2004).

Bao X, Focke M, Pollard M, Ohlrogge J. Understanding in vivo carbon precursor supply for fatty acid synthesis in leaf tissue. Plant J. 22: 39-50 (2000).

Bao X, Franks RG, Levin JZ, Liu Z. Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems. Plant Cell 16: 1478-1489 (2004).

Bao X, Shorrosh BS, Ohlrogge JB. Isolation and characterization of an Arabidopsis biotin carboxylase gene and its promoter. Plant Mol. Biol. 35: 539-550 (1997).

Bar M, Aharon M, Benjamin S, Rotblat B, Horowitz M, Avni A. AtEHDs, novel Arabidopsis EH-domain containing proteins involved in endocytosis. Plant J. 55: 1025-1038 (2008).

Bar-Nun N, Sachs T, Mayer AM. A role for IAA in the infection of Arabidopsis thaliana by Orobanche aegyptiaca. Ann. Bot. (Lond.) 101: 261-265 (2008).

Bar-Peled M, Conceicao A, Frigerio L, Raikhel NV. Expression and regulation of aERD2, a gene encoding the KDEL receptor homolog in plants, and other genes encoding proteins involved in ER-golgi vesicular trafficking. Plant Cell 7: 667-676 (1995).

Bar-Peled M, Raikhel NV. Characterization of AtSEC12 and AtSAR1. Proteins likely involved in endoplasmic reticulum and Golgi transport. Plant Physiol. 114: 315-324 (1997).

Barabas NK, Omarov RT, Erdei L, Lips SH. Distribution of the Mo-enzymes aldehyde oxidase, xanthine dehydrogenase and nitrate reductase in maize (Zea mays L.) nodal roots as affected by nitrogen and salinity. Plant Sci. 155: 49-58 (2000).

Barakat A, Szick-Miranda K, Chang IF, Guyot R, Blanc G, Cooke R, Delseny M, Bailey-Serres J. The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Plant Physiol. 127: 398-415 (2001).

Barakat A, Wall K, Leebens-Mack J, Wang YJ, Carlson JE, Depamphilis CW. Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plants. Plant J. 51: 991-1003 (2007).

Barazesh S, McSteen P. Hormonal control of grass inflorescence development. Trends Plant Sci. 13: 656-662 (2008).

Barbagallo RP, Oxborough K, Pallett KE, Baker NR. Rapid, noninvasive screening for perturbations of metabolism and plant growth using chlorophyll fluorescence imaging. Plant Physiol. 132: 485-493 (2003).

Barbier GG, Campbell WH. Viscosity effects on eukaryotic nitrate reductase activity. J. Biol. Chem. 280: 26049-26054 (2005).

Barbier-Brygoo H, Vinauger M, Colcombet J, Ephritikhine G, Frachisse J, Maurel C. Anion channels in higher plants: functional characterization, molecular structure and physiological role. Biochim. Biophys. Acta 1465: 199-218 (2000).

Barbour MM, Farquhar GD. Do pathways of water movement and leaf anatomical dimensions allow development of gradients in (H2O)-O-18 between veins and the sites of evaporation within leaves?. Plant Cell Environ. 27: 107-121 (2004).

Barcala M, García A, Cubas P, Almoguera C, Jordano J, Fenoll C, Escobar C. Distinct heat-shock element arrangements that mediate the heat shock, but not the late-embryogenesis induction of small heat-shock proteins, correlate with promoter activation in root-knot nematode feeding cells. Plant Mol. Biol. 66: 151-164 (2008).

Barczak AJ, Zhao J, Pruitt KD, Last RL. 5-Fluoroindole resistance identifies tryptophan synthase beta subunit mutants in Arabidopsis thaliana. Genetics 140: 303-313 (1995).

Barg R, Sobolev I, Eilon T, Gur A, Chmelnitsky I, Shabtai S, Grotewold E, Salts Y. The tomato early fruit specific gene Lefsm1 defines a novel class of plant-specific SANT/MYB domain proteins. Planta 221: 197-211 (2005).

Bargmann BO, Laxalt AM, Riet BT, van Schooten B, Merquiol E, Testerink C, Haring MA, Bartels D, Munnik T. Multiple PLDS required for high salinity and water-deficit tolerance in plants. Plant Cell Physiol. 50: 78-89 (2009).

Bargmann BO, Laxalt AM, ter Riet B, Testerink C, Merquiol E, Mosblech A, Leon-Reyes A, Pieterse CM, Haring MA, Heilmann I, Bartels D, Munnik T. Reassessing the role of phospholipase D in the Arabidopsis wounding response. Plant Cell Environ. 32: 837-850 (2009).

Bari R, Datt Pant B, Stitt M, Scheible WR. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol. 141: 988-999 (2006).

Bari R, Kebeish R, Kalamajka R, Rademacher T, Peterhansel C. A glycolate dehydrogenase in the mitochondria of Arabidopsis thaliana. J. Exp. Bot. 55: 623-630 (2004).

Bariola PA, MacIntosh GC, Green PJ. Regulation of S-like ribonuclease levels in Arabidopsis. Antisense inhibition of RNS1 or RNS2 elevates anthocyanin accumulation. Plant Physiol. 119: 331-342 (1999).

Barjaktarovic Z, Nordheim A, Lamkemeyer T, Fladerer C, Madlung J, Hampp R. Time-course of changes in amounts of specific proteins upon exposure to hyper-g, 2-D clinorotation, and 3-D random positioning of Arabidopsis cell cultures. J. Exp. Bot. 58: 4357-4363 (2007).

Barjaktarovic Z, Schutz W, Madlung J, Fladerer C, Nordheim A, Hampp R. Changes in the effective gravitational field strength affect the state of phosphorylation of stress-related proteins in callus cultures of Arabidopsis thaliana. J. Exp. Bot. 60: 779-789 (2009).

Barkan L, Vijayan P, Carlsson AS, Mekhedov S, Browse J. A suppressor of fab1 challenges hypotheses on the role of thylakoid unsaturation in photosynthetic function. Plant Physiol. 141: 1012-1020 (2006).

Barker GC, Larson TR, Graham IA, Lynn JR, King GJ. Novel insights into seed fatty acid synthesis and modification pathways from genetic diversity and quantitative trait Loci analysis of the brassica C genome. Plant Physiol. 144: 1827-1842 (2007).

Barker JH, Slocombe SP, Ball KL, Hardie DG, Shewry PR, Halford NG. Evidence that barley 3-hydroxy-3-methylglutaryl-coenzyme A reductase kinase is a member of the sucrose nonfermenting-1-related protein kinase family. Plant Physiol. 112: 1141-1149 (1996).

Barker L, Kuhn C, Weise A, Schulz A, Gebhardt C, Hirner B, Hellmann H, Schulze W, Ward JM, Frommer WB. SUT2, a putative sucrose sensor in sieve elements. Plant Cell 12: 1153-1164 (2000).

Barkla BJ, Vera-Estrella R, Pantoja O. Towards the production of salt-tolerant crops. Adv. Exp. Med. Biol. 464: 77-89 (1999).

Barley K. Why hypocotyl extension mutants need to be characterized at the cell level: a case study of axr3-1. J. Exp. Bot. 55: 1071-1078 (2004).

Barnes S. Comparing Arabidopsis to other flowering plants. Curr. Opin. Plant Biol. 5: 128-134 (2002).

Barone P, Rosellini D, Lafayette P, Bouton J, Veronesi F, Parrott W. Bacterial citrate synthase expression and soil aluminum tolerance in transgenic alfalfa. Plant Cell Rep. 27: 893-901 (2008).

Baroux C, Fransz P, Grossniklaus U. Nuclear fusions contribute to polyploidization of the gigantic nuclei in the chalazal endosperm of Arabidopsis. Planta 220: 38-46 (2004).

Baroux C, Pecinka A, Fuchs J, Schubert I, Grossniklaus U. The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization. Plant Cell 19: 1782-1794 (2007).

Barow M, Meister A. Endopolyploidy in seed plants is differently correlated to systematics, organ, life strategy and genome size. Plant Cell Environ. 26: 571-584 (2003).

Barr J, White WS, Chen L, Bae H, Rodermel S. The GHOST terminal oxidase regulates developmental programming in tomato fruit. Plant Cell Environ. 27: 840-852 (2004).

Barrell PJ, Grossniklaus U. Confocal microscopy of whole ovules for analysis of reproductive development: the elongate1 mutant affects meiosis II. Plant J. 43: 309-320 (2005).

Barrero JM, Piqueras P, Gonzalez-Guzman M, Serrano R, Rodriguez PL, Ponce MR, Micol JL. A mutational analysis of the ABA1 gene of Arabidopsis thaliana highlights the involvement of ABA in vegetative development. J. Exp. Bot. 56: 2071-2083 (2005).

Barrero JM, Rodriguez PL, Quesada V, Piqueras P, Ponce MR, Micol JL. Both abscisic acid (ABA)-dependent and ABA-independent pathways govern the induction of NCED3, AAO3 and ABA1 in response to salt stress. Plant Cell Environ. 29: 2000-2008 (2006).

Barrero RA, Umeda M, Yamamura S, Uchimiya H. Arabidopsis CAP regulates the actin cytoskeleton necessary for plant cell elongation and division. Plant Cell 14: 149-163 (2002).

Barrero RA, Umeda M, Yamamura S, Uchimiya H. Over-expression of Arabidopsis CAP causes decreased cell expansion leading to organ size reduction in transgenic tobacco plants. Ann. Bot. (Lond.) 91: 599-603 (2003).

Barroco RM, Van Poucke K, Bergervoet JH, De Veylder L, Groot SP, Inze D, Engler G. The role of the cell cycle machinery in resumption of postembryonic development. Plant Physiol. 137: 127-140 (2005).

Barroso C, Romero LC, Cejudo FJ, Vega JM, Gotor C. Salt-specific regulation of the cytosolic O-acetylserine(thiol)lyase gene from Arabidopsis thaliana is dependent on abscisic acid. Plant Mol. Biol. 40: 729-736 (1999).

Barroso C, Vega JM, Gotor C. A new member of the cytosolic O-acetylserine(thiol)lyase gene family in Arabidopsis thaliana. FEBS Lett. 363: 1-5 (1995).

Bartel B, Fink GR. Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 91: 6649-6653 (1994).

Bartel B, Fink GR. ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates. Science 268: 1745-1748 (1995).

Bartel B, Last RL. Weed power, translating Arabidopsis. Plant Physiol. 135: 601 (2004).

Barth C, Conklin PL. The lower cell density of leaf parenchyma in the Arabidopsis thaliana mutant lcd1-1 is associated with increased sensitivity to ozone and virulent Pseudomonas syringae. Plant J. 35: 206-218 (2003).

Barth C, De Tullio M, Conklin PL. The role of ascorbic acid in the control of flowering time and the onset of senescence. J. Exp. Bot. 57: 1657-1665 (2006).

Barth C, Jander G. Arabidopsis myrosinases TGG1 and TGG2 have redundant function in glucosinolate breakdown and insect defense. Plant J. 46: 549-562 (2006).

Barth C, Moeder W, Klessig DF, Conklin PL. The timing of senescence and response to pathogens is altered in the ascorbate-deficient Arabidopsis mutant vitamin c-1. Plant Physiol. 134: 1784-1792 (2004).

Barth I, Meyer S, Sauer N. PmSUC3: characterization of a SUT2/SUC3-type sucrose transporter from Plantago major. Plant Cell 15: 1375-1385 (2003).

Barth O, Vogt S, Uhlemann R, Zschiesche W, Humbeck K. Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29. Plant Mol. Biol. 69: 213-226 (2009).

Barthels N, van der Lee FM, Klap J, Goddijn OJ, Karimi M, Puzio P, Grundler FM, Ohl SA, Lindsey K, Robertson L, Robertson WM, Van Montagu M, Gheysen G, Sijmons PC. Regulatory sequences of Arabidopsis drive reporter gene expression in nematode feeding structures. Plant Cell 9: 2119-2134 (1997).

Bartlem D, Lambein I, Okamoto T, Itaya A, Uda Y, Kijima F, Tamaki Y, Nambara E, Naito S. Mutation in the threonine synthase gene results in an over-accumulation of soluble methionine in Arabidopsis. Plant Physiol. 123: 101-110 (2000).

Bartling D, Seedorf M, Mithofer A, Weiler EW. Cloning and expression of an Arabidopsis nitrilase which can convert indole-3-acetonitrile to the plant hormone, indole-3-acetic acid. Eur. J. Biochem. 205: 417-424 (1992).

Bartling D, Seedorf M, Schmidt RC, Weiler EW. Molecular characterization of two cloned nitrilases from Arabidopsis thaliana: key enzymes in biosynthesis of the plant hormone indole-3-acetic acid. Proc. Natl. Acad. Sci. U.S.A. 91: 6021-6025 (1994).

Bartling D, Weiler EW. Leucine aminopeptidase from Arabidopsis thaliana. Molecular evidence for a phylogenetically conserved enzyme of protein turnover in higher plants. Eur. J. Biochem. 205: 425-431 (1992).

Bartoli CG, Yu J, Gomez F, Fernandez L, McIntosh L, Foyer CH. Inter-relationships between light and respiration in the control of ascorbic acid synthesis and accumulation in Arabidopsis thaliana leaves. J. Exp. Bot. 57: 1621-1631 (2006).

Barton CJ, Tailford LE, Welchman H, Zhang Z, Gilbert HJ, Dupree P, Goubet F. Enzymatic fingerprinting of Arabidopsis pectic polysaccharides using polysaccharide analysis by carbohydrate gel electrophoresis (PACE). Planta 224: 163-174 (2006).

Bartsch M, Gobbato E, Bednarek P, Debey S, Schultze JL, Bautor J, Parker JE. Salicylic acid-independent ENHANCED DISEASE SUSCEPTIBILITY1 signaling in Arabidopsis immunity and cell death is regulated by the monooxygenase FMO1 and the Nudix hydrolase NUDT7. Plant Cell 18: 1038-1051 (2006).

Baskin TI, Beemster GT, Judy-March JE, Marga F. Disorganization of cortical microtubules stimulates tangential expansion and reduces the uniformity of cellulose microfibril alignment among cells in the root of Arabidopsis. Plant Physiol. 135: 2279-2290 (2004).

Baskin TI, Bivens NJ. Stimulation of radial expansion in Arabidopsis roots by inhibitors of actomyosin and vesicle secretion but not by various inhibitors of metabolism. Planta 197: 514-521 (1995).

Baskin TI, Remillong EL, Wilson JE. The impact of mannose and other carbon sources on the elongation and diameter of the primary root of Arabidopsis thaliana. Aust. J. Plant Physiol. 28: 481-488 (2001).

Baskin TI, Wilson JE. Inhibitors of protein kinases and phosphatases alter root morphology and disorganize cortical microtubules. Plant Physiol. 113: 493-502 (1997).

Basse CW, Kerschbamer C, Brustmann M, Altmann T, Kahmann R. Evidence for a Ustilago maydis steroid 5alpha-reductase by functional expression in Arabidopsis det2-1 mutants. Plant Physiol. 129: 717-732 (2002).

Bassel GW, Mullen RT, Bewley JD. ABI3 expression ceases following, but not during, germination of tomato and Arabidopsis seeds. J. Exp. Bot. 57: 1291-1297 (2006).

Bassel GW, Zielinska E, Mullen RT, Bewley JD. Down-regulation of della genes is not essential for germination of tomato, soybean, and Arabidopsis seeds. Plant Physiol. 136: 2782-2789 (2004).

Basset G, Raymond P, Malek L, Brouquisse R. Changes in the expression and the enzymic properties of the 20S proteasome in sugar-starved maize roots. Evidence for an in vivo oxidation of the proteasome. Plant Physiol. 128: 1149-1162 (2002).

Basset GJ, Quinlivan EP, Ravanel S, Rebeille F, Nichols BP, Shinozaki K, Seki M, Adams-Phillips LC, Giovannoni JJ, Gregory JF 3rd, Hanson AD. Folate synthesis in plants: the p-aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids. Proc. Natl. Acad. Sci. U.S.A. 101: 1496-1501 (2004).

Basset GJ, Ravanel S, Quinlivan EP, White R, Giovannoni JJ, Rebeille F, Nichols BP, Shinozaki K, Seki M, Gregory JF 3rd, Hanson AD. Folate synthesis in plants: the last step of the p-aminobenzoate branch is catalyzed by a plastidial aminodeoxychorismate lyase. Plant J. 40: 453-461 (2004).

Basset M, Conejero G, Lepetit M, Fourcroy P, Sentenac H. Organization and expression of the gene coding for the potassium transport system AKT1 of Arabidopsis thaliana. Plant Mol. Biol. 29: 947-958 (1995).

Bassham DC, Raikhel NV. An Arabidopsis VPS45p homolog implicated in protein transport to the vacuole. Plant Physiol. 117: 407-415 (1998).

Basu C, Halfhill MD, Mueller TC, Stewart CN Jr. Weed genomics: new tools to understand weed biology. Trends Plant Sci. 9: 391-398 (2004).

Basu D, Dehesh K, Schneider-Poetsch HJ, Harrington SE, McCouch SR, Quail PH. Rice PHYC gene: structure, expression, map position and evolution. Plant Mol. Biol. 44: 27-42 (2000).

Basu D, Le J, El-Essal Sel-D, Huang S, Zhang C, Mallery EL, Koliantz G, Staiger CJ, Szymanski DB. DISTORTED3/SCAR2 is a putative Arabidopsis wave complex subunit that activates the Arp2/3 complex and is required for epidermal morphogenesis. Plant Cell 17: 502-524 (2005).

Bate NJ, Rothstein SJ. C6-volatiles derived from the lipoxygenase pathway induce a subset of defense-related genes. Plant J. 16: 561-569 (1998).

Bate NJ, Sivasankar S, Moxon C, Riley JM, Thompson JE, Rothstein SJ. Molecular characterization of an Arabidopsis gene encoding hydroperoxide lyase, a cytochrome P-450 that is wound inducible. Plant Physiol. 117: 1393-1400 (1998).

Batistic O, Sorek N, Schultke S, Yalovsky S, Kudla J. Dual fatty acyl modification determines the localization and plasma membrane targeting of CBL/CIPK Ca2+ signaling complexes in Arabidopsis. Plant Cell 20: 1346-1362 (2008).

Battke F, Ernst D, Halbach S. Ascorbate promotes emission of mercury vapour from plants. Plant Cell Environ. 28: 1487-1495 (2005).

Baubec T, Scheid OM. Medea in full self-control. Trends Plant Sci. 11: 469-471 (2006).

Bauby H, Divol F, Truernit E, Grandjean O, Palauqui JC. Protophloem differentiation in early Arabidopsis thaliana development. Plant Cell Physiol. 48: 97-109 (2007).

Baucher M, El Jaziri M, Vandeputte O. From primary to secondary growth: origin and development of the vascular system. J. Exp. Bot. 58: 3485-3501 (2007).

Baud S, Graham IA. A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry. Plant J. 46: 155-169 (2006).

Baud S, Guyon V, Kronenberger J, Wuilleme S, Miquel M, Caboche M, Lepiniec L, Rochat C. Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis. Plant J. 33: 75-86 (2003).

Baud S, Mendoza MS, To A, Harscoet E, Lepiniec L, Dubreucq B. WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis. Plant J. 50: 825-838 (2007).

Baud S, Vaultier MN, Rochat C. Structure and expression profile of the sucrose synthase multigene family in Arabidopsis. J. Exp. Bot. 55: 397-409 (2004).

Baud S, Wuilleme S, Dubreucq B, de Almeida A, Vuagnat C, Lepiniec L, Miquel M, Rochat C. Function of plastidial pyruvate kinases in seeds of Arabidopsis thaliana. Plant J. 52: 405-419 (2007).

Baud S, Wuilleme S, Lemoine R, Kronenberger J, Caboche M, Lepiniec L, Rochat C. The AtSUC5 sucrose transporter specifically expressed in the endosperm is involved in early seed development in Arabidopsis. Plant J. 43: 824-836 (2005).

Baudouin E, Charpenteau M, Ranjeva R, Ranty B. A 45-kDa protein kinase related to mitogen-activated protein kinase is activated in tobacco cells treated with a phorbol ester. Planta 214: 400-405 (2002).

Baudry A, Caboche M, Lepiniec L. TT8 controls its own expression in a feedback regulation involving TTG1 and homologous MYB and bHLH factors, allowing a strong and cell-specific accumulation of flavonoids in Arabidopsis thaliana. Plant J. 46: 768-779 (2006).

Baudry A, Heim MA, Dubreucq B, Caboche M, Weisshaar B, Lepiniec L. TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. Plant J. 39: 366-380 (2004).

Bauer D, Viczian A, Kircher S, Nobis T, Nitschke R, Kunkel T, Panigrahi KC, Adam E, Fejes E, Schafer E, Nagy F. Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell 16: 1433-1445 (2004).

Bauer M, Dietrich C, Nowak K, Sierralta WD, Papenbrock J. Intracellular localization of Arabidopsis sulfurtransferases. Plant Physiol. 135: 916-926 (2004).

Bauer P, Thiel T, Klatte M, Bereczky Z, Brumbarova T, Hell R, Grosse I. Analysis of sequence, map position, and gene expression reveals conserved essential genes for iron uptake in Arabidopsis and tomato. Plant Physiol. 136: 4169-4183 (2004).

Baumberger N, Doesseger B, Guyot R, Diet A, Parsons RL, Clark MA, Simmons MP, Bedinger P, Goff SA, Ringli C, Keller B. Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Plant Physiol. 131: 1313-1326 (2003).

Baumberger N, Steiner M, Ryser U, Keller B, Ringli C. Synergistic interaction of the two paralogous Arabidopsis genes LRX1 and LRX2 in cell wall formation during root hair development. Plant J. 35: 71-81 (2003).

Baumbusch LO, Hughes DW, Galau GA, Jakobsen KS. LEC1, FUS3, ABI3 and Em expression reveals no correlation with dormancy in Arabidopsis. J. Exp. Bot. 55: 77-87 (2004).

Baumgardt RL, Oliverio KA, Casal JJ, Hoecker U. SPA1, a component of phytochrome A signal transduction, regulates the light signaling current. Planta 215: 745-753 (2002).

Baunsgaard L, Lutken H, Mikkelsen R, Glaring MA, Pham TT, Blennow A. A novel isoform of glucan, water dikinase phosphorylates pre-phosphorylated alpha-glucans and is involved in starch degradation in Arabidopsis. Plant J. 41: 595-605 (2005).

Baurle I, Laux T. Regulation of WUSCHEL transcription in the stem cell niche of the Arabidopsis shoot meristem. Plant Cell 17: 2271-2280 (2005).

Bauwe H, Kolukisaoglu U. Genetic manipulation of glycine decarboxylation. J. Exp. Bot. 54: 1523-1535 (2003).

Baxter CE, Costa MM, Coen ES. Diversification and co-option of RAD-like genes in the evolution of floral asymmetry. Plant J. 52: 105-113 (2007).

Baxter CJ, Liu JL, Fernie AR, Sweetlove LJ. Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68: 2313-2319 (2007).

Baxter CJ, Redestig H, Schauer N, Repsilber D, Patil KR, Nielsen J, Selbig J, Liu J, Fernie AR, Sweetlove LJ. The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiol. 143: 312-325 (2007).

Baxter I, Tchieu J, Sussman MR, Boutry M, Palmgren MG, Gribskov M, Harper JF, Axelsen KB. Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice. Plant Physiol. 132: 618-628 (2003).

Baxter IR, Vitek O, Lahner B, Muthukumar B, Borghi M, Morrissey J, Guerinot ML, Salt DE. The leaf ionome as a multivariable system to detect a plant's physiological status. Proc. Natl. Acad. Sci. U.S.A. 105: 12081-12086 (2008).

Baxter J, Moeder W, Urquhart W, Shahinas D, Chin K, Christendat D, Kang HG, Angelova M, Kato N, Yoshioka K. Identification of a functionally essential amino acid for Arabidopsis cyclic nucleotide gated ion channels using the chimeric AtCNGC11/12 gene. Plant J. 56: 457-469 (2008).

Baxter-Burrell A, Chang R, Springer P, Bailey-Serres J. Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis. Ann. Bot. (Lond.) 91: 129-141 (2003).

Beale SI. Green genes gleaned. Trends Plant Sci. 10: 309-312 (2005).

Beattie GA, Marcell LM. Effect of alterations in cuticular wax biosynthesis on the physicochemical properties and topography of maize leaf surfaces. Plant Cell Environ. 25: 1-16 (2002).

Beaudoin N, Serizet C, Gosti F, Giraudat J. Interactions between abscisic acid and ethylene signaling cascades. Plant Cell 12: 1103-1116 (2000).

Becher M, Talke IN, Krall L, Kramer U. Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant J. 37: 251-268 (2004).

Bechtold U, Karpinski S, Mullineaux PM. The influence of the light environment and photosynthesis on oxidative signalling responses in plant-biotrophic pathogen interactions. Plant Cell Environ. 28: 1046-1055 (2005).

Bechtold U, Murphy DJ, Mullineaux PM. Arabidopsis peptide methionine sulfoxide reductase2 prevents cellular oxidative damage in long nights. Plant Cell 16: 908-919 (2004).

Bechtold U, Rabbani N, Mullineaux PM, Thornalley PJ. Quantitative measurement of specific biomarkers for protein oxidation, nitration and glycation in Arabidopsis leaves. Plant J. 59: 661-671 (2009).

Bechtold U, Richard O, Zamboni A, Gapper C, Geisler M, Pogson B, Karpinski S, Mullineaux PM. Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis. J. Exp. Bot. 59: 121-133 (2008).

Beck A, Lendzian K, Oven M, Christmann A, Grill E. Phytochelatin synthase catalyzes key step in turnover of glutathione conjugates. Phytochemistry 62: 423-431 (2003).

Becker B, Holtgrefe S, Jung S, Wunrau C, Kandlbinder A, Baier M, Dietz KJ, Backhausen JE, Scheibe R. Influence of the photoperiod on redox regulation and stress responses in Arabidopsis thaliana L. (Heynh.) plants under long- and short-day conditions. Planta 224: 380-393 (2006).

Becker B, Holtgrefe S, Jung S, Wunrau C, Kandlbinder A, Baier M, Dietz KJ, Backhausen JE, Scheibe R. Influence of the photoperiod on redox regulation and stress responses in Arabidopsis thaliana L. (Heynh.) plants under long- and short-day conditions. Planta 224: 481 (2006).

Becker JD, Boavida LC, Carneiro J, Haury M, Feijo JA. Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. Plant Physiol. 133: 713-725 (2003).

Becker JD, Feijo JA. How many genes are needed to make a pollen tube? Lessons from transcriptomics. Ann. Bot. (Lond.) 100: 1117-1123 (2007).

Beckers GJ, Jaskiewicz M, Liu Y, Underwood WR, He SY, Zhang S, Conrath U. Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana. Plant Cell 21: 944-953 (2009).

Beckmann K, Dzuibany C, Biehler K, Fock H, Hell R, Migge A, Becker TW. Photosynthesis and fluorescence quenching, and the mRNA levels of plastidic GS or of mitochondrial SHMT in the leaves of the wild-type and of the SHMT-deficient stm mutant of Arabidopsis thaliana in relation to the rate of photorespiration. Planta 202: 379-386 (1997).

Beclin C, Berthome R, Palauqui JC, Tepfer M, Vaucheret H. Infection of tobacco or Arabidopsis plants by CMV counteracts systemic post-transcriptional silencing of nonviral (trans)genes. Virology 252: 313-317 (1998).

Becnel J, Natarajan M, Kipp A, Braam J. Developmental expression patterns of Arabidopsis XTH genes reported by transgenes and Genevestigator. Plant Mol. Biol. 61: 451-467 (2006).

Bedhomme M, Hoffmann M, McCarthy EA, Gambonnet B, Moran RG, Rebeille F, Ravanel S. Folate metabolism in plants: an Arabidopsis homolog of the mammalian mitochondrial folate transporter mediates folate import into chloroplasts. J. Biol. Chem. 280: 34823-34831 (2005).

Bednarek P, Schneider B, Svatos A, Oldham NJ, Hahlbrock K. Structural complexity, differential response to infection, and tissue specificity of indolic and phenylpropanoid secondary metabolism in Arabidopsis roots. Plant Physiol. 138: 1058-1070 (2005).

Bednarek P, Winter J, Hamberger B, Oldham NJ, Schneider B, Tan J, Hahlbrock K. Induction of 3'-O-beta-D-ribofuranosyl adenosine during compatible, but not during incompatible, interactions of Arabidopsis thaliana or Lycopersicon esculentum with Pseudomonas syringae pathovar tomato. Planta 218: 668-672 (2004).

Bednarek SY, Reynolds TL, Schroeder M, Grabowski R, Hengst L, Gallwitz D, Raikhel NV. A small GTP-binding protein from Arabidopsis thaliana functionally complements the yeast YPT6 null mutant. Plant Physiol. 104: 591-596 (1994).

Beebo A, Thomas D, Der C, Sanchez L, Leborgne-Castel N, Marty F, Schoefs B, Bouhidel K. Life with and without AtTIP1;1, an Arabidopsis aquaporin preferentially localized in the apposing tonoplasts of adjacent vacuoles. Plant Mol. Biol. 70: 193-209 (2009).

Beeckman T, Przemeck GK, Stamatiou G, Lau R, Terryn N, De Rycke R, Inze D, Berleth T. Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis. Plant Physiol. 130: 1883-1893 (2002).

Beekwilder J, van Leeuwen W, van Dam NM, Bertossi M, Grandi V, Mizzi L, Soloviev M, Szabados L, Molthoff JW, Schipper B, Verbocht H, de Vos RC, Morandini P, Aarts MG, Bovy A. The impact of the absence of aliphatic glucosinolates on insect herbivory in Arabidopsis. PLoS ONE 3: e2068 (2008).

Beemster GT, Baskin TI. Analysis of cell division and elongation underlying the developmental acceleration of root growth in Arabidopsis thaliana. Plant Physiol. 116: 1515-1526 (1998).

Beemster GT, De Veylder L, Vercruysse S, West G, Rombaut D, Van Hummelen P, Galichet A, Gruissem W, Inze D, Vuylsteke M. Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis. Plant Physiol. 138: 734-743 (2005).

Beemster GT, De Vusser K, De Tavernier E, De Bock K, Inze D. Variation in growth rate between Arabidopsis ecotypes is correlated with cell division and A-type cyclin-dependent kinase activity. Plant Physiol. 129: 854-864 (2002).

Beffagna N, Lutzu I. Inhibition of catalase activity as an early response of Arabidopsis thaliana cultured cells to the phytotoxin fusicoccin. J. Exp. Bot. 58: 4183-4194 (2007).

Behal RH, Oliver DJ. Biochemical and molecular characterization of fumarase from plants: purification and characterization of the enzyme--cloning, sequencing, and expression of the gene. Arch. Biochem. Biophys. 348: 65-74 (1997).

Behal RH, Oliver DJ. NAD(+)-dependent isocitrate dehydrogenase from Arabidopsis thaliana. Characterization of two closely related subunits. Plant Mol. Biol. 36: 691-698 (1998).

Bei Q, Luan S. Functional expression and characterization of a plant K+ channel gene in a plant cell model. Plant J. 13: 857-865 (1998).

Beisson F, Koo AJ, Ruuska S, Schwender J, Pollard M, Thelen JJ, Paddock T, Salas JJ, Savage L, Milcamps A, Mhaske VB, Cho Y, Ohlrogge JB. Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database. Plant Physiol. 132: 681-697 (2003).

Beisson F, Li Y, Bonaventure G, Pollard M, Ohlrogge JB. The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. Plant Cell 19: 351-368 (2007).

Bekman EP, Saibo NJ, Di Cataldo A, Regalado AP, Ricardo CP, Rodrigues-Pousada C. Differential expression of four genes encoding 1-aminocyclopropane-1-carboxylate synthase in Lupinus albus during germination, and in response to indole-3-acetic acid and wounding. Planta 211: 663-672 (2000).

Belbahri L, Chevalier L, Bensaddek L, Gillet F, Fliniaux MA, Boerjan W, Inze D, Thomas D, Thomasset B. Different expression of an S-adenosylmethionine synthetase gene in transgenic tobacco callus modifies alkaloid biosynthesis. Biotechnol. Bioeng. 69: 11-20 (2000).

Belenghi B, Acconcia F, Trovato M, Perazzolli M, Bocedi A, Polticelli F, Ascenzi P, Delledonne M. AtCYS1, a cystatin from Arabidopsis thaliana, suppresses hypersensitive cell death. Eur. J. Biochem. 270: 2593-2604 (2003).

Belenghi B, Romero-Puertas MC, Vercammen D, Brackenier A, Inze D, Delledonne M, Van Breusegem F. Metacaspase activity of Arabidopsis thaliana is regulated by S-nitrosylation of a critical cysteine residue. J. Biol. Chem. 282: 1352-1358 (2007).

Belenghi B, Salomon M, Levine A. Caspase-like activity in the seedlings of Pisum sativum eliminates weaker shoots during early vegetative development by induction of cell death. J. Exp. Bot. 55: 889-897 (2004).

Beligni MV, Mayfield SP. Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism. Plant Mol. Biol. 67: 389-401 (2008).

Beligni MV, Yamaguchi K, Mayfield SP. Chloroplast elongation factor ts pro-protein is an evolutionarily conserved fusion with the s1 domain-containing plastid-specific ribosomal protein-7. Plant Cell 16: 3357-3369 (2004).

Belin C, de Franco PO, Bourbousse C, Chaignepain S, Schmitter JM, Vavasseur A, Giraudat J, Barbier-Brygoo H, Thomine S. Identification of features regulating OST1 kinase activity and OST1 function in guard cells. Plant Physiol. 141: 1316-1327 (2006).

Belkhadir Y, Nimchuk Z, Hubert DA, Mackey D, Dangl JL. Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. Plant Cell 16: 2822-2835 (2004).

Belkhadir Y, Subramaniam R, Dangl JL. Plant disease resistance protein signaling: NBS-LRR proteins and their partners. Curr. Opin. Plant Biol. 7: 391-399 (2004).

Belkhadir Y, Wang X, Chory J. Brassinosteroid signaling pathway. Sci. STKE 364: cm4 (2006).

Bell-Lelong DA, Cusumano JC, Meyer K, Chapple C. Cinnamate-4-hydroxylase expression in Arabidopsis. Regulation in response to development and the environment. Plant Physiol. 113: 729-738 (1997).

Bellaoui M, Gruissem W. Altered expression of the Arabidopsis ortholog of DCL affects normal plant development. Planta 219: 819-826 (2004).

Bellec Y, Harrar Y, Butaeye C, Darnet S, Bellini C, Faure JD. Pasticcino2 is a protein tyrosine phosphatase-like involved in cell proliferation and differentiation in Arabidopsis. Plant J. 32: 713-722 (2002).

Belles-Boix E, Hamant O, Witiak SM, Morin H, Traas J, Pautot V. KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation. Plant Cell 18: 1900-1907 (2006).

Belmonte MF, Tahir M, Schroeder D, Stasolla C. Overexpression of HBK3, a class I KNOX homeobox gene, improves the development of Norway spruce (Picea abies) somatic embryos. J. Exp. Bot. 58: 2851-2861 (2007).

Bemer M, Wolters-Arts M, Grossniklaus U, Angenent GC. The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules. Plant Cell 20: 2088-2101 (2008).

Ben Zvi MM, Negre-Zakharov F, Masci T, Ovadis M, Shklarman E, Ben-Meir H, Tzfira T, Dudareva N, Vainstein A. Interlinking showy traits: co-engineering of scent and colour biosynthesis in flowers. Plant Biotechnol. J. 6: 403-415 (2008).

Ben-Naim O, Eshed R, Parnis A, Teper-Bamnolker P, Shalit A, Coupland G, Samach A, Lifschitz E. The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA. Plant J. 46: 462-476 (2006).

Ben-Nissan G, Cui W, Kim DJ, Yang Y, Yoo BC, Lee JY. Arabidopsis casein kinase 1-like 6 (CKL6) contains microtubule-binding domain and affects organization of cortical microtubules. Plant Physiol. 148: 1897-1907 (2008).

Ben-Tzvi Tzchori I, Perl A, Galili G. Lysine and threonine metabolism are subject to complex patterns of regulation in Arabidopsis. Plant Mol. Biol. 32: 727-734 (1996).

Bender J, Fink GR. A Myb homologue, ATR1, activates tryptophan gene expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 95: 5655-5660 (1998).

Benderoth M, Textor S, Windsor AJ, Mitchell-Olds T, Gershenzon J, Kroymann J. Positive selection driving diversification in plant secondary metabolism. Proc. Natl. Acad. Sci. U.S.A. 103: 9118-9123 (2006).

Benedetti CE, Arruda P. Altering the expression of the chlorophyllase gene ATHCOR1 in transgenic Arabidopsis caused changes in the chlorophyll-to-chlorophyllide ratio. Plant Physiol. 128: 1255-1263 (2002).

Benedetti CE, Xie D, Turner JG. Coi1-dependent expression of an Arabidopsis vegetative storage protein in flowers and siliques and in response to coronatine or methyl jasmonate. Plant Physiol. 109: 567-572 (1995).

Benedict C, Geisler M, Trygg J, Huner N, Hurry V. Consensus by democracy. Using meta-analyses of microarray and genomic data to model the cold acclimation signaling pathway in Arabidopsis. Plant Physiol. 141: 1219-1232 (2006).

Benedito VA, Torres-Jerez I, Murray JD, Andriankaja A, Allen S, Kakar K, Wandrey M, Verdier J, Zuber H, Ott T, Moreau S, Niebel A, Frickey T, Weiller G, He J, Dai X, Zhao PX, Tang Y, Udvardi MK. A gene expression atlas of the model legume Medicago truncatula. Plant J. 55: 504-513 (2008).

Benedito VA, Visser PB, van Tuyl JM, Angenent GC, de Vries SC, Krens FA. Ectopic expression of LLAG1, an AGAMOUS homologue from lily (Lilium longiflorum Thunb.) causes floral homeotic modifications in Arabidopsis. J. Exp. Bot. 55: 1391-1399 (2004).

Benghezal M, Wasteneys GO, Jones DA. The C-terminal dilysine motif confers endoplasmic reticulum localization to type I membrane proteins in plants. Plant Cell 12: 1179-1202 (2000).

Benhamed M, Bertrand C, Servet C, Zhou DX. Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell 18: 2893-2903 (2006).

Benhamed M, Martin-Magniette ML, Taconnat L, Bitton F, Servet C, De Clercq R, De Meyer B, Buysschaert C, Rombauts S, Villarroel R, Aubourg S, Beynon J, Bhalerao RP, Coupland G, Gruissem W, Menke FL, Weisshaar B, Renou JP, Zhou DX, Hilson P. Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant J. 56: 493-504 (2008).

Benjamins R, Ampudia CS, Hooykaas PJ, Offringa R. PINOID-mediated signaling involves calcium-binding proteins. Plant Physiol. 132: 1623-1630 (2003).

Benlloch R, d'Erfurth I, Ferrandiz C, Cosson V, Beltran JP, Canas LA, Kondorosi A, Madueno F, Ratet P. Isolation of mtpim proves Tnt1 a useful reverse genetics tool in Medicago truncatula and uncovers new aspects of AP1-like functions in legumes. Plant Physiol. 142: 972-983 (2006).

Bennett MD, Leitch IJ, Price HJ, Johnston JS. Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate Ann. Bot. (Lond.) 91: 547-557 (2003).

Bennett RN, Wenke T, Freudenberg B, Mellon FA, Ludwig-Muller J. The tu8 mutation of Arabidopsis thaliana encoding a heterochromatin protein 1 homolog causes defects in the induction of secondary metabolite biosynthesis. Plant Biol. (Stuttg.) 7: 348-357 (2005).

Bennett T, Sieberer T, Willett B, Booker J, Luschnig C, Leyser O. The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport. Curr. Biol. 16: 553-563 (2006).

Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W. Consistent over-estimation of gene number in complex plant genomes. Curr. Opin. Plant Biol. 7: 732-736 (2004).

Bennetzen JL, Ma J. The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis. Curr. Opin. Plant Biol. 6: 128-133 (2003).

Benschop JJ, Jackson MB, Guhl K, Vreeburg RAM, Croker SJ, Peeters AJM, Voesenek LACJ. Contrasting interactions between ethylene and abscisic acid in Rumex species differing in submergence tolerance. Plant J. 44: 756-768 (2005).

Bensmihen S, Giraudat J, Parcy F. Characterization of three homologous basic leucine zipper transcription factors (bZIP) of the ABI5 family during Arabidopsis thaliana embryo maturation. J. Exp. Bot. 56: 597-603 (2005).

Bensmihen S, Rippa S, Lambert G, Jublot D, Pautot V, Granier F, Giraudat J, Parcy F. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell 14: 1391-1403 (2002).

Bensmihen S, To A, Lambert G, Kroj T, Giraudat J, Parcy F. Analysis of an activated ABI5 allele using a new selection method for transgenic Arabidopsis seeds. FEBS Lett. 561: 127-131 (2004).

Bent AF. Arabidopsis in planta transformation. Uses, mechanisms, and prospects for transformation of other species. Plant Physiol. 124: 1540-1547 (2000).

Bentolila S, Chateigner-Boutin AL, Hanson MR. Ecotype allelic variation in C-to-U editing extent of a mitochondrial transcript identifies RNA-editing quantitative trait loci in Arabidopsis. Plant Physiol. 139: 2006-2016 (2005).

Bentsink L, Alonso-Blanco C, Vreugdenhil D, Tesnier K, Groot SP, Koornneef M. Genetic analysis of seed-soluble oligosaccharides in relation to seed storability of Arabidopsis. Plant Physiol. 124: 1595-1604 (2000).

Bentsink L, Jowett J, Hanhart CJ, Koornneef M. Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 17042-17047 (2006).

Benveniste P. Biosynthesis and accumulation of sterols. Annu. Rev. Plant Biol. 55: 429-457 (2004).

Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, Moseyko N, Yoo D, Xu I, Zoeckler B, Montoya M, Miller N, Weems D, Rhee SY. Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135: 745-755 (2004).

Berberich T, Harada M, Sugawara K, Kodama H, Iba K, Kusano T. Two maize genes encoding omega-3 fatty acid desaturase and their differential expression to temperature. Plant Mol. Biol. 36: 297-306 (1998).

Berdy SE, Kudla J, Gruissem W, Gillaspy GE. Molecular characterization of At5PTase1, an inositol phosphatase capable of terminating inositol trisphosphate signaling. Plant Physiol. 126: 801-810 (2001).

Berezin I, Mizrachy-Dagry T, Brook E, Mizrahi K, Elazar M, Zhuo S, Saul-Tcherkas V, Shaul O. Overexpression of AtMHX in tobacco causes increased sensitivity to Mg2+, Zn2+, and Cd2+ ions, induction of V-ATPase expression, and a reduction in plant size. Plant Cell Rep. 27: 939-949 (2008).

Berg M, Parbel A, Pettersen H, Fenyo D, Bjorkesten L. Reproducibility of LC-MS-based protein identification. J. Exp. Bot. 57: 1509-1514 (2006).

Berg M, Rogers R, Muralla R, Meinke D. Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Plant J. 44: 866-878 (2005).

Bergantino E, Sandona D, Cugini D, Bassi R. The photosystem II subunit CP29 can be phosphorylated in both C3 and C4 plants as suggested by sequence analysis. Plant Mol. Biol. 36: 11-22 (1998).

Bergelson J, Purrington CB, Palm CJ, Lopez-Gutierrez JC. Costs of resistance: a test using transgenic Arabidopsis thaliana. Proc. Roy. Soc. Lond. B. Biol. Sci. 263: 1659-1663 (1996).

Berger B, Stracke R, Yatusevich R, Weisshaar B, Flugge UI, Gigolashvili T. A simplified method for the analysis of transcription factor-promoter interactions that allows high-throughput data generation. Plant J. 50: 911-916 (2007).

Berger F. Endosperm: the crossroad of seed development. Curr. Opin. Plant Biol. 6: 42-50 (2003).

Berger S. Jasmonate-related mutants of Arabidopsis as tools for studying stress signaling. Planta 214: 497-504 (2002).

Berger S, Benediktyova Z, Matous K, Bonfig K, Mueller MJ, Nedbal L, Roitsch T. Visualization of dynamics of plant-pathogen interaction by novel combination of chlorophyll fluorescence imaging and statistical analysis: differential effects of virulent and avirulent strains of P. syringae and of oxylipins on A. thaliana. J. Exp. Bot. 58: 797-806 (2007).

Bergmann DC, Lukowitz W, Somerville CR. Stomatal development and pattern controlled by a MAPKK kinase. Science 304: 1494-1497 (2004).

Bergmann DC, Sack FD. Stomatal development. Annu. Rev. Plant Biol. 58: 163-181 (2007).

Bergmuller E, Porfirova S, Dormann P. Characterization of an Arabidopsis mutant deficient in gamma-tocopherol methyltransferase. Plant Mol. Biol. 52: 1181-1190 (2003).

Berkowitz O, Jost R, Pollmann S, Masle J. Characterization of TCTP, the translationally controlled tumor protein, from Arabidopsis thaliana. Plant Cell 20: 3430-3447 (2008).

Berlyn MB, Last RL, Fink GR. A gene encoding the tryptophan synthase beta subunit of Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 86: 4604-4608 (1989).

Bernal AJ, Jensen JK, Harholt J, Sørensen S, Moller I, Blaukopf C, Johansen B, de Lotto R, Pauly M, Scheller HV, Willats WG. Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis. Plant J. 52: 791-802 (2007).

Bernal AJ, Yoo CM, Mutwil M, Jensen JK, Hou G, Blaukopf C, Sorensen I, Blancaflor EB, Scheller HV, Willats WG. Functional analysis of the cellulose synthase like genes CSLD1, CSLD2 and CSLD4 in tip growing Arabidopsis cells. Plant Physiol. 148: 1238-1253 (2008).

Bernard C, Roosens N, Czernic P, Lebrun M, Verbruggen N. A novel CPx-ATPase from the cadmium hyperaccumulator Thlaspi caerulescens. FEBS Lett. 569: 140-148 (2004).

Bernasconi P, Walters EW, Woodworth AR, Siehl DL, Stone TE, Subramanian MV. Functional expression of Arabidopsis thaliana anthranilate synthase subunit I in Escherichia coli. Plant Physiol. 106: 353-358 (1994).

Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H. CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana. Plant J. 47: 591-603 (2006).

Bernhardt C, Tierney ML. Expression of AtPRP3, a proline-rich structural cell wall protein from Arabidopsis, is regulated by cell-type-specific developmental pathways involved in root hair formation. Plant Physiol. 122: 705-714 (2000).

Bernier-Villamor L, Navarro E, Sevilla F, Lazaro JJ. Cloning and characterization of a 2-Cys peroxiredoxin from Pisum sativum. J. Exp. Bot. 55: 2191-2199 (2004).

Bernoux M, Timmers T, Jauneau A, Brie C, de Wit PJ, Marco Y, Deslandes L. RD19, an Arabidopsis cysteine protease required for RRS1-R-mediated resistance, is relocalized to the nucleus by the Ralstonia solanacearum PopP2 effector. Plant Cell 20: 2252-2264 (2008).

Berr A, Pecinka A, Meister A, Kreth G, Fuchs J, Blattner FR, Lysak MA, Schubert I. Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata. Plant J. 48: 771-783 (2006).

Berrocal-Lobo M, Molina A, Solano R. Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. Plant J. 29: 23-32 (2002).

Bertin C, Weston LA, Huang T, Jander G, Owens T, Meinwald J, Schroeder FC. Grass roots chemistry: meta-tyrosine, an herbicidal nonprotein amino acid. Proc. Natl. Acad. Sci. U.S.A. 104: 16964-16969 (2007).

Bertl A, Anderson JA, Slayman CL, Sentenac H, Gaber RF. Inward and outward rectifying potassium currents in Saccharomyces cerevisiae mediated by endogenous and heterelogously expressed ion channels. Folia Microbiol. (Praha) 39: 507-509 (1994).

Besson-Bard A, Gravot A, Richaud P, Auroy P, Duc C, Gaymard F, Taconnat L, Renou JP, Pugin A, Wendehenne D. Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiol. 149: 1302-1315 (2009).

Bethke PC, Gubler F, Jacobsen JV, Jones RL. Dormancy of Arabidopsis seeds and barley grains can be broken by nitric oxide. Planta 219: 847-855 (2004).

Bethke PC, Libourel IG, Aoyama N, Chung YY, Still DW, Jones RL.. The Arabidopsis aleurone layer responds to nitric oxide, gibberellin, and abscisic acid and is sufficient and necessary for seed dormancy Plant Physiol. 143: 1173-1188 (2007).

Bethke PC, Libourel IG, Jones RL. Nitric oxide reduces seed dormancy in Arabidopsis. J. Exp. Bot. 57: 517-526 (2006).

Bethke PC, Libourel IG, Reinohl V, Jones RL. Sodium nitroprusside, cyanide, nitrite, and nitrate break Arabidopsis seed dormancy in a nitric oxide-dependent manner. Planta 223: 805-812 (2006).

Beuve N, Rispail N, Laine P, Cliquet JB, Ourry A, Le Deunff E. Putative role of gamma-aminobutyric acid (GABA) as a longdistance signal in up-regulation of nitrate uptake in Brassica napus L.. Plant Cell Environ. 27: 1035-1046 (2004).

Bevan M, Bancroft I, Mewes HW, Martienssen R, McCombie R. Clearing a path through the jungle: progress in Arabidopsis genomics. Bioessays 21: 110-120 (1999).

Bevan M, Mayer K, White O, Eisen JA, Preuss D, Bureau T, Salzberg SL, Mewes H. Sequence and analysis of the Arabidopsis genome. Curr. Opin. Plant Biol. 4: 105-110 (2001).

Bevan M, Walsh S. Positioning Arabidopsis in plant biology. A key step toward unification of plant research. Plant Physiol. 135: 602-606 (2004).

Beveridge CA. Axillary bud outgrowth: sending a message. Curr. Opin. Plant Biol. 9: 35-40 (2006).

Beyhl D, Hortensteiner S, Martinoia E, Farmer EE, Fromm J, Marten I, Hedrich R. The fou2 mutation in the major vacuolar cation channel TPC1 confers tolerance to inhibitory luminal calcium. Plant J. 58: 715-723 (2009).

Bezerra IC, Michaels SD, Schomburg FM, Amasino RM. Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis. Plant J. 40: 112-119 (2004).

Bezhani S, Winter C, Hershman S, Wagner JD, Kennedy JF, Kwon CS, Pfluger J, Su Y, Wagner D. Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED. Plant Cell 19: 403-416 (2007).

Bhalla R, Narasimhan K, Swarup S. Metabolomics and its role in understanding cellular responses in plants. Plant Cell Rep. 24: 562-571 (2005).

Bhandari S, Fujino T, Thammanagowda S, Zhang D, Xu F, Joshi CP. Xylem-specific and tension stress-responsive coexpression of KORRIGAN endoglucanase and three secondary wall-associated cellulose synthase genes in aspen trees. Planta 224: 828-837 (2006).

Bharti AK, Khurana JP. Mutants of Arabidopsis as tools to understand the regulation of phenylpropanoid pathway and UVB protection mechanisms. Photochem. Photobiol. 65: 765-776 (1997).

Bharti K, Von Koskull-Doring P, Bharti S, Kumar P, Tintschl-Korbitzer A, Treuter E, Nover L. Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1. Plant Cell 16: 1521-1535 (2004).

Bhatt AM, Lister C, Crawford N, Dean C. The transposition frequency of Tag1 elements is increased in transgenic Arabidopsis lines. Plant Cell 10: 427-434 (1998).

Bhattacharjee S, Lee LY, Oltmanns H, Cao H, Veena, Cuperus J, Gelvin SB. IMPa-4, an Arabidopsis importin alpha isoform, is preferentially involved in Agrobacterium-mediated plant transformation. Plant Cell 20: 2661-2680 (2008).

Bhattarai KK, Li Q, Liu Y, Dinesh-Kumar SP, Kaloshian I. The MI-1-mediated pest resistance requires Hsp90 and Sgt1. Plant Physiol. 144: 312-323 (2007).

Bhave NS, Veley KM, Nadeau JA, Lucas JR, Bhave SL, Sack FD. TOO MANY MOUTHS promotes cell fate progression in stomatal development of Arabidopsis stems. Planta 229: 357-367 (2009).

Bi YM, Wang RL, Zhu T, Rothstein SJ. Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis. BMC Genomics 8: 281 (2007).

Bi YM, Zhang Y, Signorelli T, Zhao R, Zhu T, Rothstein S. Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity. Plant J. 44: 680-692 (2005).

Bianchi MW, Damerval C, Vartanian N. Identification of proteins regulated by cross-talk between drought and hormone pathways in Arabidopsis wild-type and auxin-insensitive mutants, axr1 and axf2. Funct. Plant Biol. 29: 55-61 (2002).

Biasi R, Falasca G, Speranza A, De Stradis A, Scoccianti V, Franceschetti M, Bagni N, Altamura MM. Biochemical and ultrastructural features related to male sterility in the dioecious species Actinidia deliciosa. Plant Physiol. Biochem. 39: 395-406 (2001).

Bibikova TN, Zhigilei A, Gilroy S. Root hair growth in Arabidopsis thaliana is directed by calcium and an endogenous polarity. Planta 203: 495-505 (1997).

Bick JA, Aslund F, Chen Y, Leustek T. Glutaredoxin function for the carboxyl-terminal domain of the plant-type 5'-adenylylsulfate reductase. Proc. Natl. Acad. Sci. U.S.A. 95: 8404-8409 (1998).

Bick JA, Setterdahl AT, Knaff DB, Chen Y, Pitcher LH, Zilinskas BA, Leustek T. Regulation of the plant-type 5'-adenylyl sulfate reductase by oxidative stress. Biochemistry 40: 9040-9048 (2001).

Bidwell SD, Crawford SA, Woodrow IE, Sommer-Knudsen J, Marshall AT. Sub-cellular localization of Ni in the hyperaccumulator, Hybanthus floribundus (Lindley) F. Muell. Plant Cell Environ. 27: 705-716 (2004).

Biela A, Grote K, Otto B, Hoth S, Hedrich R, Kaldenhoff R. The Nicotiana tabacum plasma membrane aquaporin NtAQP1 is mercury-insensitive and permeable for glycerol. Plant J. 18: 565-570 (1999).

Biemelt S, Tschiersch H, Sonnewald U. Impact of altered gibberellin metabolism on biomass accumulation, lignin biosynthesis, and photosynthesis in transgenic tobacco plants. Plant Physiol. 135: 254-265 (2004).

Bienert GP, Moller AL, Kristiansen KA, Schulz A, Moller IM, Schjoerring JK, Jahn TP. Specific aquaporins facilitate the diffusion of hydrogen peroxide across membranes. J. Biol. Chem. 282: 1183-1192 (2007).

Bieniawska Z, Paul Barratt DH, Garlick AP, Thole V, Kruger NJ, Martin C, Zrenner R, Smith AM. Analysis of the sucrose synthase gene family in Arabidopsis. Plant J. 49: 810-828 (2007).

Bies-Etheve N, da Silva Conceicao A, Giraudat J, Koornneef M, Leon-Kloosterziel K, Valon C, Delseny M. Importance of the B2 domain of the Arabidopsis ABI3 protein for Em and 2S albumin gene regulation. Plant Mol. Biol. 40: 1045-1054 (1999).

Bies-Etheve N, Gaubier-Comella P, Debures A, Lasserre E, Jobet E, Raynal M, Cooke R, Delseny M. Inventory, evolution and expression profiling diversity of the LEA (late embryogenesis abundant) protein gene family in Arabidopsis thaliana. Plant Mol. Biol. 67: 107-124 (2008).

Biesgen C, Weiler EW. Structure and regulation of OPR1 and OPR2, two closely related genes encoding 12-oxophytodienoic acid-10,11-reductases from Arabidopsis thaliana. Planta 208: 155-165 (1999).

Bieza K, Lois R. An Arabidopsis mutant tolerant to lethal ultraviolet-B levels shows constitutively elevated accumulation of flavonoids and other phenolics. Plant Physiol. 126: 1105-1115 (2001).

Bihler H, Eing C, Hebeisen S, Roller A, Czempinski K, Bertl A. TPK1 is a vacuolar ion channel different from the slow-vacuolar cation channel. Plant Physiol. 139: 417-424 (2005).

Bilodeau P, Udvardi MK, Peacock WJ, Dennis ES. A prolonged cold treatment-induced cytochrome P450 gene from Arabidopsis thaliana. Plant Cell Environ. 22: 791-800 (1999).

Bilyeu KD, Cole JL, Laskey JG, Riekhof WR, Esparza TJ, Kramer MD, Morris RO. Molecular and biochemical characterization of a cytokinin oOxidase from maize. Plant Physiol. 125: 378-386 (2001).

Binarova P, Cenklova V, Prochazkova J, Doskocilova A, Volc J, Vrlik M, Bogre L. Gamma-tubulin is essential for acentrosomal microtubule nucleation and coordination of late mitotic events in Arabidopsis. Plant Cell 18: 1199-1212 (2006).

Binder BM, Mortimore LA, Stepanova AN, Ecker JR, Bleecker AB. Short-term growth responses to ethylene in Arabidopsis seedlings are EIN3/EIL1 independent. Plant Physiol. 136: 2921-2927 (2004).

Binder BM, O'malley RC, Wang W, Moore JM, Parks BM, Spalding EP, Bleecker AB. Arabidopsis seedling growth response and recovery to ethylene. A kinetic analysis. Plant Physiol. 136: 2913-2920 (2004).

Binder BM, O'malley RC, Wang W, Zutz TC, Bleecker AB. Ethylene stimulates nutations that are dependent on the ETR1 receptor. Plant Physiol. 142: 1690-1700 (2006).

Binder BM, Walker JM, Gagne JM, Emborg TJ, Hemmann G, Bleecker AB, Vierstra RD. The Arabidopsis EIN3 binding F-Box proteins EBF1 and EBF2 have distinct but overlapping roles in ethylene signaling. Plant Cell 19: 509-523 (2007).

Bindschedler LV, Dewdney J, Blee KA, Stone JM, Asai T, Plotnikov J, Denoux C, Hayes T, Gerrish C, Davies DR, Ausubel FM, Paul Bolwell G. Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance. Plant J. 47: 851-863 (2006).

Bindschedler LV, Palmblad M, Cramer R. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry 69: 1962-1972 (2008).

Bird D, Beisson F, Brigham A, Shin J, Greer S, Jetter R, Kunst L, Wu X, Yephremov A, Samuels L. Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion. Plant J. 52: 485-498 (2007).

Birnbaum K, Benfey PN. Network building: transcriptional circuits in the root. Curr. Opin. Plant Biol. 7: 582-588 (2004).

Birschwilks M, Sauer N, Scheel D, Neumann S. Arabidopsis thaliana is a susceptible host plant for the holoparasite Cuscuta spec. Planta 226: 1231-1241 (2007).

Bisanz C, Begot L, Carol P, Perez P, Bligny M, Pesey H, Gallois JL, Lerbs-Mache S, Mache R. The Arabidopsis nuclear DAL gene encodes a chloroplast protein which is required for the maturation of the plastid ribosomal RNAs and is essential for chloroplast differentiation. Plant Mol. Biol. 51: 651-663 (2003).

Bischoff F, Vahlkamp L, Molendijk A, Palme K. Localization of AtROP4 and AtROP6 and interaction with the guanine nucleotide dissociation inhibitor AtRhoGDI1 from Arabidopsis. Plant Mol. Biol. 42: 515-530 (2000).

Bischoff V, Cookson SJ, Wu S, Scheible WR. Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings. J. Exp. Bot. 60: 955-965 (2009).

Biskup B, Scharr H, Fischbach A, Wiese-Klinkenberg A, Schurr U, Walter A. Diel growth cycle of isolated leaf discs analyzed with a novel, high-throughput three-dimensional imaging method is identical to that of intact leaves. Plant Physiol. 149: 1452-1461 (2009).

Bittner-Eddy PD, Allen RL, Rehmany AP, Birch P, Beynon JL. Use of suppression subtractive hybridization to identify downy mildew genes expressed during infection of Arabidopsis thaliana. Mol. Plant Pathol. 4: 501-507 (2003).

Blacklock BJ, Jaworski JG. Studies into factors contributing to substrate specificity of membrane-bound 3-ketoacyl-CoA synthases. Eur. J. Biochem. 269: 4789-4798 (2002).

Blackman LM, Overall RL. Structure and function of plasmodesmata. Aust. J. Plant Physiol. 28: 709-727 (2001).

Blakeslee JJ, Peer WA, Murphy AS. Auxin transport. Curr. Opin. Plant Biol. 8: 494-500 (2005).

Blanc G, Barakat A, Guyot R, Cooke R, Delseny M. Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1102 (2000).

Blanc G, Wolfe KH. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16: 1679-1691 (2004).

Blanc G, Wolfe KH. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678 (2004).

Blancaflor EB, Hou G, Chapman KD. Elevated levels of N-lauroylethanolamine, an endogenous constituent of desiccated seeds, disrupt normal root development in Arabidopsis thaliana seedlings. Planta 217: 206-217 (2003).

Blanco F, Garreton V, Frey N, Dominguez C, Perez-Acle T, Van der Straeten D, Jordana X, Holuigue L. Identification of NPR1-dependent and independent genes early induced by salicylic acid treatment in Arabidopsis. Plant Mol. Biol. 59: 927-944 (2005).

Blanco F, Salinas P, Cecchini NM, Jordana X, Van Hummelen P, Alvarez ME, Holuigue L. Early genomic responses to salicylic acid in Arabidopsis. Plant Mol. Biol. 70: 79-102 (2009).

Blanvillain R, Kim JH, Wu S, Lima A, Ow DW. OXIDATIVE STRESS 3 is a chromatin-associated factor involved in tolerance to heavy metals and oxidative stress. Plant J. 57: 654-665 (2009).

Blasing OE, Gibon Y, Gunther M, Hohne M, Morcuende R, Osuna D, Thimm O, Usadel B, Scheible WR, Stitt M. Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17: 3257-3281 (2005).

Blatt MR, Maurousset L, Meharg AA. High-affinity NO(3-)-H+ cotransport in the fungus Neurospora: induction and control by pH and membrane voltage. J. Membr. Biol. 160: 59-76 (1997).

Blaudez D, Kohler A, Martin F, Sanders D, Chalot M. Poplar metal tolerance protein 1 confers zinc tolerance and is an oligomeric vacuolar zinc transporter with an essential leucine zipper motif. Plant Cell 15: 2911-2928 (2003).

Blazquez MA, Ahn JH, Weigel D. A thermosensory pathway controlling flowering time in Arabidopsis thaliana. Nat. Genet. 33: 168-171 (2003).

Blazquez MA, Green R, Nilsson O, Sussman MR, Weigel D. Gibberellins promote flowering of Arabidopsis by activating the LEAFY promoter. Plant Cell 10: 791-800 (1998).

Blazquez MA, Trenor M, Weigel D. Independent control of gibberellin biosynthesis and flowering time by the circadian clock in Arabidopsis. Plant Physiol. 130: 1770-1775 (2002).

Blazquez MA, Weigel D. Independent regulation of flowering by phytochrome B and gibberellins in Arabidopsis. Plant Physiol. 120: 1025-1032 (1999).

Bleecker AB. Genetic analysis of ethylene responses in Arabidopsis thaliana. Symp. Soc. Exp. Biol. 45: 149-158 (1991).

Bleecker AB. Ethylene perception and signaling: an evolutionary perspective. Trends Plant Sci. 4: 269-274 (1999).

Bleecker AB, Esch JJ, Hall AE, Rodriguez FI, Binder BM. The ethylene-receptor family from Arabidopsis: structure and function. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 353: 1405-1412 (1998).

Bleecker AB, Kende H. Ethylene: A gaseous signal molecule in plants. Annu. Rev. Cell Dev. Biol. 16: 1-18 (2000).

Bleeker PM, Hakvoort HW, Bliek M, Souer E, Schat H. Enhanced arsenate reduction by a CDC25-like tyrosine phosphatase explains increased phytochelatin accumulation in arsenate-tolerant Holcus lanatus. Plant J. 45: 917-929 (2006).

Bleuyard JY, Gallego ME, Savigny F, White CI. Differing requirements for the Arabidopsis Rad51 paralogs in meiosis and DNA repair. Plant J. 41: 533-545 (2005).

Blevins DG, Lukaszewski KM. Boron in plant structure and function. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 481-500 (1998).

Bleys A, Van Houdt H, Depicker A. Down-regulation of endogenes mediated by a transitive silencing signal. RNA 12: 1633-1639 (2006).

Block MA, Tewari AK, Albrieux C, Marechal E, Joyard J. The plant S-adenosyl-L-methionine:Mg-protoporphyrin IX methyltransferase is located in both envelope and thylakoid chloroplast membranes. Eur. J. Biochem. 269: 240-248 (2002).

Blodner C, Goebel C, Feussner I, Gatz C, Polle A. Warm and cold parental reproductive environments affect seed properties, fitness, and cold responsiveness in Arabidopsis thaliana progenies. Plant Cell Environ. 30: 165-175 (2007).

Bloss T, Clemens S, Nies DH. Characterization of the ZAT1p zinc transporter from Arabidopsis thaliana in microbial model organisms and reconstituted proteoliposomes. Planta 214: 783-791 (2002).

Blount JW, Masoud S, Sumner LW, Huhman D, Dixon RA. Over-expression of cinnamate 4-hydroxylase leads to increased accumulation of acetosyringone in elicited tobacco cell-suspension cultures. Planta 214: 902-910 (2002).

Blum DE, Neff MM, Van Volkenburgh E. Light-stimulated cotyledon expansion in the blu3 and hy4 mutants of Arabidopsis thaliana. Plant Physiol. 105: 1433-1436 (1994).

Blum R, Beck A, Korte A, Stengel A, Letzel T, Lendzian K, Grill E. Function of phytochelatin synthase in catabolism of glutathione-conjugates. Plant J. 49: 740-749 (2007).

Blumwald E. Engineering salt tolerance in plants. Biotechnol. Genet. Eng. Rev. 20: 261-275 (2003).

Boccalandro HE, Mazza CA, Mazzella MA, Casal JJ, Ballare CL. Ultraviolet B radiation enhances a phytochrome-B-mediated photomorphogenic response in Arabidopsis. Plant Physiol. 126: 780-788 (2001).

Boccalandro HE, Ploschuk EL, Yanovsky MJ, Sanchez RA, Gatz C, Casal JJ. Increased phytochrome B alleviates density effects on tuber yield of field potato crops. Plant Physiol. 133: 1539-1546 (2003).

Boccalandro HE, Rugnone ML, Moreno JE, Ploschuk EL, Serna L, Yanovsky MJ, Casal JJ. Phytochrome B enhances photosynthesis at the expense of water-use efficiency in Arabidopsis. Plant Physiol. 150: 1083-1092 (2009).

Boccara M, Mills CE, Zeier J, Anzi C, Lamb C, Poole RK, Delledonne M. Flavohaemoglobin HmpX from Erwinia chrysanthemi confers nitrosative stress tolerance and affects the plant hypersensitive reaction by intercepting nitric oxide produced by the host. Plant J. 43: 226-237 (2005).

Boch J, Joardar V, Gao L, Robertson TL, Lim M, Kunkel BN. Identification of Pseudomonas syringae pv. tomato genes induced during infection of Arabidopsis thaliana. Mol. Microbiol. 44: 73-88 (2002).

Bock KW, Honys D, Ward JM, Padmanaban S, Nawrocki EP, Hirschi KD, Twell D, Sze H. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol. 140: 1151-1168 (2006).

Bockenhoff A, Prior DA, Grundler FM, Oparka KJ. Induction of phloem unloading in Arabidopsis thaliana roots by the parasitic nematode Heterodera schachtii. Plant Physiol. 112: 1421-1427 (1996).

Boddi B, Loudeche R, Franck F. Delayed chlorophyll accumulation and pigment photodestruction in the epicotyls of dark-grown pea (Pisum sativum). Physiol. Plant. 125: 365-372 (2005).

Boerjan W, Cervera MT, Delarue M, Beeckman T, Dewitte W, Bellini C, Caboche M, Van Onckelen H, Van Montagu M, Inze D. Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction. Plant Cell 7: 1405-1419 (1995).

Boerjan W, Vuylsteke M. Integrative genetical genomics in Arabidopsis. Nat. Genet. 41: 144-145 (2009).

Bogdanova N, Bork C, Hell R. Cysteine biosynthesis in plants: isolation and functional identification of a cDNA encoding a serine acetyltransferase from Arabidopsis thaliana. FEBS Lett. 358: 43-47 (1995).

Bogdanova N, Hell R. Cysteine synthesis in plants: protein-protein interactions of serine acetyltransferase from Arabidopsis thaliana. Plant J. 11: 251-262 (1997).

Bogre L, Okresz L, Henriques R, Anthony RG. Growth signalling pathways in Arabidopsis and the AGC protein kinases. Trends Plant Sci. 8: 424-431 (2003).

Bogs J, Bourbouloux A, Cagnac O, Wachter A, Rausch T, Delrot S. Functional characterization and expression analysis of a glutathione transporter, BjGT1, from Brassica juncea: evidence for regulation by heavy metal exposure. Plant Cell Environ. 26: 1703-1711 (2003).

Bohlmann J, Martin D, Oldham NJ, Gershenzon J. Terpenoid secondary metabolism in Arabidopsis thaliana: cDNA cloning, characterization, and functional expression of a myrcene/(E)-beta-ocimene synthase. Arch. Biochem. Biophys. 375: 261-269 (2000).

Bohman S, Staal J, Thomma BP, Wang M, Dixelius C. Characterisation of an Arabidopsis-Leptosphaeria maculans pathosystem: resistance partially requires camalexin biosynthesis and is independent of salicylic acid, ethylene and jasmonic acid signalling. Plant J. 37: 9-20 (2004).

Bohme K, Li Y, Charlot F, Grierson C, Marrocco K, Okada K, Laloue M, Nogue F. The Arabidopsis COW1 gene encodes a phosphatidylinositol transfer protein essential for root hair tip growth. Plant J. 40: 686-698 (2004).

Bohmer M, Romeis T. A chemical-genetic approach to elucidate protein kinase function in planta. Plant Mol. Biol. 65: 817-827 (2007).

Bohmert K, Balbo I, Kopka J, Mittendorf V, Nawrath C, Poirier Y, Tischendorf G, Trethewey RN, Willmitzer L. Transgenic Arabidopsis plants can accumulate polyhydroxybutyrate to up to 4% of their fresh weight. Planta 211: 841-845 (2000).

Bohmert K, Balbo I, Steinbuchel A, Tischendorf G, Willmitzer L. Constitutive expression of the beta-ketothiolase gene in transgenic plants. A major obstacle for obtaining polyhydroxybutyrate-producing plants. Plant Physiol. 128: 1282-1290 (2002).

Boivin K, Acarkan A, Mbulu RS, Clarenz O, Schmidt R. The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes. Plant Physiol. 135: 735-744 (2004).

Boldt R, Edner C, Kolukisaoglu U, Hagemann M, Weckwerth W, Wienkoop S, Morgenthal K, Bauwe H. D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell 17: 2413-2420 (2005).

Bollenbach TJ, Sharwood RE, Gutierrez R, Lerbs-Mache S, Stern DB. The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis. Plant Mol. Biol. 69: 541-552 (2009).

Bolognese CP, McGraw P. The isolation and characterization in yeast of a gene for Arabidopsis S-adenosylmethionine:phospho-ethanolamine N-methyltransferase. Plant Physiol. 124: 1800-1813 (2000).

Bolter B, Sharma R, Soll J. Localisation of Arabidopsis NDPK2-revisited. Planta 226: 1059-1065 (2007).

Bolwell GP, Bindschedler LV, Blee KA, Butt VS, Davies DR, Gardner SL, Gerrish C, Minibayeva F. The apoplastic oxidative burst in response to biotic stress in plants: a three-component system. J. Exp. Bot. 53: 1367-1376 (2002).

Bonardi V, Pesaresi P, Becker T, Schleiff E, Wagner R, Pfannschmidt T, Jahns P, Leister D. Photosystem II core phosphorylation and photosynthetic acclimation require two different protein kinases. Nature 437: 1179-1182 (2005).

Bonaventure G, Bao X, Ohlrogge J, Pollard M. Metabolic responses to the reduction in palmitate caused by disruption of the FATB gene in Arabidopsis. Plant Physiol. 135: 1269-1279 (2004).

Bonaventure G, Beisson F, Ohlrogge J, Pollard M. Analysis of the aliphatic monomer composition of polyesters associated with Arabidopsis epidermis: occurrence of octadeca-cis-6, cis-9-diene-1,18-dioate as the major component. Plant J. 40: 920-930 (2004).

Bonaventure G, Gfeller A, Proebsting WM, Hortensteiner S, Chetelat A, Martinoia E, Farmer EE. A gain-of-function allele of TPC1 activates oxylipin biogenesis after leaf wounding in Arabidopsis. Plant J. 49: 889-898 (2007).

Bonaventure G, Gfeller A, Rodriguez VM, Armand F, Farmer EE. The fou2 gain-of-function allele and the wild-type allele of Two Pore Channel 1 contribute to different extents or by different mechanisms to defense gene expression in Arabidopsis. Plant Cell Physiol. 48: 1775-1789 (2007).

Bonaventure G, Ohlrogge JB. Differential regulation of mRNA levels of acyl carrier protein isoforms in Arabidopsis. Plant Physiol. 128: 223-235 (2002).

Bonaventure G, Salas JJ, Pollard MR, Ohlrogge JB. Disruption of the FATB gene in Arabidopsis demonstrates an essential role of saturated fatty acids in plant growth. Plant Cell 15: 1020-1033 (2003).

Bond DM, Wilson IW, Dennis ES, Pogson BJ, Jean Finnegan E. VERNALIZATION INSENSITIVE 3 (VIN3) is required for the response of Arabidopsis thaliana seedlings exposed to low oxygen conditions. Plant J. 59: 576-587 (2009).

Bonfig KB, Schreiber U, Gabler A, Roitsch T, Berger S. Infection with virulent and avirulent P. syringae strains differentially affects photosynthesis and sink metabolism in Arabidopsis leaves. Planta 225: 1-12 (2006).

Bongcam V, MacDonald-Comber Petetot J, Mittendorf V, Robertson EJ, Leech RM, Qin YM, Hiltunen JK, Poirier Y. Importance of sequences adjacent to the terminal tripeptide in the import of a peroxisomal Candida tropicalis protein in plant peroxisomes. Planta 211: 150-157 (2000).

Bonham-Smith PC, Moloney MM. Nucleotide and protein sequences of a cytoplasmic ribosomal protein S15a gene from Arabidopsis thaliana. Plant Physiol. 106: 401-402 (1994).

Bonin CP, Freshour G, Hahn MG, Vanzin GF, Reiter WD. The GMD1 and GMD2 genes of Arabidopsis encode isoforms of GDP-D-mannose 4,6-dehydratase with cell type-specific expression patterns. Plant Physiol. 132: 883-892 (2003).

Bonner ER, Cahoon RE, Knapke SM, Jez JM. Molecular basis of cysteine biosynthesis in plants: structural and functional analysis of O-acetylserine sulfhydrylase from Arabidopsis thaliana. J. Biol. Chem. 280: 38803-38013 (2005).

Bonza MC, Luoni L, De Michelis MI. Functional expression in yeast of an N-deleted form of At-ACA8, a plasma membrane Ca(2+)-ATPase of Arabidopsis thaliana, and characterization of a hyperactive mutant. Planta 218: 814-823 (2004).

Bonza MC, Morandini P, Luoni L, Geisler M, Palmgren MG, De Michelis MI. At-ACA8 encodes a plasma membrane-localized calcium-ATPase of Arabidopsis with a calmodulin-binding domain at the N terminus. Plant Physiol. 123: 1495-1506 (2000).

Booij-James IS, Dube SK, Jansen MA, Edelman M, Mattoo AK. Ultraviolet-B radiation impacts light-mediated turnover of the photosystem II reaction center heterodimer in Arabidopsis mutants altered in phenolic metabolism. Plant Physiol. 124: 1275-1284 (2000).

Booij-James IS, Edelman M, Mattoo AK. Nitric oxide donor-mediated inhibition of phosphorylation shows that light-mediated degradation of photosystem II D1 protein and phosphorylation are not tightly linked. Planta 229: 1347-1352 (2009).

Book AJ, Smalle J, Lee KH, Yang P, Walker JM, Casper S, Holmes JH, Russo LA, Buzzinotti ZW, Jenik PD, Vierstra RD. The RPN5 subunit of the 26s proteasome is essential for gametogenesis, sporophyte development, and complex assembly in Arabidopsis. Plant Cell 21: 460-478 (2009).

Book AJ, Yang P, Scalf M, Smith LM, Vierstra RD. Tripeptidyl peptidase II. An oligomeric protease complex from Arabidopsis. Plant Physiol. 138: 1046-1057 (2005).

Booker J, Chatfield S, Leyser O. Auxin acts in xylem-associated or medullary cells to mediate apical dominance. Plant Cell 15: 495-507 (2003).

Boonman A, Prinsen E, Gilmer F, Schurr U, Peeters AJ, Voesenek LA, Pons TL. Cytokinin import rate as a signal for photosynthetic acclimation to canopy light gradients. Plant Physiol. 143: 1841-1852 (2007).

Boonman A, Prinsen E, Voesenek LA, Pons TL. Redundant roles of photoreceptors and cytokinins in regulating photosynthetic acclimation to canopy density. J. Exp. Bot. 60: 1179-1190 (2009).

Boorer KJ, Fischer WN. Specificity and stoichiometry of the Arabidopsis H+ amino acid transporter AAP5. J. Biol. Chem. 272: 13040-13046 (1997).

Boorer KJ, Frommer WB, Bush DR, Kreman M, Loo DD, Wright EM. Kinetics and specificity of a H+/amino acid transporter from Arabidopsis thaliana. J. Biol. Chem. 271: 2213-2220 (1996).

Boothe JG, Sonnichsen FD, de Beus MD, Johnson-Flanagan AM. Purification, characterization, and structural analysis of a plant low-temperature-induced protein. Plant Physiol. 113: 367-376 (1997).

Borecky J, Nogueira FT, de Oliveira KA, Maia IG, Vercesi AE, Arruda P. The plant energy-dissipating mitochondrial systems: depicting the genomic structure and the expression profiles of the gene families of uncoupling protein and alternative oxidase in monocots and dicots. J. Exp. Bot. 57: 849-864 (2006).

Borevitz JO, Liang D, Plouffe D, Chang HS, Zhu T, Weigel D, Berry CC, Winzeler E, Chory J. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res. 13: 513-523 (2003).

Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfern JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigel D, Chory J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics 160: 683-696 (2002).

Borevitz JO, Nordborg M. The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiol. 132: 718-725 (2003).

Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12: 2383-2394 (2000).

Borges F, Gomes G, Gardner R, Moreno N, McCormick S, Feijo JA, Becker JD. Comparative transcriptomics of Arabidopsis thaliana sperm cells. Plant Physiol. 148: 1168-1181 (2008).

Borghi L, Bureau M, Simon R. Arabidopsis JAGGED LATERAL ORGANS is expressed in boundaries and coordinates KNOX and PIN activity. Plant Cell 19: 1795-808 (2007).

Bork C, Schwenn JD, Hell R. Isolation and characterization of a gene for assimilatory sulfite reductase from Arabidopsis thaliana. Gene 212: 147-153 (1998).

Borner GH, Lilley KS, Stevens TJ, Dupree P. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Plant Physiol. 132: 568-577 (2003).

Borner GH, Sherrier DJ, Stevens TJ, Arkin IT, Dupree P. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Plant Physiol. 129: 486-499 (2002).

Borner GH, Sherrier DJ, Weimar T, Michaelson LV, Hawkins ND, Macaskill A, Napier JA, Beale MH, Lilley KS, Dupree P. Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. Plant Physiol. 137: 104-116 (2005).

Borrell A, Cutanda MC, Lumbreras V, Pujal J, Goday A, Culianez-Macia FA, Pages M. Arabidopsis thaliana atrab28: a nuclear targeted protein related to germination and toxic cation tolerance. Plant Mol. Biol. 50: 249-259 (2002).

Borsani O, Valpuesta V, Botella MA. Evidence for a role of salicylic acid in the oxidative damage generated by NaCl and osmotic stress in Arabidopsis seedlings. Plant Physiol. 126: 1024-1030 (2001).

Borsics T, Webb D, Andeme-Ondzighi C, Staehelin LA, Christopher DA. The cyclic nucleotide-gated calmodulin-binding channel AtCNGC10 localizes to the plasma membrane and influences numerous growth responses and starch accumulation in Arabidopsis thaliana. Planta 225: 563-573 (2007).

Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S. ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize. Plant Cell 18: 574-585 (2006).

Bortiri E, Jackson D, Hake S. Advances in maize genomics: the emergence of positional cloning. Curr. Opin. Plant Biol. 9: 164-171 (2006).

Bosca S, Barton CJ, Taylor NG, Ryden P, Neumetzler L, Pauly M, Roberts K, Seifert GJ. Interactions between MUR10/CesA7 dependent secondary cellulose biosynthesis and primary cell wall structure. Plant Physiol. 142: 1353-1363 (2006).

Bossi F, Cordoba E, Dupré P, Mendoza MS, Román CS, León P. The Arabidopsis ABA-INSENSITIVE (ABI) 4 factor acts as a central transcription activator of the expression of its own gene, and for the induction of ABI5 and SBE2.2 genes during sugar signaling. Plant J. 59: 359-374 (2009).

Bostick M, Lochhead SR, Honda A, Palmer S, Callis J. Related to ubiquitin 1 and 2 are redundant and essential and regulate vegetative growth, auxin signaling, and ethylene production in Arabidopsis. Plant Cell 16: 2418-2432 (2004).

Botella MA, Parker JE, Frost LN, Bittner-Eddy PD, Beynon JL, Daniels MJ, Holub EB, Jones JD. Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell 10: 1847-1860 (1998).

Botella-Pavia P, Besumbes O, Phillips MA, Carretero-Paulet L, Boronat A, Rodriguez-Concepcion M. Regulation of carotenoid biosynthesis in plants: evidence for a key role of hydroxymethylbutenyl diphosphate reductase in controlling the supply of plastidial isoprenoid precursors. Plant J. 40: 188-199 (2004).

Bottcher C, Roepenack-Lahaye EV, Schmidt J, Schmotz C, Neumann S, Scheel D, Clemens S. Metabolome analysis of biosynthetic mutants reveals diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis thaliana. Plant Physiol. 147: 2107-2120 (2008).

Bottcher C, Weiler EW. cyclo-Oxylipin-galactolipids in plants: occurrence and dynamics. Planta 226: 629-637 (2007).

Botto JF, Alonso-Blanco C, Garzaron I, Sanchez RA, Casal JJ. The Cape Verde Islands allele of cryptochrome 2 enhances cotyledon unfolding in the absence of blue light in Arabidopsis. Plant Physiol. 133: 1547-1556 (2003).

Botto JF, Smith H. Differential genetic variation in adaptive strategies to a common environmental signal in Arabidopsis accessions: phytochrome-mediated shade avoidance. Plant Cell Environ. 25: 53-63 (2002).

Botton A, Galla G, Conesa A, Bachem C, Ramina A, Barcaccia G. Large-scale gene ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology. BMC Genomics 9: 347 (2008).

Bou Daher F, Chebli Y, Geitmann A. Optimization of conditions for germination of cold-stored Arabidopsis thaliana pollen. Plant Cell Rep. 28: 347-357 (2009).

Bouche N, Bouchez D. Arabidopsis gene knockout: phenotypes wanted. Curr. Opin. Plant Biol. 4: 111-117 (2001).

Bouche N, Fait A, Bouchez D, Moller SG, Fromm H. Mitochondrial succinic-semialdehyde dehydrogenase of the gamma-aminobutyrate shunt is required to restrict levels of reactive oxygen intermediates in plants. Proc. Natl. Acad. Sci. U.S.A. 100: 6843-6848 (2003).

Bouche N, Fait A, Zik M, Fromm H. The root-specific glutamate decarboxylase (GAD1) is essential for sustaining GABA levels in Arabidopsis. Plant Mol. Biol. 55: 315-325 (2004).

Boucheron E, Healy JH, Bajon C, Sauvanet A, Rembur J, Noin M, Sekine M, Riou Khamlichi C, Murray JA, Van Onckelen H, Chriqui D. Ectopic expression of Arabidopsis CYCD2 and CYCD3 in tobacco has distinct effects on the structural organization of the shoot apical meristem. J. Exp. Bot. 56: 123-134 (2005).

Boudolf V, Barroco R, Engler Jde A, Verkest A, Beeckman T, Naudts M, Inze D, De Veylder L. B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana. Plant Cell 16: 945-955 (2004).

Boudolf V, Inze D, De Veylder L. What if higher plants lack a CDC25 phosphatase? Trends Plant Sci. 11: 474-479 (2006).

Boudolf V, Vlieghe K, Beemster GT, Magyar Z, Torres Acosta JA, Maes S, Van Der Schueren E, Inze D, De Veylder L. The plant-specific cyclin-dependent kinase CDKB1;1 and transcription factor E2Fa-DPa control the balance of mitotically dividing and endoreduplicating cells in Arabidopsis. Plant Cell 16: 2683-2692 (2004).

Boudsocq M, Barbier-Brygoo H, Lauriere C. Identification of nine SNF1-related protein kinases 2 activated by hyperosmotic and saline stresses in Arabidopsis thaliana. J. Biol. Chem. 279: 41758-41766 (2004).

Boudsocq M, Droillard MJ, Barbier-Brygoo H, Lauriere C. Different phosphorylation mechanisms are involved in the activation of sucrose non-fermenting 1 related protein kinases 2 by osmotic stresses and abscisic acid. Plant Mol. Biol. 63: 491-503 (2007).

Boulay J-L, Miot S. Plant biotechnology, Biochemical engineering, Web alert. Curr. Opin. Biotechnol. 12: 121 (2001).

Bouly JP, Giovani B, Djamei A, Mueller M, Zeugner A, Dudkin EA, Batschauer A, Ahmad M. Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1. Eur. J. Biochem. 270: 2921-2928 (2003).

Bourgis F, Botha FC, Mani S, Hiten FN, Rigden DJ, Verbruggen N. Characterization and functional investigation of an Arabidopsis cDNA encoding a homologue to the d-PGMase superfamily. J. Exp. Bot. 56: 1129-1142 (2005).

Bourgis F, Roje S, Nuccio ML, Fisher DB, Tarczynski MC, Li C, Herschbach C, Rennenberg H, Pimenta MJ, Shen TL, Gage DA, Hanson AD. S-Methylmethionine plays a major role in phloem sulfur transport and is synthesized by a novel type of methyltransferase. Plant Cell 11: 1485-1498 (1999).

Boursiac Y, Boudet J, Postaire O, Luu DT, Tournaire-Roux C, Maurel C. Stimulus-induced down-regulation of root water transport involves reactive oxygen species-activated cell signalling and plasma membrane intrinsic protein internalization. Plant J. 56: 207-218 (2008).

Boursiac Y, Chen S, Luu DT, Sorieul M, van den Dries N, Maurel C. Early effects of salinity on water transport in Arabidopsis roots. Molecular and cellular features of aquaporin expression. Plant Physiol. 139: 790-805 (2005).

Bouton S, Leboeuf E, Mouille G, Leydecker MT, Talbotec J, Granier F, Lahaye M, Hofte H, Truong HN. QUASIMODO1 encodes a putative membrane-bound glycosyltransferase required for normal pectin synthesis and cell adhesion in Arabidopsis. Plant Cell 14: 2577-2590 (2002).

Bouvier F, Linka N, Isner JC, Mutterer J, Weber AP, Camara B. Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development. Plant Cell 18: 3088-3105 (2006).

Bouvier F, Suire C, D'Harlingue A, Backhaus RA, Camara B. Molecular cloning of geranyl diphosphate synthase and compartmentation of monoterpene synthesis in plant cells. Plant J. 24: 241-252 (2000).

Bouwmeester HJ, Matusova R, Zhongkui S, Beale MH. Secondary metabolite signalling in host-parasitic plant interactions. Curr. Opin. Plant Biol. 6: 358-364 (2003).

Bove J, Kim CY, Gibson CA, Assmann SM. Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Plant Mol. Biol. 67: 71-88 (2008).

Bovet L, Eggmann T, Meylan-Bettex M, Polier J, Kammer P, Marin E, Feller U, Martinoia E. Transcript levels of AtMRPs after cadmium treatment: induction of AtMRP3. Plant Cell Environ. 26: 371-381 (2003).

Bovy A, Van den Berg C, De Vrieze G, Thompson WF, Weisbeek P, Smeekens S. Light-regulated expression of the Arabidopsis thaliana ferredoxin gene requires sequences upstream and downstream of the transcription initiation site. Plant Mol. Biol. 27: 27-39 (1995).

Bown AW, Zhang GJ. Mechanical stimulation, 4-aminobutyric acid (GABA) synthesis, and growth inhibition in soybean hypocotyl tissue. Can. J. Bot. 78: 119-123 (2000).

Boxall SF, Foster JM, Bohnert HJ, Cushman JC, Nimmo HG, Hartwell J. Conservation and divergence of circadian clock operation in a stress-inducible Crassulacean acid metabolism species reveals clock compensation against stress. Plant Physiol. 137: 969-982 (2005).

Boyce JM, Coates D, Fricker MD, Evans DE. Genomic sequence of a calnexin homolog from Arabidopsis thaliana. Plant Physiol. 106: 1691 (1994).

Boyce JM, Knight H, Deyholos M, Openshaw MR, Galbraith DW, Warren G, Knight MR. The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress. Plant J. 34: 395-406 (2003).

Boyes DC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Gorlach J. Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13: 1499-1510 (2001).

Boyko A, Zemp F, Filkowski J, Kovalchuk I. Double-strand break repair in plants is developmentally regulated. Plant Physiol. 141: 488-497 (2006).

Bozzo GG, Basset GJ, Naponelli V, Noiriel A, Gregory JF 3rd, Hanson AD. Characterization of the folate salvage enzyme p-aminobenzoylglutamate hydrolase in plants. Phytochemistry 69: 29-37 (2008).

Bozzo GG, Dunn EL, Plaxton WC. Differential synthesis of phosphate-starvation inducible purple acid phosphatase isozymes in tomato (Lycopersicon esculentum) suspension cells and seedlings. Plant Cell Environ. 29: 303-313 (2006).

Bozzo GG, Raghothama KG, Plaxton WC. Purification and characterization of two secreted purple acid phosphatase isozymes from phosphate-starved tomato (Lycopersicon esculentum) cell cultures. Eur. J. Biochem. 269: 6278-6286 (2002).

Braam J, Sistrunk ML, Polisensky DH, Xu W, Purugganan MM, Antosiewicz DM, Campbell P, Johnson KA. Plant responses to environmental stress: regulation and functions of the Arabidopsis TCH genes. Planta 203 Suppl.: 35S-41S (1997).

Bracha-Drori K, Shichrur K, Katz A, Oliva M, Angelovici R, Yalovsky S, Ohad N. Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Plant J. 40: 419-427 (2004).

Bracha-Drori K, Shichrur K, Lubetzky TC, Yalovsky S. Functional analysis of Arabidopsis post-prenylation CaaX processing enzymes and their function in subcellular protein targeting. Plant Physiol. 148: 119-131 (2008).

Brader G, Mikkelsen MD, Halkier BA, Tapio Palva E. Altering glucosinolate profiles modulates disease resistance in plants. Plant J. 46: 758-767 (2006).

Brader G, Tas E, Palva ET. Jasmonate-dependent induction of indole glucosinolates in Arabidopsis by culture filtrates of the nonspecific pathogen Erwinia carotovora. Plant Physiol. 126: 849-860 (2001).

Brady SM, Provart NJ. Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell 21: 1034-1051 (2009).

Brady SM, Sarkar SF, Bonetta D, McCourt P. The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. Plant J. 34: 67-75 (2003).

Brady SM, Song S, Dhugga K, Antoni-Rafalski J, Benfey PN. Combining expression and comparative evolutionary analysis. The COBRA gene family. Plant Physiol. 143: 172-187 (2007).

Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J. 56: 743-755 (2008).

Brand L, Horler M, Nuesch E, Vassalli S, Barrell P, Yang W, Jefferson RA, Grossniklaus U, Curtis MD. A versatile and reliable two-component system for tissue-specific gene induction in Arabidopsis. Plant Physiol. 141: 1194-1204 (2006).

Brand U, Grunewald M, Hobe M, Simon R. Regulation of CLV3 expression by two homeobox genes in Arabidopsis. Plant Physiol. 129: 565-575 (2002).

Brands A, Ho THD. Function of a plant stress-induced gene, HVA22. Synthetic enhancement screen with its yeast homolog reveals its role in vesicular traffic. Plant Physiol. 130: 1121-1131 (2002).

Brandstatter I, Kieber JJ. Two genes with similarity to bacterial response regulators are rapidly and specifically induced by cytokinin in Arabidopsis. Plant Cell 10: 1009-1019 (1998).

Brandt S, Kloska S, Altmann T, Kehr J. Using array hybridization to monitor gene expression at the single cell level. J. Exp. Bot. 53: 2315-2323 (2002).

Branen JK, Chiou TJ, Engeseth NJ. Overexpression of acyl carrier protein-1 alters fatty acid composition of leaf tissue in Arabidopsis. Plant Physiol. 127: 222-229 (2001).

Branen JK, Shintani DK, Engeseth NJ. Expression of antisense acyl carrier protein-4 reduces lipid content in Arabidopsis leaf tissue. Plant Physiol. 132: 748-756 (2003).

Brault M, Amiar Z, Pennarun AM, Monestiez M, Zhang Z, Cornel D, Dellis O, Knight H, Bouteau F, Rona JP. Plasma membrane depolarization induced by abscisic acid in Arabidopsis suspension cells involves reduction of proton pumping in addition to anion channel activation, which are both Ca2+ dependent. Plant Physiol. 135: 231-243 (2004).

Braun DM, Stone JM, Walker JC. Interaction of the maize and Arabidopsis kinase interaction domains with a subset of receptor-like protein kinases: implications for transmembrane signaling in plants. Plant J. 12: 83-95 (1997).

Braun N, Wyrzykowska J, Muller P, David K, Couch D, Perrot-Rechenmann C, Fleming AJ. Conditional repression of AUXIN BINDING PROTEIN1 reveals that it coordinates cell division and cell expansion during postembryonic shoot development in Arabidopsis and tobacco. Plant Cell 20: 2746-2762 (2008).

Brautigam M, Lindlof A, Zakhrabetkova S, Gharti-Chhetri G, Olsson B, Olsson O. Generation and analysis of 9792 EST sequences from cold acclimated oat, Avena sativa. BMC Plant Biol. 5: 18 (2005).

Bray EA. Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. J. Exp. Bot. 55: 2331-2341 (2004).

Bray EA. Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome. Plant Cell Environ. 25: 153-161 (2002).

Bray EA. Abscisic acid regulation of gene expression during water-deficit stress in the era of the Arabidopsis genome. Plant Cell Environ. 25: 153-161 (2002).

Bray EA. Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data. Ann. Bot. (Lond.) 89: 803-811 (2002).

Brazier-Hicks M, Edwards LA, Edwards R. Selection of plants for roles in phytoremediation: the importance of glucosylation. Plant Biotechnol. J. 5: 627-635 (2007).

Brazier-Hicks M, Edwards R. Functional importance of the family 1 glucosyltransferase UGT72B1 in the metabolism of xenobiotics in Arabidopsis thaliana. Plant J. 42: 556-566 (2005).

Brearley CA, Hanke DE. Metabolic relations of inositol 3,4,5,6-tetrakisphosphate revealed by cell permeabilization. Identification of inositol 3,4,5,6-tetrakisphosphate 1-kinase and inositol 3,4,5,6-tetrakisphosphate phosphatase activities in mesophyll cells. Plant Physiol. 122: 1209-1216 (2000).

Bregante M, Yang Y, Formentin E, Carpaneto A, Schroeder JI, Gambale F, Lo Schiavo F, Costa A. KDC1, a carrot Shaker-like potassium channel, reveals its role as a silent regulatory subunit when expressed in plant cells. Plant Mol. Biol. 66: 61-72 (2008).

Brehelin C, Meyer EH, De Souris JP, Bonnard G, Meyer Y. Resemblance and dissemblance of Arabidopsis type II peroxiredoxins: similar sequences for divergent gene expression, protein localization, and activity. Plant Physiol. 132: 2045-2057 (2003).

Breitinger U, Clausen T, Ehlert S, Huber R, Laber B, Schmidt F, Pohl E, Messerschmidt A. The three-dimensional structure of cystathionine beta-lyase from Arabidopsis and its substrate specificity. Plant Physiol. 126: 631-642 (2001).

Breitkreuz KE, Shelp BJ, Fischer WN, Schwacke R, Rentsch D. Identification and characterization of GABA, proline and quaternary ammonium compound transporters from Arabidopsis thaliana. FEBS Lett. 450: 280-284 (1999).

Brembu T, Winge P, Bones AM. The small GTPase AtRAC2/ROP7 is specifically expressed during late stages of xylem differentiation in Arabidopsis. J. Exp. Bot. 56: 2465-2476 (2005).

Brembu T, Winge P, Seem M, Bones AM. NAPP and PIRP encode subunits of a putative wave regulatory protein complex involved in plant cell morphogenesis. Plant Cell 16: 2335-2349 (2004).

Brendel V, Zhu W. Computational modeling of gene structure in Arabidopsis thaliana. Plant Mol. Biol. 48: 49-58 (2002).

Brenner ED, Feinberg P, Runko S, Coruzzi GM. A mutation in the proteosomal regulatory particle AAA-ATPase-3 in Arabidopsis impairs the light-specific hypocotyl elongation response elicited by a glutamate receptor agonist, BMAA. Plant Mol. Biol. 70: 523-533 (2009).

Brenner ED, Martinez-Barboza N, Clark AP, Liang QS, Stevenson DW, Coruzzi GM. Arabidopsis mutants resistant to S(+)-beta-methyl-alpha, beta-diaminopropionic acid, a cycad-derived glutamate receptor agonist. Plant Physiol. 124: 1615-1624 (2000).

Brenner WG, Romanov GA, Kollmer I, Burkle L, Schmulling T. Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades. Plant J. 44: 314-333 (2005).

Bresolin NS, Li Z, Kosar-Hashemi B, Tetlow IJ, Chatterjee M, Rahman S, Morell MK, Howitt CA. Characterisation of disproportionating enzyme from wheat endosperm. Planta 224: 20-31 (2006).

Bressan RA, Zhang C, Zhang H, Hasegawa PM, Bohnert HJ, Zhu JK. Learning from the Arabidopsis experience. The next gene search paradigm. Plant Physiol. 127: 1354-1360 (2001).

Breton G, Danyluk J, Charron JB, Sarhan F. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Plant Physiol. 132: 64-74 (2003).

Breuil-Broyer S, Morel P, de Almeida-Engler J, Coustham V, Negrutiu I, Trehin C. High-resolution boundary analysis during Arabidopsis thaliana flower development. Plant J. 38: 182-192 (2004).

Brewer PB, Dun EA, Ferguson BJ, Rameau C, Beveridge CA. Strigolactone acts downstream of auxin to regulate bud outgrowth in pea and Arabidopsis. Plant Physiol. 150: 482-493 (2009).

Briere C, Barthou H, Jauneau A, Alibert G, Petitprez M. The actin cytoskeleton is involved in signalling protoplast embryogenesis induced by agarose embedding. Physiol. Plant. 122: 115-122 (2004).

Briggs GC, Mouchel CF, Hardtke CS. Characterization of the plant-specific BREVIS RADIX gene family reveals limited genetic redundancy despite high sequence conservation. Plant Physiol. 140: 1306-1316 (2006).

Briggs GC, Osmont KS, Shindo C, Sibout R, Hardtke CS. Unequal genetic redundancies in Arabidopsis - a neglected phenomenon? Trends Plant Sci. 11: 492-498 (2006).

Briggs WR, Liscum E. The role of mutants in the search for the photoreceptor for phototropism in higher plants. Plant Cell Environ. 20: 768-772 (1997).

Bright J, Desikan R, Hancock JT, Weir IS, Neill SJ. ABA-induced NO generation and stomatal closure in Arabidopsis are dependent on HO synthesis. Plant J. 45: 113-122 (2006).

Brigneti G, Martin-Hernandez AM, Jin H, Chen J, Baulcombe DC, Baker B, Jones JD. Virus-induced gene silencing in Solanum species. Plant J. 39: 264-272 (2004).

Brini F, Gaxiola RA, Berkowitz GA, Masmoudi K. Cloning and characterization of a wheat vacuolar cation/proton antiporter and pyrophosphatase proton pump. Plant Physiol. Biochem. 43: 347-354 (2005).

Britt AB, Chen JJ, Wykoff D, Mitchell D. A UV-sensitive mutant of Arabidopsis defective in the repair of pyrimidine-pyrimidinone(6-4) dimers. Science 261: 1571-1574 (1993).

Britt AB, May GD. Re-engineering plant gene targeting. Trends Plant Sci. 8: 90-95 (2003).

Britto DT, Kronzucker HJ. Constancy of nitrogen turnover kinetics in the plant cell: insights into the integration of subcellular N fluxes. Planta 213: 175-181 (2001).

Brocard IM, Lynch TJ, Finkelstein RR. Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response. Plant Physiol. 129: 1533-1543 (2002).

Brocard-Gifford I, Lynch TJ, Garcia ME, Malhotra B, Finkelstein RR. The Arabidopsis thaliana abscisic acid-insensitive8 locus encodes a novel protein mediating abscisic acid and sugar responses essential for growth. Plant Cell 16: 406-421 (2004).

Brocard-Gifford IM, Lynch TJ, Finkelstein RR. Regulatory networks in seeds integrating developmental, abscisic acid, sugar, and light signaling. Plant Physiol. 131: 78-92 (2003).

Brock A, Brandt W, Drager B. The functional divergence of short-chain dehydrogenases involved in tropinone reduction. Plant J. 54: 388-401 (2008).

Brodelius M, Hiraiwa M, Marttila S, Al Karadaghi S, Picaud S, Brodelius PE. Immunolocalization of the saposin-like insert of plant aspartic proteinases exhibiting saposin C activity. Expression in young flower tissues and in barley seeds. Physiol. Plant. 125: 405-418 (2005).

Brodersen P, Malinovsky FG, Hematy K, Newman MA, Mundy J. The role of salicylic acid in the induction of cell death in Arabidopsis acd11. Plant Physiol. 138: 1037-1045 (2005).

Brodersen P, Petersen M, Bjorn Nielsen H, Zhu S, Newman MA, Shokat KM, Rietz S, Parker J, Mundy J. Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4. Plant J. 47: 532-546 (2006).

Broun P. Transcriptional control of flavonoid biosynthesis: a complex network of conserved regulators involved in multiple aspects of differentiation in Arabidopsis. Curr. Opin. Plant Biol. 8: 272-279 (2005).

Broun P, Somerville C. Accumulation of ricinoleic, lesquerolic, and densipolic acids in seeds of transgenic Arabidopsis plants that express a fatty acyl hydroxylase cDNA from castor bean. Plant Physiol. 113: 933-942 (1997).

Brown AP, Affleck V, Fawcett T, Slabas AR. Tandem affinity purification tagging of fatty acid biosynthetic enzymes in Synechocystis sp. PCC6803 and Arabidopsis thaliana. J. Exp. Bot. 57: 1563-1571 (2006).

Brown BA, Cloix C, Jiang GH, Kaiserli E, Herzyk P, Kliebenstein DJ, Jenkins GI. A UV-B-specific signaling component orchestrates plant UV protection. Proc. Natl. Acad. Sci. U.S.A. 102: 18225-18230 (2005).

Brown DE, Rashotte AM, Murphy AS, Normanly J, Tague BW, Peer WA, Taiz L, Muday GK. Flavonoids act as negative regulators of auxin transport in vivo in Arabidopsis. Plant Physiol. 126: 524-535 (2001).

Brown DM, Goubet F, Wong VW, Goodacre R, Stephens E, Dupree P, Turner SR. Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. Plant J. 52: 1154-1168 (2007).

Brown DM, Zeef LA, Ellis J, Goodacre R, Turner SR. Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. Plant Cell 17: 2281-2295 (2005).

Brown DM, Zhang Z, Stephens E, Dupree P, Turner SR. Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis. Plant J. 57: 732-746 (2009).

Brown GG, Formanova N, Jin H, Wargachuk R, Dendy C, Patil P, Laforest M, Zhang J, Cheung WY, Landry BS. The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats. Plant J. 35: 262-272 (2003).

Brown NJ, Parsley K, Hibberd JM. The future of C4 research--maize, Flaveria or Cleome? Trends Plant Sci. 10: 215-221 (2005).

Brown NJ, Sullivan JA, Gray JC. Light and plastid signals regulate the expression of the pea plastocyanin gene through a common region at the 5' end of the coding region. Plant J. 43: 541-552 (2005).

Brown PD, Tokuhisa JG, Reichelt M, Gershenzon J. Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana. Phytochemistry 62: 471-481 (2003).

Brown PH, Bellaloui N, Wimmer MA, Bassil ES, Ruiz J, Hu H, Pfeffer H, Dannel F, Romheld V. Boron in plant biology. Plant Biol. 4: 205-223 (2002).

Brown RL, Kazan K, McGrath KC, Maclean DJ, Manners JM. A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis. Plant Physiol. 132: 1020-1032 (2003).

Brownfield DL, Todd CD, Deyholos MK. Analysis of Arabidopsis arginase gene transcription patterns indicates specific biological functions for recently diverged paralogs. Plant Mol. Biol. 67: 429-440 (2008).

Browse J. Jasmonate passes muster: a receptor and targets for the defense hormone. Annu. Rev. Plant Biol. 60: 183-205 (2009).

Browse J, Xin Z. Temperature sensing and cold acclimation. Curr. Opin. Plant Biol. 4: 241-246 (2001).

Bruggemann L, Dietrich P, Dreyer I, Hedrich R. Pronounced differences between the native K+ channels and KAT1 and KST1 alpha-subunit homomers of guard cells. Planta 207: 370-376 (1999).

Brugiere S, Kowalski S, Ferro M, Seigneurin-Berny D, Miras S, Salvi D, Ravanel S, D'Herin P, Garin J, Bourguignon J, Joyard J, Rolland N. The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions. Phytochemistry 65: 1693-1707 (2004).

Brugmans B, Del Carmen AF, Bachem CW, Van Os H, Van Eck HJ, Visser RG. A novel method for the construction of genome wide transcriptome maps. Plant J. 31: 211-222 (2002).

Bruhl A, Haverkamp T, Gisselmann G, Schwenn JD. A cDNA clone from Arabidopsis thaliana encoding plastidic ferredoxin:sulfite reductase. Biochim. Biophys. Acta 1295: 119-124 (1996).

Brukhin V, Gheyselinck J, Gagliardini V, Genschik P, Grossniklaus U. The RPN1 subunit of the 26S proteasome in Arabidopsis is essential for embryogenesis. Plant Cell 17: 2723-2737 (2005).

Brummell DA, Balint-Kurti PJ, Harpster MH, Palys JM, Oeller PW, Gutterson N. Inverted repeat of a heterologous 3'-untranslated region for high-efficiency, high-throughput gene silencing. Plant J. 33: 793-800 (2003).

Brunaud V, Balzergue S, Dubreucq B, Aubourg S, Samson F, Chauvin S, Bechtold N, Cruaud C, DeRose R, Pelletier G, Lepiniec L, Caboche M, Lecharny A. T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites. EMBO Rep. 3: 1152-1157 (2002).

Bruneau L, Chapman R, Marsolais F. Co-occurrence of both L-asparaginase subtypes in Arabidopsis: At3g16150 encodes a K(+)-dependent L-asparaginase. Planta 224: 668-679 (2006).

Bruno AK, Wetzel CM. The early light-inducible protein (ELIP) gene is expressed during the chloroplast-to-chromoplast transition in ripening tomato fruit. J. Exp. Bot. 55: 2541-2548 (2004).

Brychkova G, Alikulov Z, Fluhr R, Sagi M. A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant. Plant J. 54: 496-509 (2008).

Brychkova G, Xia Z, Yang G, Yesbergenova Z, Zhang Z, Davydov O, Fluhr R, Sagi M. Sulfite oxidase protects plants against sulfur dioxide toxicity. Plant J. 50: 696-709 (2007).

Bu Q, Li H, Zhao Q, Jiang H, Zhai Q, Zhang J, Wu X, Sun J, Xie Q, Wang D, Li C. The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development. Plant Physiol. 150: 463-481 (2009).

Bubier J, Schlappi M. Cold induction of EARLI1, a putative Arabidopsis lipid transfer protein, is light and calcium dependent. Plant Cell Environ. 27: 929-936 (2004).

Buchanan-Wollaston V, Earl S, Harrison E, Mathas E, Navabpour S, Page T, Pink D. The molecular analysis of leaf senescence - a genomics approach. Plant Biotechnol. J. 1: 3-22 (2003).

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 42: 567-585 (2005).

Buche C, Poppe C, Schafer E, Kretsch T. eid1. A new Arabidopsis mutant hypersensitive in phytochrome a-dependent high-irradiance responses. Plant Cell 12: 547-558 (2000).

Buckler ES, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, Ersoz E, Flint-Garcia S, Garcia A, Glaubitz JC, Goodman MM, Harjes C, Guill K, Kroon DE, Larsson S, Lepak NK, Li H, Mitchell SE, Pressoir G, Peiffer JA, Rosas MO, Rocheford TR, et al. The genetic architecture of maize flowering time. Science 325: 714-718 (2009).

Budhiraja R, Hermkes R, Muller S, Schmidt J, Colby T, Panigrahi K, Coupland G, Bachmair A. Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation. Plant Physiol. 149: 1529-1540 (2009).

Buer CS, Djordjevic MA. Architectural phenotypes in the transparent testa mutants of Arabidopsis thaliana. J. Exp. Bot. 60: 751-763 (2009).

Buer CS, Muday GK. The transparent testa4 mutation prevents flavonoid synthesis and alters auxin transport and the response of Arabidopsis roots to gravity and light. Plant Cell 16: 1191-1205 (2004).

Buer CS, Muday GK, Djordjevic MA. Flavonoids are differentially taken up and transported long distances in Arabidopsis. Plant Physiol. 145: 478-490 (2007).

Buer CS, Sukumar P, Muday GK. Ethylene modulates flavonoid accumulation and gravitropic responses in roots of Arabidopsis. Plant Physiol. 140: 1384-1396 (2006).

Buer CS, Wasteneys GO, Masle J. Ethylene modulates root-wave responses in Arabidopsis. Plant Physiol. 132: 1085-1096 (2003).

Buer CS, Weathers PJ, Swartzlander GA Jr. Changes in hechtian strands in cold-hardened cells measured by optical microsurgery. Plant Physiol. 122: 1365-1378 (2000).

Bueso E, Alejandro S, Carbonell P, Perez-Amador MA, Fayos J, Belles JM, Rodriguez PL, Serrano R. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J. 52: 1052-1065 (2007).

Bughio N, Yamaguchi H, Nishizawa NK, Nakanishi H, Mori S. Cloning an iron-regulated metal transporter from rice. J. Exp. Bot. 53: 1677-1682 (2002).

Bukhov NG, Heber U, Wiese C, Shuvalov VA. Energy dissipation in photosynthesis: does the quenching of chlorophyll fluorescence originate from antenna complexes of photosystem II or from the reaction center? Planta 212: 749-758 (2001).

Bulley SM, Rassam M, Hoser D, Otto W, Schünemann N, Wright M, MacRae E, Gleave A, Laing W. Gene expression studies in kiwifruit and gene over-expression in Arabidopsis indicates that GDP-L-galactose guanyltransferase is a major control point of vitamin C biosynthesis. J. Exp. Bot. 60: 765-778 (2009).

Bundock P, Hooykaas P. Severe developmental defects, hypersensitivity to DNA-damaging agents, and lengthened telomeres in Arabidopsis MRE11 mutants. Plant Cell 14: 2451-2462 (2002).

Burbulis IE, Winkel-Shirley B. Interactions among enzymes of the Arabidopsis flavonoid biosynthetic pathway. Proc. Natl. Acad. Sci. U.S.A. 96: 12929-12934 (1999).

Burch-Smith TM, Schiff M, Liu Y, Dinesh-Kumar SP. Efficient virus induced gene silencing in Arabidopsis thaliana. Plant Physiol. 142: 21-27 (2006).

Burdon RH, O'Kane D, Fadzillah N, Gill V, Boyd PA, Finch RR. Oxidative stress and responses in Arabidopsis thaliana and Oryza sativa subjected to chilling and salinity stress. Biochem. Soc. Trans. 24: 469-472 (1996).

Burgal J, Shockey J, Lu C, Dyer J, Larson T, Graham I, Browse J. Metabolic engineering of hydroxy fatty acid production in plants: RcDGAT2 drives dramatic increases in ricinoleate levels in seed oil. Plant Biotechnol. J. 6: 819-831 (2008).

Burger C, Rondet S, Benveniste P, Schaller H. Virus-induced silencing of sterol biosynthetic genes: identification of a Nicotiana tabacum L. obtusifoliol-14{alpha}-demethylase (CYP51) by genetic manipulation of the sterol biosynthetic pathway in Nicotiana benthamiana L. J. Exp. Bot. 54: 1675-1683 (2003).

Burget EG, Reiter WD. The mur4 mutant of Arabidopsis is partially defective in the de novo synthesis of uridine diphospho L-arabinose. Plant Physiol. 121: 383-390 (1999).

Burget EG, Verma R, Molhoj M, Reiter WD. The biosynthesis of L-arabinose in plants: molecular cloning and characterization of a golgi-localized UDP-D-xylose 4-epimerase encoded by the MUR4 gene of Arabidopsis. Plant Cell 15: 523-531 (2003).

Burk DH, Ye ZH. Alteration of oriented deposition of cellulose microfibrils by mutation of a katanin-like microtubule-severing protein. Plant Cell 14: 2145-2160 (2002).

Burke JJ, O'Mahony PJ, Oliver MJ. Isolation of Arabidopsis mutants lacking components of acquired thermotolerance. Plant Physiol. 123: 575-588 (2000).

Burkhead JL, Abdel-Ghany SE, Morrill JM, Pilon-Smits EA, Pilon M. The Arabidopsis thaliana CUTA gene encodes an evolutionarily conserved copper binding chloroplast protein. Plant J. 34: 856-867 (2003).

Burkle L, Cedzich A, Dopke C, Stransky H, Okumoto S, Gillissen B, Kuhn C, Frommer WB. Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis. Plant J. 34: 13-26 (2003).

Burleigh SH, Harrison MJ. The down-regulation of Mt4-like genes by phosphate fertilization occurs systemically and involves phosphate translocation to the shoots. Plant Physiol. 119: 241-248 (1999).

Burleigh SH, Kristensen BK, Bechmann IE. A plasma membrane zinc transporter from Medicago truncatula is up-regulated in roots by Zn fertilization, yet down-regulated by arbuscular mycorrhizal colonization. Plant Mol. Biol. 52: 1077-1088 (2003).

Burn JE, Hocart CH, Birch RJ, Cork AC, Williamson RE. Functional analysis of the cellulose synthase genes CesA1, CesA2, and CesA3 in Arabidopsis. Plant Physiol. 129: 797-807 (2002).

Burn JE, Hurley UA, Birch RJ, Arioli T, Cork A, Williamson RE. The cellulose-deficient Arabidopsis mutant rsw3 is defective in a gene encoding a putative glucosidase II, an enzyme processing N-glycans during ER quality control. Plant J. 32: 949-960 (2002).

Burnette RN, Gunesekera BM, Gillaspy GE. An Arabidopsis inositol 5-phosphatase gain-of-function alters abscisic acid signaling. Plant Physiol. 132: 1011-1019 (2003).

Burow M, Bergner A, Gershenzon J, Wittstock U. Glucosinolate hydrolysis in Lepidium sativum--identification of the thiocyanate-forming protein. Plant Mol. Biol. 63: 49-61 (2007).

Burow M, Losansky A, Muller R, Plock A, Kliebenstein DJ, Wittstock U. The genetic basis of constitutive and herbivore-induced ESP-independent nitrile formation in Arabidopsis thaliana. Plant Physiol. 149: 561-574 (2009).

Burow M, Rice M, Hause B, Gershenzon J, Wittstock U. Cell- and tissue-specific localization and regulation of the epithiospecifier protein in Arabidopsis thaliana. Plant Mol. Biol. 64: 173-185 (2007).

Burow M, Zhang ZY, Ober JA, Lambrix VM, Wittstock U, Gershenzon J, Kliebenstein DJ. ESP and ESM1 mediate indol-3-acetonitrile production from indol-3-ylmethyl glucosinolate in Arabidopsis. Phytochemistry 69: 663-671 (2008).

Burssens S, de Almeida Engler J, Beeckman T, Richard C, Shaul O, Ferreira P, Van Montagu M, Inze D. Developmental expression of the Arabidopsis thaliana CycA2;1 gene. Planta 211: 623-631 (2000).

Burssens S, Himanen K, van de Cotte B, Beeckman T, Van Montagu M, Inze D, Verbruggen N. Expression of cell cycle regulatory genes and morphological alterations in response to salt stress in Arabidopsis thaliana. Planta 211: 632-640 (2000).

Burstenbinder K, Rzewuski G, Wirtz M, Hell R, Sauter M. The role of methionine recycling for ethylene synthesis in Arabidopsis. Plant J. 49: 238-249 (2007).

Burton RA, Shirley NJ, King BJ, Harvey AJ, Fincher GB. The CesA gene family of barley. Quantitative analysis of transcripts reveals two groups of co-expressed genes. Plant Physiol. 134: 224-236 (2004).

Busch K, Piehler J, Fromm H. Plant succinic semialdehyde dehydrogenase: dissection of nucleotide binding by surface plasmon resonance and fluorescence spectroscopy. Biochemistry 39: 10110-10117 (2000).

Busch KB, Fromm H. Plant succinic semialdehyde dehydrogenase. Cloning, purification, localization in mitochondria, and regulation by adenine nucleotides. Plant Physiol. 121: 589-598 (1999).

Busch W, Lohmann JU. Profiling a plant: expression analysis in Arabidopsis. Curr. Opin. Plant Biol. 10: 136-141 (2007).

Busch W, Wunderlich M, Schoffl F. Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J. 41: 1-14 (2005).

Buseman CM, Tamura P, Sparks AA, Baughman EJ, Maatta S, Zhao J, Roth MR, Esch SW, Shah J, Williams TD, Welti R. Wounding stimulates the accumulation of glycerolipids containing oxophytodienoic acid and dinor-oxophytodienoic acid in Arabidopsis leaves. Plant Physiol. 142: 28-39 (2006).

Bush MS, Hutchins AP, Jones AM, Naldrett MJ, Jarmolowski A, Lloyd CW, Doonan JH. Selective recruitment of proteins to 5' cap complexes during the growth cycle in Arabidopsis. Plant J. 59: 400-412 (2009).

Bush SM, Krysan PJ. Mutational evidence that the Arabidopsis MAP kinase MPK6 is involved in anther, inflorescence, and embryo development. J. Exp. Bot. 58: 2181-2191 (2007).

Bushell C, Spielman M, Scott RJ. The basis of natural and artificial postzygotic hybridization barriers in Arabidopsis species. Plant Cell 15: 1430-1442 (2003).

Busi MV, Maliandi MV, Valdez H, Clemente M, Zabaleta EJ, Araya A, Gomez-Casati DF. Deficiency of Arabidopsis thaliana frataxin alters activity of mitochondrial Fe-S proteins and induces oxidative stress. Plant J. 48: 873-882 (2006).

Busi MV, Zabaleta EJ, Araya A, Gomez-Casati DF. Functional and molecular characterization of the frataxin homolog from Arabidopsis thaliana. FEBS Lett. 576: 141-144 (2004).

Busk PK, Pujal J, Jessop A, Lumbreras V, Pages M. Constitutive protein-DNA interactions on the abscisic acid-responsive element before and after developmental activation of the rab28 gene. Plant Mol. Biol. 41: 529-536 (1999).

Busov V, Meilan R, Pearce DW, Rood SB, Ma C, Tschaplinski TJ, Strauss SH. Transgenic modification of gai or rgl1 causes dwarfing and alters gibberellins, root growth, and metabolite profiles in Populus. Planta 224: 288-299 (2006).

Busov VB, Johannes E, Whetten RW, Sederoff RR, Spiker SL, Lanz-Garcia C, Goldfarb B. An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein. Planta 218: 916-927 (2004).

Busov VB, Meilan R, Pearce DW, Ma C, Rood SB, Strauss SH. Activation tagging of a dominant gibberellin catabolism gene (GA 2-oxidase) from poplar that regulates tree stature. Plant Physiol. 132: 1283-1291 (2003).

Busquets A, Keim V, Closa M, Del Arco A, Boronat A, Arro M, Ferrer A. Arabidopsis thaliana contains a single gene encoding squalene synthase. Plant Mol. Biol. 67: 25-36 (2008).

Butaye KM, Goderis IJ, Wouters PF, Pues JM, Delaure SL, Broekaert WF, Depicker A, Cammue BP, De Bolle MF. Stable high-level transgene expression in Arabidopsis thaliana using gene silencing mutants and matrix attachment regions. Plant J. 39: 440-449 (2004).

Butenko MA, Patterson SE, Grini PE, Stenvik GE, Amundsen SS, Mandal A, Aalen RB. Inflorescence deficient in abscission controls floral organ abscission in Arabidopsis and identifies a novel family of putative ligands in plants. Plant Cell 15: 2296-2307 (2003).

Butenko MA, Stenvik GE, Alm V, Saether B, Patterson SE, Aalen RB. Ethylene-dependent and -independent pathways controlling floral abscission are revealed to converge using promoter::reporter gene constructs in the ida abscission mutant. J. Exp. Bot. 57: 3627-3637 (2006).

Butenko MA, Vie AK, Brembu T, Aalen RB, Bones AM. Plant peptides in signalling: looking for new partners. Trends Plant Sci. 14: 255-263 (2009).

Buttner M. The monosaccharide transporter(-like) gene family in Arabidopsis. FEBS Lett. 581: 2318-2324 (2007).

Buttner M, Truernit E, Baier K, Scholz-Starke J, Sontheim M, Lauterbach C, Huss VAR, Sauer N. AtSTP3, a green leaf-specific, low affinity monosaccharide-H+ symporter of Arabidopsis thaliana. Plant Cell Environ. 23: 175-184 (2000).

Buzgo M, Soltis DE, Soltis PS, Ma H. Towards a comprehensive integration of morphological and genetic studies of floral development. Trends Plant Sci. 9: 164-173 (2004).

Bykova NV, Egsgaard H, Moller IM. Identification of 14 new phosphoproteins involved in important plant mitochondrial processes. FEBS Lett. 540: 141-146 (2003).

Byrne KM, Smith SK, Ondeyka JG. Biosynthesis of nodulisporic acid A: Precursor studies. J. Am. Chem. Soc. 124: 7055-7060 (2002).

Byun YJ, Kim HJ, Lee DH. LongSAGE analysis of the early response to cold stress in Arabidopsis leaf. Planta 229: 1181-1200 (2009).

Byzova M, Verduyn C, De Brouwer D, De Block M. Transforming petals into sepaloid organs in Arabidopsis and oilseed rape: implementation of the hairpin RNA-mediated gene silencing technology in an organ-specific manner. Planta 218: 379-387 (2004).

Cabello JV, Dezar CA, Manavella PA, Chan RL. The intron of the Arabidopsis thaliana COX5c gene is able to improve the drought tolerance conferred by the sunflower Hahb-4 transcription factor. Planta 226: 1143-1154 (2007).

Cacas JL, Vailleau F, Devoine C, Ennar N, Agnel JP, Tronchet M, Ponchet M, Blein JP, Roby D, Triantaphylides C, Montillet JL. The combined action of 9 lipoxygenase and galactolipase is sufficient to bring about programmed cell death during tobacco hypersensitive response. Plant Cell Environ. 28: 1367-1378 (2005).

Cadman CS, Toorop PE, Hilhorst HW, Finch-Savage WE. Gene expression profiles of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism. Plant J. 46: 805-822 (2006).

Cagnac O, Bourbouloux A, Chakrabarty D, Zhang MY, Delrot S. AtOPT6 transports glutathione derivatives and is induced by primisulfuron. Plant Physiol. 135: 1378-1387 (2004).

Cahoon EB, Dietrich CR, Meyer K, Damude HG, Dyer JM, Kinney AJ. Conjugated fatty acids accumulate to high levels in phospholipids of metabolically engineered soybean and Arabidopsis seeds. Phytochemistry 67: 1166-1176 (2006).

Cai S, Lashbrook CC. Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling. Plant J. 48: 628-637 (2006).

Cai X, Davis EJ, Ballif J, Liang M, Bushman E, Haroldsen V, Torabinejad J, Wu Y. Mutant identification and characterization of the laccase gene family in Arabidopsis. J. Exp. Bot. 57: 2563-2569 (2006).

Cai XZ, Xu QF, Wang CC, Zheng Z. Development of a virus-induced gene-silencing system for functional analysis of the RPS2-dependent resistance signalling pathways in Arabidopsis. Plant Mol. Biol. 62: 223-232 (2006).

Cain CC, Saslowsky DE, Walker RA, Shirley BW. Expression of chalcone synthase and chalcone isomerase proteins in Arabidopsis seedlings. Plant Mol. Biol. 35: 377-381 (1997).

Cain P, Hall M, Schröder WP, Kieselbach T, Robinson C. A novel extended family of stromal thioredoxins. Plant Mol. Biol. 70: 273-281 (2009).

Cairns NG, Pasternak M, Wachter A, Cobbett CS, Meyer AJ. Maturation of Arabidopsis seeds is dependent on glutathione biosynthesis within the embryo. Plant Physiol. 141: 446-455 (2006).

Calderon-Villalobos LI, Kuhnle C, Dohmann EM, Li H, Bevan M, Schwechheimer C. The evolutionarily conserved TOUGH protein is required for proper development of Arabidopsis thaliana. Plant Cell 17: 2473-2485 (2005).

Calenge F, Saliba-Colombani V, Mahieu S, Loudet O, Daniel-Vedele F, Krapp A. Natural variation for carbohydrate content in Arabidopsis thaliana. Interaction with complex traits dissected by quantitative genetics. Plant Physiol. 141: 1630-1643 (2006).

Callard D, Axelos M, Mazzolini L. Novel molecular markers for late phases of the growth cycle of Arabidopsis thaliana cell-suspension cultures are expressed during organ senescence. Plant Physiol. 112: 705-715 (1996).

Callard D, Mazzolini L. Identification of proliferation-induced genes in Arabidopsis thaliana. Characterization of a new member of the highly evolutionarily conserved histone H2A.F/Z variant subfamily. Plant Physiol. 115: 1385-1395 (1997).

Calo L, Garcia I, Gotor C, Romero LC. Leaf hairs influence phytopathogenic fungus infection and confer an increased resistance when expressing a Trichoderma {alpha}-1,3-glucanase. J. Exp. Bot. 57: 3911-3920 (2006).

Calvo ES, Rodermel SR, Shoemaker RC. A third highly conserved group 1 Lea gene from Arabidopsis thaliana L. Plant Physiol. 106: 787-788 (1994).

Camacho-Cristobal JJ, Rexach J, Conejero G, Al-Ghazi Y, Nacry P, Doumas P. PRD, an Arabidopsis AINTEGUMENTA-like gene, is involved in root architectural changes in response to phosphate starvation. Planta 228: 511-522 (2008).

Camas A, Cardenas L, Quinto C, Lara M. Expression of different calmodulin genes in bean (Phaseolus vulgaris L.): Role of nod factor on calmodulin gene regulation. Mol. Plant Microbe Interact. 15: 428-436 (2002).

Campanella JJ, Ludwig-Mueller J, Town CD. Isolation and characterization of mutants of Arabidopsis thaliana with increased resistance to growth inhibition by indoleacetic acid-amino acid conjugates. Plant Physiol. 112: 735-745 (1996).

Campanella JJ, Olajide AF, Magnus V, Ludwig-Muller J. A novel auxin conjugate hydrolase from wheat with substrate specificity for longer side-chain auxin amide conjugates. Plant Physiol. 135: 2230-2240 (2004).

Campanoni P, Sutter JU, Davis CS, Littlejohn GR, Blatt MR. A generalized method for transfecting root epidermis uncovers endosomal dynamics in Arabidopsis root hairs. Plant J. 51: 322-330 (2007).

Campbell EJ, Schenk PM, Kazan K, Penninckx IA, Anderson JP, Maclean DJ, Cammue BP, Ebert PR, Manners JM. Pathogen-responsive expression of a putative ATP-binding cassette transporter gene conferring resistance to the diterpenoid sclareol is regulated by multiple defense signaling pathways in Arabidopsis. Plant Physiol. 133: 1272-1284 (2003).

Campbell M, Hahn FM, Poulter CD, Leustek T. Analysis of the isopentenyl diphosphate isomerase gene family from Arabidopsis thaliana. Plant Mol. Biol. 36: 323-328 (1998).

Campilho A, Garcia B, Toorn HV, Wijk HV, Campilho A, Scheres B. Time-lapse analysis of stem-cell divisions in the Arabidopsis thaliana root meristem. Plant J. 48: 619-627 (2006).

Campos N, Boronat A. Targeting and topology in the membrane of plant 3-hydroxy-3-methylglutaryl coenzyme A reductase. Plant Cell 7: 2163-2174 (1995).

Canamero RC, Bakrim N, Bouly JP, Garay A, Dudkin EE, Habricot Y, Ahmad M. Cryptochrome photoreceptors cry1 and cry2 antagonistically regulate primary root elongation in Arabidopsis thaliana. Planta 224: 995-1003 (2006).

Cancel JD, Larsen PB. Loss-of-function mutations in the ethylene receptor ETR1 cause enhanced sensitivity and exaggerated response to ethylene in Arabidopsis. Plant Physiol. 129: 1557-1567 (2002).

Cannons AC, Iida N, Solomonson LP. Expression of a cDNA clone encoding the haem-binding domain of Chlorella nitrate reductase. Biochem. J. 278: 203-209 (1991).

Cano-Delgado A, Penfield S, Smith C, Catley M, Bevan M. Reduced cellulose synthesis invokes lignification and defense responses in Arabidopsis thaliana. Plant J. 34: 351-362 (2003).

Canton FR, Quail PH. Both phya and phyB mediate light-imposed repression of PHYA gene expression in Arabidopsis. Plant Physiol. 121: 1207-1216 (1999).

Cao A, Jain A, Baldwin JC, Raghothama KG. Phosphate differentially regulates 14-3-3 family members and GRF9 plays a role in Pi-starvation induced responses. Planta 226: 1219-1230 (2007).

Cao D, Cheng H, Wu W, Meng Soo H, Peng J. Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. Plant Physiol. 142: 509-525 (2006).

Cao D, Froehlich JE, Zhang H, Cheng CL. The chlorate-resistant and photomorphogenesis-defective mutant cr88 encodes a chloroplast-targeted HSP90. Plant J. 33: 107-118 (2003).

Cao D, Hussain A, Cheng H, Peng J. Loss of function of four DELLA genes leads to light- and gibberellin-independent seed germination in Arabidopsis. Planta 223: 105-113 (2005).

Cao P, Song J, Zhou C, Weng M, Liu J, Wang F, Zhao F, Feng D, Wang B. Characterization of multiple cold induced genes from Ammopiptanthus mongolicus and functional analyses of gene AmEBP1. Plant Mol. Biol. 69: 529-539 (2009).

Cao S, Ye M, Jiang S. Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis. Plant Cell Rep. 24: 683-690 (2005).

Cao SQ, Xu QT, Cao YJ, Qian K, An K, Zhu Y, Hu BZ, Zhao HF, Kuai BK. Loss-of-function mutations in DET2 gene lead to an enhanced resistance to oxidative stress in Arabidopsis. Physiol. Plant. 123: 57-66 (2005).

Cao X, Li K, Suh SG, Guo T, Becraft PW. Molecular analysis of the CRINKLY4 gene family in Arabidopsis thaliana. Planta 220: 645-657 (2005).

Cao Y, Crawford NM, Schroeder JI. Amino terminus and the first four membrane-spanning segments of the Arabidopsis K+ channel KAT1 confer inward-rectification property of plant-animal chimeric channels. J. Biol. Chem. 270: 17697-17701 (1995).

Cao Y, Dai Y, Cui S, Ma L. Histone H2B monoubiquitination in the chromatin of FLOWERING LOCUS C regulates flowering time in Arabidopsis. Plant Cell 20: 2586-2602 (2008).

Cao Y, Ward JM, Kelly WB, Ichida AM, Gaber RF, Anderson JA, Uozumi N, Schroeder JI, Crawford NM. Multiple genes, tissue specificity, and expression-dependent modulationcontribute to the functional diversity of potassium channels in Arabidopsis thaliana. Plant Physiol. 109: 1093-1106 (1995).

Cao YJ, Wei Q, Liao Y, Song HL, Li X, Xiang CB, Kuai BK. Ectopic overexpression of AtHDG11 in tall fescue resulted in enhanced tolerance to drought and salt stress. Plant Cell Rep. 28: 579-588 (2009).

Caparros-Martin JA, Reiland S, Kochert K, Cutanda MC, Culianez-Macia FA. Arabidopsis thaliana AtGpp1 and AtGpp2: two novel low molecular weight phosphatases involved in plant glycerol metabolism. Plant Mol. Biol. 63: 505-517 (2007).

Capel J, Jarillo JA, Salinas J, Martinez-Zapater JM. Two homologous low-temperature-inducible genes from Arabidopsis encode highly hydrophobic proteins. Plant Physiol. 115: 569-576 (1997).

Capella AN, Menossi M, Arruda P, Benedetti CE. COI1 affects myrosinase activity and controls the expression of two flower-specific myrosinase-binding protein homologues in Arabidopsis. Planta 213: 691-699 (2001).

Capodicasa C, Vairo D, Zabotina O, McCartney L, Caprari C, Mattei B, Manfredini C, Aracri B, Benen J, Knox JP, De Lorenzo G, Cervone F. Targeted modification of homogalacturonan by transgenic expression of a fungal polygalacturonase alters plant growth. Plant Physiol. 135: 1294-1304 (2004).

Capron A, Gourgues M, Neiva LS, Faure JE, Berger F, Pagnussat G, Krishnan A, Alvarez-Mejia C, Vielle-Calzada JP, Lee YR, Liu B, Sundaresan V. Maternal control of male-gamete delivery in Arabidopsis involves a putative GPI-anchored protein encoded by the LORELEI gene. Plant Cell 20: 3038-3049 (2008).

Capron A, Okresz L, Genschik P. First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase. Trends Plant Sci. 8: 83-89 (2003).

Capron A, Serralbo O, Fulop K, Frugier F, Parmentier Y, Dong A, Lecureuil A, Guerche P, Kondorosi E, Scheres B, Genschik P. The Arabidopsis anaphase-promoting complex or cyclosome: molecular and genetic characterization of the APC2 subunit. Plant Cell 15: 2370-2382 (2003).

Carey CC, Strahle JT, Selinger DA, Chandler VL. Mutations in the pale aleurone color1 regulatory gene of the Zea mays anthocyanin pathway have distinct phenotypes relative to the functionally similar TRANSPARENT TESTA GLABRA1 gene in Arabidopsis thaliana. Plant Cell 16: 450-464 (2004).

Carey RE, Cosgrove DJ. Portrait of the expansin superfamily in Physcomitrella patens: comparisons with angiosperm expansins. Ann. Bot. (Lond.) 99: 1131-1141 (2007).

Carimi F, Zottini M, Costa A, Cattelan I, De Michele R, Terzi M, Lo Schiavo F. NO signalling in cytokinin-induced programmed cell death. Plant Cell Environ. 28: 1171-1178 (2005).

Carimi F, Zottini M, Formentin E, Terzi M, Lo Schiavo F. Cytokinins: new apoptotic inducers in plants. Planta 216: 413-421 (2003).

Carland FM, Berg BL, FitzGerald JN, Jinamornphongs S, Nelson T, Keith B. Genetic regulation of vascular tissue patterning in Arabidopsis. Plant Cell 11: 2123-2138 (1999).

Carland FM, Fujioka S, Takatsuto S, Yoshida S, Nelson T. The identification of CVP1 reveals a role for sterols in vascular patterning. Plant Cell 14: 2045-2058 (2002).

Carland FM, Nelson T. COTYLEDON VASCULAR PATTERN2-mediated inositol (1,4,5) triphosphate signal transduction Is essential for closed venation patterns of Arabidopsis foliar organs. Plant Cell 16: 1263-1275 (2004).

Carles C, Bies-Etheve N, Aspart L, Leon-Kloosterziel KM, Koornneef M, Echeverria M, Delseny M. Regulation of Arabidopsis thaliana Em genes: role of ABI5. Plant J. 30: 373-383 (2002).

Carlsbecker A, Tandre K, Johanson U, Englund M, Engstrom P. The MADS-box gene DAL1 is a potential mediator of the juvenile-to-adult transition in Norway spruce (Picea abies). Plant J. 40: 546-557 (2004).

Carlson JE, Leebens-Mack JH, Wall PK, Zahn LM, Mueller LA, Landherr LL, Hu Y, Ilut DC, Arrington JM, Choirean S, Becker A, Field D, Tanksley SD, Ma H, Depamphilis CW. EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6000 genes from a basal eudicot. Plant Mol. Biol. 62: 351-369 (2006).

Carmel-Goren L, Liu YS, Lifschitz E, Zamir D. The SELF-PRUNING gene family in tomato. Plant Mol. Biol. 52: 1215-1222 (2003).

Carol P, Peng J, Harberd NP. Isolation and preliminary characterization of gas1-1, a mutation causing partial suppression of the phenotype conferred by the gibberellin-insensitive (gai) mutation in Arabidopsis thaliana (L.) Heyhn. Planta 197: 414-417 (1995).

Carol P, Stevenson D, Bisanz C, Breitenbach J, Sandmann G, Mache R, Coupland G, Kuntz M. Mutations in the Arabidopsis gene IMMUTANS cause a variegated phenotype by inactivating a chloroplast terminal oxidase associated with phytoene desaturation. Plant Cell 11: 57-68 (1999).

Carpaneto A, Ivashikina N, Levchenko V, Krol E, Jeworutzki E, Zhu JK, Hedrich R. Cold transiently activates calcium-permeable channels in Arabidopsis mesophyll cells. Plant Physiol. 143: 487-494 (2007).

Carpenter CD, Kreps JA, Simon AE. Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm. Plant Physiol. 104: 1015-1025 (1994).

Carr SM, Irish VF. Floral homeotic gene expression defines developmental arrest stages in Brassica oleracea L. vars. botrytis and italica. Planta 201: 179-188 (1997).

Carrari F, Coll-Garcia D, Schauer N, Lytovchenko A, Palacios-Rojas N, Balbo I, Rosso M, Fernie AR. Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiol. 137: 70-82 (2005).

Carraro N, Forestan C, Canova S, Traas J, Varotto S. ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize. Plant Physiol. 142: 254-264 (2006).

Carre IA, Kay SA. Multiple DNA-protein complexes at a circadian-regulated promoter element. Plant Cell 7: 2039-2051 (1995).

Carre IA, Kim JY. MYB transcription factors in the Arabidopsis circadian clock. J. Exp. Bot. 53: 1551-1557 (2002).

Carrera E, Holman T, Medhurst A, Dietrich D, Footitt S, Theodoulou FL, Holdsworth MJ. Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis. Plant J. 53: 214-224 (2008).

Carrera E, Holman T, Medhurst A, Peer W, Schmuths H, Footitt S, Theodoulou FL, Holdsworth MJ. Gene expression profiling reveals defined functions of the ABC transporter COMATOSE late in phase II of germination. Plant Physiol. 143: 1669-1679 (2007).

Carretero-Paulet L, Ahumada I, Cunillera N, Rodriguez-Concepcion M, Ferrer A, Boronat A, Campos N. Expression and molecular analysis of the Arabidopsis DXR gene encoding 1-deoxy-D-xylulose 5-phosphate reductoisomerase, the first committed enzyme of the 2-C-methyl-D-erythritol 4-phosphate pathway. Plant Physiol. 129: 1581-1591 (2002).

Carretero-Paulet L, Cairo A, Botella-Pavia P, Besumbes O, Campos N, Boronat A, Rodriguez-Concepcion M. Enhanced flux through the methylerythritol 4-phosphate pathway in Arabidopsis plants overexpressing deoxyxylulose 5-phosphate reductoisomerase. Plant Mol. Biol. 62: 683-695 (2006).

Carrie C, Kuhn K, Murcha MW, Duncan O, Small ID, O'Toole N, Whelan J. Approaches to defining dual-targeted proteins in Arabidopsis. Plant J. 57: 1128-1139 (2009).

Carrie C, Murcha MW, Millar AH, Smith SM, Whelan J. Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Mol. Biol. 63: 97-108 (2007).

Carrier DJ, Abu Bakar NT, Swarup R, Callaghan R, Napier RM, Bennett MJ, Kerr ID. The binding of auxin to the Arabidopsis auxin influx transporter, AUX1. Plant Physiol. 148: 529-535 (2008).

Carrington JC. Small RNAs and Arabidopsis. A fast forward look. Plant Physiol. 138: 565-566 (2005).

Carter C, Pan S, Zouhar J, Avila EL, Girke T, Raikhel NV. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Plant Cell 16: 3285-3303 (2004).

Cartieaux F, Thibaud MC, Zimmerli L, Lessard P, Sarrobert C, David P, Gerbaud A, Robaglia C, Somerville S, Nussaume L. Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance. Plant J. 36: 177-188 (2003).

Carvalho AD, Teodoro CED, Da Cunha M, Okorokova-Facanha AL, Okorokov LA, Fernandes KVS, Gomes VM. Intracellular localization of a lipid transfer protein in Vigna unguiculata seeds. Physiol. Plant. 122: 328-336 (2004).

Carvalho CM, Fontenelle MR, Florentino LH, Santos AA, Zerbini FM, Fontes EP. A novel nucleocytoplasmic traffic GTPase identified as a functional target of the bipartite geminivirus nuclear shuttle protein. Plant J. 55: 869-880 (2008).

Carvalho MF, Turgeon R, Lazarowitz SG. The geminivirus nuclear shuttle protein NSP inhibits the activity of AtNSI, a vascular-expressed Arabidopsis acetyltransferase regulated with the sink-to-source transition. Plant Physiol. 140: 1317-1330 (2006).

Cary AJ, Che P, Howell SH. Developmental events and shoot apical meristem gene expression patterns during shoot development in Arabidopsis thaliana. Plant J. 32: 867-877 (2002).

Cary AJ, Liu W, Howell SH. Cytokinin action is coupled to ethylene in its effects on the inhibition of root and hypocotyl elongation in Arabidopsis thaliana seedlings. Plant Physiol. 107: 1075-1082 (1995).

Caryl AP, Jones GH, Franklin FC. Dissecting plant meiosis using Arabidopsis thaliana mutants. J. Exp. Bot. 54: 25-38 (2003).

Casado A, Caballero JL, Franco AR, Cardenas J, Grant MR, Munoz-Blanco J. Molecular cloning of the gene encoding the L-asparaginase gene of Arabidopsis thaliana. Plant Physiol. 108: 1321-1322 (1995).

Casal JJ. Phytochrome A enhances the promotion of hypocotyl growth caused by reductions in levels of phytochrome B in its far-red-light-absorbing form in light-grown Arabidopsis thaliana. Plant Physiol. 112: 965-973 (1996).

Casal JJ. Coupling of phytochrome B to the control of hypocotyl growth in Arabidopsis. Planta 196: 23-29 (1995).

Casal JJ, Boccalandro H. Co-action between phytochrome B and HY4 in Arabidopsis thaliana. Planta 197: 213-218 (1995).

Casal JJ, Cerdan PD, Staneloni RJ, Cattaneo L. Different phototransduction kinetics of phytochrome A and phytochrome B in Arabidopsis thaliana. Plant Physiol. 116: 1533-1538 (1998).

Casal JJ, Davis SJ, Kirchenbauer D, Viczian A, Yanovsky MJ, Clough RC, Kircher S, Jordan-Beebe ET, Schafer E, Nagy F, Vierstra RD. The serine-rich N-terminal domain of oat phytochrome a helps regulate light responses and subnuclear localization of the photoreceptor. Plant Physiol. 129: 1127-1137 (2002).

Casal JJ, Mazzella MA. Conditional synergism between cryptochrome 1 and phytochrome B is shown by the analysis of phyA, phyB, and hy4 simple, double, and triple mutants in Arabidopsis. Plant Physiol. 118: 19-25 (1998).

Casas-Mollano JA, Lao NT, Kavanagh TA. Intron-regulated expression of SUVH3, an Arabidopsis Su(var)3-9 homologue. J. Exp. Bot. 57: 3301-3311 (2006).

Casazza AP, Basner A, Hofgen R, Hesse H. Expression of threonine synthase from Solanum tuberosum L. is not metabolically regulated by photosynthesis-related signals or by nitrogenous compounds. Plant Sci. 157: 43-50 (2000).

Casazza AP, Rossini S, Rosso MG, Soave C. Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana. Plant Mol. Biol. 58: 41-51 (2005).

Casimiro I, Beeckman T, Graham N, Bhalerao R, Zhang H, Casero P, Sandberg G, Bennett MJ. Dissecting Arabidopsis lateral root development. Trends Plant Sci. 8: 165-171 (2003).

Cassin G, Mari S, Curie C, Briat JF, Czernic P. Increased sensitivity to iron deficiency in Arabidopsis thaliana overaccumulating nicotianamine. J. Exp. Bot. 60: 1249-1259 (2009).

Casson S, Spencer M, Walker K, Lindsey K. Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. Plant J. 42: 111-123 (2005).

Casson SA, Lindsey K. The turnip mutant of Arabidopsis reveals that LEAFY COTYLEDON1 expression mediates the effects of auxin and sugars to promote embryonic cell identity. Plant Physiol. 142: 526-541 (2006).

Casson SA, Topping JF, Lindsey K. MERISTEM-DEFECTIVE, an RS domain protein, is required for correct meristem patterning and function in Arabidopsis. Plant J. 57: 857-869 (2009).

Castells E, Casacuberta JM. Signalling through kinase-defective domains: the prevalence of atypical receptor-like kinases in plants. J. Exp. Bot. 58: 3503-3511 (2007).

Castells E, Puigdomenech P, Casacuberta JM. Regulation of the kinase activity of the MIK GCK-like MAP4K by alternative splicing. Plant Mol. Biol. 61: 747-756 (2006).

Castillejo C, Romera-Branchat M, Pelaz S. A new role of the Arabidopsis SEPALLATA3 gene revealed by its constitutive expression. Plant J. 43: 586-596 (2005).

Castillo MC, Leon J. Expression of the beta-oxidation gene 3-ketoacyl-CoA thiolase 2 (KAT2) is required for the timely onset of natural and dark-induced leaf senescence in Arabidopsis. J. Exp. Bot. 59: 2171-2179 (2008).

Castillo MC, Martinez C, Buchala A, Metraux JP, Leon J. Gene-specific involvement of {beta}-oxidation in wound-activated responses in Arabidopsis. Plant Physiol. 135: 85-94 (2004).

Castle J, Szekeres M, Jenkins G, Bishop GJ. Unique and overlapping expression patterns of Arabidopsis CYP85 genes involved in brassinosteroid C-6 oxidation. Plant Mol. Biol. 57: 129-140 (2005).

Castle LA, Siehl DL, Gorton R, Patten PA, Chen YH, Bertain S, Cho HJ, Duck N, Wong J, Liu D, Lassner MW. Discovery and directed evolution of a glyphosate tolerance gene. Science 304: 1151-1154 (2004).

Catala R, Santos E, Alonso JM, Ecker JR, Martinez-Zapater JM, Salinas J. Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis. Plant Cell 15: 2940-2951 (2003).

Catalano CM, Czymmek KJ, Gann JG, Sherrier DJ. Medicago truncatula syntaxin SYP132 defines the symbiosome membrane and infection droplet membrane in root nodules. Planta 225: 541-550 (2007).

Catarecha P, Segura MD, Franco-Zorrilla JM, Garcia-Ponce B, Lanza M, Solano R, Paz-Ares J, Leyva A. A mutant of the Arabidopsis phosphate transporter PHT1;1 displays enhanced arsenic accumulation. Plant Cell 19: 1123-1133 (2007).

Causier B, Bradley D, Cook H, Davies B. Conserved intragenic elements were critical for the evolution of the floral C-function. Plant J. Nov 28 [Epub ahead of print] (2008).

Cavalier DM, Lerouxel O, Neumetzler L, Yamauchi K, Reinecke A, Freshour G, Zabotina OA, Hahn MG, Burgert I, Pauly M, Raikhel NV, Keegstra K. Disrupting two Arabidopsis thaliana xylosyltransferase genes results in plants deficient in xyloglucan, a major primary cell wall component. Plant Cell 20: 1519-1537 (2008).

Cazzonelli CI, Cuttriss AJ, Cossetto SB, Pye W, Crisp P, Whelan J, Finnegan EJ, Turnbull C, Pogson BJ. Regulation of carotenoid composition and shoot branching in Arabidopsis by a chromatin modifying histone methyltransferase, SDG8. Plant Cell 21: 39-53 (2009).

Cecchetti V, Altamura MM, Falasca G, Costantino P, Cardarelli M. Auxin regulates Arabidopsis anther dehiscence, pollen maturation, and filament elongation. Plant Cell 20: 1760-1774 (2008).

Cecchetti V, Pomponi M, Altamura MM, Pezzotti M, Marsilio S, D'Angeli S, Tornielli GB, Costantino P, Cardarelli M. Expression of rolB in tobacco flowers affects the coordinated processes of anther dehiscence and style elongation. Plant J. 38: 512-525 (2004).

Cedzich A, Stransky H, Schulz B, Frommer WB. Characterization of cytokinin and adenine transport in Arabidopsis cell cultures. Plant Physiol. 148: 1857-1867 (2008).

Celenza JL, Quiel JA, Smolen GA, Merrikh H, Silvestro AR, Normanly J, Bender J. The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis. Plant Physiol. 137: 253-262 (2005).

Cellier F, Conejero G, Ricaud L, Luu DT, Lepetit M, Gosti F, Casse F. Characterization of AtCHX17, a member of the cation/H exchangers, CHX family, from Arabidopsis thaliana suggests a role in K homeostasis. Plant J. 39: 834-846 (2004).

Centis-Aubay S, Gasset G, Mazars C, Ranjeva R, Graziana A. Changes in gravitational forces induce modifications of gene expression in A. thaliana seedlings. Planta 218: 179-185 (2003).

Cerdan PD, Staneloni RJ, Ortega J, Bunge MM, Rodriguez-Batiller MJ, Sanchez RA, Casal JJ. Sustained but not transient phytochrome A signaling targets a region of an Lhcb1*2 promoter not necessary for phytochrome B action. Plant Cell 12: 1203-1212 (2000).

Cerezo M, Tillard P, Filleur S, Munos S, Daniel-Vedele F, Gojon A. Major alterations of the regulation of root NO(3)(-) uptake are associated with the mutation of Nrt2.1 and Nrt2.2 genes in Arabidopsis. Plant Physiol. 127: 262-271 (2001).

Cernac A, Andre C, Hoffmann-Benning S, Benning C. WRI1 is required for seed germination and seedling establishment. Plant Physiol. 141: 745-757 (2006).

Cernac A, Benning C. WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis. Plant J. 40: 575-585 (2004).

Cerovic ZG, Ounis A, Cartelat A, Latouche G, Goulas Y, Meyer S, Moya I. The use of chlorophyll fluorescence excitation spectra for the non-destructive in situ assessment of UV-absorbing compounds in leaves. Plant Cell Environ. 25: 1663-1676 (2002).

Ceserani T, Trofka A, Gandotra N, Nelson T. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Plant J. 57: 1000-1014 (2009).

Cha S, Zhang H, Ilarslan HI, Wurtele ES, Brachova L, Nikolau BJ, Yeung ES. Direct profiling and imaging of plant metabolites in intact tissues by using colloidal graphite-assisted laser desorption ionization (GALDI) mass spectrometry. Plant J. 55: 348-360 (2008).

Chaabouni S, Jones B, Delalande C, Wang H, Li Z, Mila I, Frasse P, Latche A, Pech JC, Bouzayen M. Sl-IAA3, a tomato Aux/IAA at the crossroads of auxin and ethylene signalling involved in differential growth. J. Exp. Bot. 60: 1349-1362 (2009).

Chaal BK, Ishida K, Green BR. A thylakoidal processing peptidase from the heterokont alga Heterosigma akashiwo. Plant Mol. Biol. 52: 463-472 (2003).

Chae HJ, Ke N, Kim HR, Chen S, Godzik A, Dickman M, Reed JC. Evolutionarily conserved cytoprotection provided by Bax Inhibitor-1 homologs from animals, plants, and yeast. Gene 323: 101-113 (2003).

Chae HS, Faure F, Kieber JJ. The eto1, eto2, and eto3 mutations and cytokinin treatment increase ethylene biosynthesis in Arabidopsis by increasing the stability of ACS protein. Plant Cell 15: 545-559 (2003).

Chae HS, Kieber JJ. Eto Brute? Role of ACS turnover in regulating ethylene biosynthesis. Trends Plant Sci. 10: 291-296 (2005).

Chai MF, Chen QJ, An R, Chen YM, Chen J, Wang XC. NADK2, an Arabidopsis chloroplastic NAD kinase, plays a vital role in both chlorophyll synthesis and chloroplast protection. Plant Mol. Biol. 59: 553-564 (2005).

Chai MF, Wei PC, Chen QJ, An R, Chen J, Yang S, Wang XC. NADK3, a novel cytoplasmic source of NADPH, is required under conditions of oxidative stress and modulates abscisic acid responses in Arabidopsis. Plant J. 47: 665-674 (2006).

Chaiwongsar S, Otegui MS, Jester PJ, Monson SS, Krysan PJ. The protein kinase genes MAP3K epsilon 1 and MAP3K epsilon 2 are required for pollen viability in Arabidopsis thaliana. Plant J. 48: 193-205 (2006).

Chak RK, Thomas TL, Quatrano RS, Rock CD. The genes ABI1 and ABI2 are involved in abscisic acid- and drought-inducible expression of the Daucus carota L. Dc3 promoter in guard cells of transgenic Arabidopsis thaliana (L.) Heynh. Planta 210: 875-883 (2000).

Chakravarthy S, Tuori RP, D'Ascenzo MD, Fobert PR, Despres C, Martin GB. The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis elements. Plant Cell 15: 3033-3050 (2003).

Chan CS, Guo L, Shih MC. Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana. Plant Mol. Biol. 46: 131-141 (2001).

Chan CS, Peng HP, Shih MC. Mutations affecting light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Plant Physiol. 130: 1476-1486 (2002).

Chan J, Calder G, Fox S, Lloyd C. Localization of the microtubule end binding protein EB1 reveals alternative pathways of spindle development in Arabidopsis suspension cells. Plant Cell 17: 1737-1748 (2005).

Chan J, Peter Pauls K. Brassica napus Rop GTPases and their expression in microspore cultures. Planta 225: 469-484 (2007).

Chan SY, Appling DR. Regulation of S-adenosylmethionine levels in Saccharomyces cerevisiae. J. Biol. Chem. 278: 43051-43059 (2003).

Chan YL, Prasad V, Sanjaya, Chen KH, Liu PC, Chan MT, Cheng CP. Transgenic tomato plants expressing an Arabidopsis thionin (Thi2.1) driven by fruit-inactive promoter battle against phytopathogenic attack. Planta 221: 386-393 (2005).

Chanda B, Venugopal SC, Kulshrestha S, Navarre DA, Downie B, Vaillancourt L, Kachroo A, Kachroo P. Glycerol-3-phosphate levels are associated with basal resistance to the hemibiotrophic fungus Colletotrichum higginsianum in Arabidopsis. Plant Physiol. 147: 2017-2029 (2008).

Chandler J, Wilson A, Dean C. Arabidopsis mutants showing an altered response to vernalization. Plant J. 10: 637-644 (1996).

Chandler JW. Cotyledon organogenesis. J. Exp. Bot. 59: 2917-2931 (2008).

Chandler JW, Bartels D. Structure and function of the vp1 gene homologue from the resurrection plant Craterostigma plantagineum Hochst. Mol. Gen. Genet. 256: 539-546 (1997).

Chandler JW, Melzer S. An alpha-crystallin gene, ACD31.2 from Arabidopsis is negatively regulated by FPF1 overexpression, floral induction, gibberellins, and long days. J. Exp. Bot. 55: 1433-1435 (2004).

Chandler PM, Marion-Poll A, Ellis M, Gubler F. Mutants at the Slender1 locus of barley cv Himalaya. Molecular and physiological characterization. Plant Physiol. 129: 181-190 (2002).

Chandra A, Upadhyaya KC. Structure and organization of a novel calmodulin gene of Arabidopsis thaliana. Cell Mol. Biol. Res. 39: 509-516 (1993).

Chandra-Shekara AC, Gupte M, Navarre D, Raina S, Raina R, Klessig D, Kachroo P. Light-dependent hypersensitive response and resistance signaling against Turnip Crinkle Virus in Arabidopsis. Plant J. 45: 320-334 (2006).

Chandra-Shekara AC, Navarre D, Kachroo A, Kang HG, Klessig D, Kachroo P. Signaling requirements and role of salicylic acid in HRT- and rrt-mediated resistance to turnip crinkle virus in Arabidopsis. Plant J. 40: 647-659 (2004).

Chandran D, Tai YC, Hather G, Dewdney J, Denoux C, Burgess DG, Ausubel FM, Speed TP, Wildermuth MC. Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis. Plant Physiol. 149: 1435-1451 (2009).

Chandrasekharan MB, Bishop KJ, Hall TC. Module-specific regulation of the beta-phaseolin promoter during embryogenesis. Plant J. 33: 853-866 (2003).

Chaney RL, Malik M, Li YM, Brown SL, Brewer EP, Angle JS, Baker AJ. Phytoremediation of soil metals. Curr. Opin. Biotechnol. 8: 279-284 (1997).

Chang A, Lim MH, Lee SW, Robb J, Nazar RN. Tomato PAL gene family: highly redundant but strongly underutilized. J. Biol. Chem. 283: 33591-33601 (2008).

Chang AK, Duggleby RG. Expression, purification and characterization of Arabidopsis thaliana acetohydroxyacid synthase. Biochem. J. 327: 161-169 (1997).

Chang AK, Duggleby RG. Herbicide-resistant forms of Arabidopsis thaliana acetohydroxyacid synthase: characterization of the catalytic properties and sensitivity to inhibitors of four defined mutants. Biochem. J. 333: 765-777 (1998).

Chang C, Meyerowitz EM. Molecular cloning and DNA sequence of the Arabidopsis thaliana alcohol dehydrogenase gene. Proc. Natl. Acad. Sci. U.S.A. 83: 1408-1412 (1986).

Chang CC, Ball L, Fryer MJ, Baker NR, Karpinski S, Mullineaux PM. Induction of ASCORBATE PEROXIDASE 2 expression in wounded Arabidopsis leaves does not involve known wound-signalling pathways but is associated with changes in photosynthesis. Plant J. 38: 499-511 (2004).

Chang CC, Slesak I, Jorda L, Sotnikov A, Melzer M, Miszalski Z, Mullineaux PM, Parker JE, Karpinska B, Karpinski S. Arabidopsis chloroplastic glutathione peroxidases play a role in cross talk between photooxidative stress and immune responses. Plant Physiol. 150: 670-83 (2009).

Chang CS, Li YH, Chen LT, Chen WC, Hsieh WP, Shin J, Jane WN, Chou SJ, Choi G, Hu JM, Somerville S, Wu SH. LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation. Plant J. 54: 205-219 (2008).

Chang CW, Moseley JL, Wykoff D, Grossman AR. The LPB1 gene is important for acclimation of Chlamydomonas reinhardtii to phosphorus and sulfur deprivation. Plant Physiol. 138: 319-329 (2005).

Chang CW, Sun TP. Characterization of cis-regulatory regions responsible for developmental regulation of the gibberellin biosynthetic gene GA1 in Arabidopsis thaliana. Plant Mol. Biol. 49: 579-589 (2002).

Chang HC, Bush DR. Topology of NAT2, a prototypical example of a new family of amino acid transporters. J. Biol. Chem. 272: 30552-30557 28 (1997).

Chang IF, Curran A, Woolsey R, Quilici D, Cushman JC, Mittler R, Harmon A, Harper JF. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Proteomics 9: 2967-2985 (2009).

Chang IF, Szick-Miranda K, Pan S, Bailey-Serres J. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol. 137: 848-862 (2005).

Chang M, Wang B, Chen X, Wu R. Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-c expression in rice. Plant Mol. Biol. 39: 105-115 (1999).

Chang SC, Kim YS, Lee JY, Kaufman PB, Kirakosyan A, Yun HS, Kim TW, Kim SY, Cho MH, Lee JS, Kim SK. Brassinolide interacts with auxin and ethylene in the root gravitropic response of maize (Zea mays). Physiol. Plant. 121: 666-673 (2004).

Chao Q, Rothenberg M, Solano R, Roman G, Terzaghi W, Ecker JR. Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins. Cell 89: 1133-1144 (1997).

Chapple CC. A cDNA encoding a novel cytochrome P450-dependent monooxygenase from Arabidopsis thaliana. Plant Physiol. 108: 875-876 (1995).

Chapple CC, Vogt T, Ellis BE, Somerville CR. An Arabidopsis mutant defective in the general phenylpropanoid pathway. Plant Cell 4: 1413-1424 (1992).

Charlton WL, Matsui K, Johnson B, Graham IA, Ohme-Takagi M, Baker A. Salt-induced expression of peroxisome-associated genes requires components of the ethylene, jasmonate and abscisic acid signalling pathways. Plant Cell Environ. 28: 513-524 (2005).

Charng YY, Liu HC, Liu NY, Chi WT, Wang CN, Chang SH, Wang TT. A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol. 143: 251-262 (2007).

Charng YY, Liu HC, Liu NY, Hsu FC, Ko SS. Arabidopsis Hsa32, a novel heat shock protein, is essential for acquired thermotolerance during long recovery after acclimation. Plant Physiol. 140: 1297-1305 (2006).

Charrier B, Champion A, Henry Y, Kreis M. Expression profiling of the whole Arabidopsis shaggy-like kinase multigene family by real-time reverse transcriptase-polymerase chain reaction. Plant Physiol. 130: 577-590 (2002).

Chassin Y, Kapri-Pardes E, Sinvany G, Arad T, Adam Z. Expression and characterization of the thylakoid lumen protease DegP1 from Arabidopsis. Plant Physiol. 130: 857-864 (2002).

Chassot C, Buchala A, Schoonbeek HJ, Metraux JP, Lamotte O. Wounding of Arabidopsis leaves causes a powerful but transient protection against Botrytis infection. Plant J. 55: 555-567 (2008).

Chassot C, Nawrath C, Métraux JP. Cuticular defects lead to full immunity to a major plant pathogen. Plant J. 49: 972-980 (2007).

Chastain CJ, Xu W, Parsley K, Sarath G, Hibberd JM, Chollet R. The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis possess a novel, unprecedented Ser/Thr protein kinase primary structure. Plant J. 53: 854-863 (2008).

Chatelet P, Laucou V, Fernandez L, Sreekantan L, Lacombe T, Martinez-Zapater JM, Thomas MR, Torregrosa L. Characterization of Vitis vinifera L. somatic variants exhibiting abnormal flower development patterns. J. Exp. Bot. 58: 4107-4118 (2007).

Chatfield SP, Raizada MN. Ethylene and shoot regeneration: hookless1 modulates de novo shoot organogenesis in Arabidopsis thaliana. Plant Cell Rep. 27: 655-666 (2008).

Chatre L, Brandizzi F, Hocquellet A, Hawes C, Moreau P. Sec22 and Memb11 are v-SNAREs of the anterograde endoplasmic reticulum-Golgi pathway in tobacco leaf epidermal cells. Plant Physiol. 139: 1244-1254 (2005).

Chatterjee M, Sharma P, Khurana JP. Cryptochrome 1 from Brassica napus is up-regulated by blue light and controls hypocotyl/stem growth and anthocyanin accumulation. Plant Physiol. 141: 61-74 (2006).

Chattopadhyay S, Ang LH, Puente P, Deng XW, Wei N. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. Plant Cell 10: 673-683 (1998).

Chaturvedi R, Krothapalli K, Makandar R, Nandi A, Sparks AA, Roth MR, Welti R, Shah J. Plastid omega3-fatty acid desaturase-dependent accumulation of a systemic acquired resistance inducing activity in petiole exudates of Arabidopsis thaliana is independent of jasmonic acid. Plant J. 54: 106-117 (2008).

Chaudhuri B, Hormann F, Lalonde S, Brady SM, Orlando DA, Benfey P, Frommer WB. Protonophore- and pH-insensitive glucose and sucrose accumulation detected by FRET nanosensors in Arabidopsis root tips. Plant J. 56: 948-962 (2008).

Chauhan S, Forsthoefel N, Ran Y, Quigley F, Nelson DE, Bohnert HJ. Na+/myo-inositol symporters and Na+/H+-antiport in Mesembryanthemum crystallinum. Plant J. 24: 511-522 (2000).

Chaumont F, Barrieu F, Herman EM, Chrispeels MJ. Characterization of a maize tonoplast aquaporin expressed in zones of cell division and elongation. Plant Physiol. 117: 1143-1152 (1998).

Chaumont F, Barrieu F, Jung R, Chrispeels MJ. Plasma membrane intrinsic proteins from maize cluster in two sequence subgroups with differential aquaporin activity. Plant Physiol. 122: 1025-1034 (2000).

Chawade A, Brautigam M, Lindlof A, Olsson O, Olsson B. Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors. BMC Genomics 8: 304 (2007).

Chawla R, Nicholson SJ, Folta KM, Srivastava V. Transgene-induced silencing of Arabidopsis phytochrome A gene via exonic methylation. Plant J. 52: 1105-1118 (2007).

Che P, Gingerich DJ, Lall S, Howell SH. Global and hormone-induced gene expression changes during shoot development in Arabidopsis. Plant Cell 14: 2771-2785 (2002).

Che P, Lall S, Howell SH. Developmental steps in acquiring competence for shoot development in Arabidopsis tissue culture. Planta 226: 1183-1194 (2007).

Che P, Lall S, Nettleton D, Howell SH. Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol. 141: 620-637 (2006).

Che P, Weaver LM, Wurtele ES, Nikolau BJ. The role of biotin in regulating 3-methylcrotonyl-coenzyme a carboxylase expression in Arabidopsis. Plant Physiol. 131: 1479-1486 (2003).

Che P, Wurtele ES, Nikolau BJ. Metabolic and environmental regulation of 3-methylcrotonyl-coenzyme A carboxylase expression in Arabidopsis. Plant Physiol. 129: 625-637 (2002).

Chehab EW, Patharkar OR, Cushman JC. Isolation and characterization of a novel v-SNARE family protein that interacts with a calcium-dependent protein kinase from the common ice plant, Mesembryanthemum crystallinum. Planta 225: 783-799 (2007).

Chehab EW, Raman G, Walley JW, Perea JV, Banu G, Theg S, Dehesh K. Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis. Plant Physiol. 141: 121-134 (2006).

Chen A, Komives EA, Schroeder JI. An improved grafting technique for mature Arabidopsis plants demonstrates long-distance shoot-to-root transport of phytochelatins in Arabidopsis. Plant Physiol. 141: 108-120 (2006).

Chen C, Chen Z. Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor. Plant Physiol. 129: 706-716 (2002).

Chen C, Zhang W, Timofejeva L, Gerardin Y, Ma H. The Arabidopsis ROCK-N-ROLLERS gene encodes a homolog of the yeast ATP-dependent DNA helicase MER3 and is required for normal meiotic crossover formation. Plant J. 43: 321-334 (2005).

Chen CC, Liang CS, Kao AL, Yang CC. HHP1 is involved in osmotic stress sensitivity in Arabidopsis. J. Exp. Bot. 60: 1589-1604 (2009).

Chen CN, Chen HR, Yeh SY, Vittore G, Ho TH. Autophagy is enhanced and floral development is impaired in AtHVA22d RNA interference Arabidopsis. Plant Physiol. 149: 1679-1689 (2009).

Chen CN, Chu CC, Zentella R, Pan SM, Ho TH. AtHVA22 gene family in Arabidopsis: phylogenetic relationship, ABA and stress regulation, and tissue-specific expression. Plant Mol. Biol. 49: 633-644 (2002).

Chen CT, Chen LM, Lin CC, Kao CH. Regulation of proline accumulation in detached rice leaves exposed to excess copper. Plant Sci. 160: 283-290 (2001).

Chen DL, Delatorre CA, Bakker A, Abel S. Conditional identification of phosphate-starvation-response mutants in Arabidopsis thaliana. Planta 211: 13-22 (2000).

Chen F, D'Auria JC, Tholl D, Ross JR, Gershenzon J, Noel JP, Pichersky E. An Arabidopsis thaliana gene for methylsalicylate biosynthesis, identified by a biochemical genomics approach, has a role in defense. Plant J. 36: 577-588 (2003).

Chen F, Ro DK, Petri J, Gershenzon J, Bohlmann J, Pichersky E, Tholl D. Characterization of a root-specific Arabidopsis terpene synthase responsible for the formation of the volatile monoterpene 1,8-cineole. Plant Physiol. 135: 1956-1966 (2004).

Chen F, Tholl D, D'Auria JC, Farooq A, Pichersky E, Gershenzon J. Biosynthesis and emission of terpenoid volatiles from Arabidopsis flowers. Plant Cell 15: 481-494 (2003).

Chen G, Alexander L, Grierson D. Constitutive expression of EIL-like transcription factor partially restores ripening in the ethylene-insensitive Nr tomato mutant. J. Exp. Bot. 55: 1491-1497 (2004).

Chen G, Bi YR, Li N. EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development. Plant J. 41: 364-375 (2005).

Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW. Arabidopsis CULLIN4 forms an E3 ubiquitin ligase with RBX1 and the CDD complex in mediating light control of development. Plant Cell 18: 1991-2004 (2006).

Chen H, Xiong L. Pyridoxine is required for post-embryonic root development and tolerance to osmotic and oxidative stresses. Plant J. 44: 396-408 (2005).

Chen H, Xiong L. The short-rooted vitamin B6-deficient mutant pdx1 has impaired local auxin biosynthesis. Planta 229: 1303-1310 (2009).

Chen H, Zhang D, Guo J, Wu H, Jin M, Lu Q, Lu C, Zhang L. A Psb27 homologue in Arabidopsis thaliana is required for efficient repair of photodamaged photosystem II. Plant Mol. Biol. 61: 567-575 (2006).

Chen HC, Yokthongwattana K, Newton AJ, Melis A. SulP, a nuclear gene encoding a putative chloroplast-targeted sulfate permease in Chlamydomonas reinhardtii. Planta 218: 98-106 (2003).

Chen IP, Haehnel U, Altschmied L, Schubert I, Puchta H. The transcriptional response of Arabidopsis to genotoxic stress - a high-density colony array study (HDCA). Plant J. 35: 771-786 (2003).

Chen J, Burke JJ, Velten J, Xin Z. FtsH11 protease plays a critical role in Arabidopsis thermotolerance. Plant J. 48: 73-84 (2006).

Chen J, Li WX, Xie D, Peng JR, Ding SW. Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microRNA in host gene expression. Plant Cell 16: 1302-1313 (2004).

Chen JG, Gao Y, Jones AM. Differential roles of Arabidopsis heterotrimeric G-protein subunits in modulating cell division in roots. Plant Physiol. 141: 887-897 (2006).

Chen JG, Pandey S, Huang J, Alonso JM, Ecker JR, Assmann SM, Jones AM. GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiol. 135: 907-915 (2004).

Chen JG, Ullah H, Temple B, Liang J, Guo J, Alonso JM, Ecker JR, Jones AM. RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis. J. Exp. Bot. 57: 2697-2708 (2006).

Chen K, Du L, Chen Z. Sensitization of defense responses and activation of programmed cell death by a pathogen-induced receptor-like protein kinase in Arabidopsis. Plant Mol. Biol. 53: 61-74 (2003).

Chen L, Bush DR. LHT1, a lysine- and histidine-specific amino acid transporter in Arabidopsis. Plant Physiol. 115: 1127-1134 (1997).

Chen L, Carpita NC, Reiter WD, Wilson RH, Jeffries C, McCann MC. A rapid method to screen for cell-wall mutants using discriminant analysis of Fourier transform infrared spectra. Plant J. 16: 385-392 (1998).

Chen L, Ortiz-Lopez A, Jung A, Bush DR. ANT1, an aromatic and neutral amino acid transporter in Arabidopsis. Plant Physiol. 125: 1813-1820 (2001).

Chen LM, Li KZ, Miwa T, Izui K. Overexpression of a cyanobacterial phosphoenolpyruvate carboxylase with diminished sensitivity to feedback inhibition in Arabidopsis changes amino acid metabolism. Planta 219: 440-449 (2004).

Chen M. Phytochrome nuclear body: an emerging model to study interphase nuclear dynamics and signaling. Curr. Opin. Plant Biol. 11: 503-508 (2008).

Chen M, Markham JE, Dietrich CR, Jaworski JG, Cahoon EB. Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis. Plant Cell 20: 1862-1878 (2008).

Chen M, Mooney BP, Hajduch M, Joshi T, Zhou M, Xu D, Thelen JJ. System analysis of an Arabidopsis mutant altered in de novo fatty acid synthesis reveals diverse changes in seed composition and metabolism. Plant Physiol. 150: 27-41 (2009).

Chen M, Xu Z, Xia L, Li L, Cheng X, Dong J, Wang Q, Ma Y. Cold-induced modulation and functional analyses of the DRE-binding transcription factor gene, GmDREB3, in soybean (Glycine max L.). J. Exp. Bot. 60: 121-135 (2009).

Chen MK, Lin IC, Yang CH. Functional analysis of three lily (Lilium longiflorum) APETALA1-like MADS box genes in regulating floral transition and formation. Plant Cell Physiol. 49: 704-717 (2008).

Chen PY, Lee KT, Chi WC, Hirt H, Chang CC, Huang HJ. Possible involvement of MAP kinase pathways in acquired metal-tolerance induced by heat in plants. Planta 228: 499-509 (2008).

Chen QF, Xiao S, Chye ML. Overexpression of the Arabidopsis 10-kD acyl-CoA-binding protein, ACBP6, enhances freezing tolerance. Plant Physiol. 148: 304-315 (2008).

Chen QG, Bleecker AB. Analysis of ethylene signal-transduction kinetics associated with seedling-growth response and chitinase induction in wild-type and mutant Arabidopsis. Plant Physiol. 108: 597-607 (1995).

Chen RM, Ni ZF, Nie XL, Qin YX, Dong GQ, Sun QX. Isolation and characterization of genes encoding Myb transcription factor in wheat (Triticum aestivem L.). Plant Sci. 169: 1146-1154 (2005).

Chen S, Glawischnig E, Jorgensen K, Naur P, Jorgensen B, Olsen CE, Hansen CH, Rasmussen H, Pickett JA, Halkier BA. CYP79F1 and CYP79F2 have distinct functions in the biosynthesis of aliphatic glucosinolates in Arabidopsis. Plant J. 33: 923-937 (2003).

Chen S, Jin W, Wang M, Zhang F, Zhou J, Jia Q, Wu Y, Liu F, Wu P. Distribution and characterization of over 1000 T-DNA tags in rice genome. Plant J. 36: 105-113 (2003).

Chen S, Petersen BL, Olsen CE, Schulz A, Halkier BA. Long-distance phloem transport of glucosinolates in Arabidopsis. Plant Physiol. 127: 194-201 (2001).

Chen TH, Murata N. Enhancement of tolerance of abiotic stress by metabolic engineering of betaines and other compatible solutes. Curr. Opin. Plant Biol. 5: 250-257 (2002).

Chen W, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T, Mauch F, Luan S, Zou G, Whitham SA, Budworth PR, Tao Y, Xie Z, Chen X, Lam S, Kreps JA, Harper JF, Si-Ammour A, Mauch-Mani B, Heinlein M, Kobayashi K, Hohn T, Dangl JL, Wang X, Zhu T. Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell 14: 559-574 (2002).

Chen WP, Li PH. Membrane stabilization by abscisic acid under cold aids proline in alleviating chilling injury in maize (Zea mays L.) cultured cells. Plant Cell Environ. 25: 955-962 (2002).

Chen X. MicroRNA biogenesis and function in plants. FEBS Lett. 579: 5923-5931 (2005).

Chen X, Goodwin SM, Boroff VL, Liu X, Jenks MA. Cloning and characterization of the WAX2 gene of Arabidopsis involved in cuticle membrane and wax production. Plant Cell 15: 1170-1185 (2003).

Chen X, Goodwin SM, Liu X, Chen X, Bressan RA, Jenks MA. Mutation of the RESURRECTION1 locus of Arabidopsis reveals an association of cuticular wax with embryo development. Plant Physiol. 139: 909-919 (2005).

Chen X, Smith MD, Fitzpatrick L, Schnell DJ. In vivo analysis of the role of atTic20 in protein import into chloroplasts. Plant Cell 14: 641-654 (2002).

Chen XY, Liu L, Lee E, Han X, Rim Y, Chu H, Kim SW, Sack F, Kim JY. The Arabidopsis callose synthase gene GSL8 is required for cytokinesis and cell patterning. Plant Physiol. 150: 105-113 (2009).

Chen Y, Asano T, Fujiwara MT, Yoshida S, Machida Y, Yoshioka Y. Plant cells without detectable plastids are generated in the crumpled leaf mutant of Arabidopsis thaliana. Plant Cell Physiol. 50: 956-969 (2009).

Chen Y, Ji F, Xie H, Liang J. Overexpression of the regulator of G-protein signalling protein enhances ABA-mediated inhibition of root elongation and drought tolerance in Arabidopsis. J. Exp. Bot. 57: 2101-2110 (2006).

Chen Y, Ji F, Xie H, Liang J, Zhang J. The regulator of G-protein signaling proteins involved in sugar and abscisic acid signaling in Arabidopsis seed germination. Plant Physiol. 140: 302-310 (2006).

Chen YC, Tseng BW, Huang YL, Liu YC, Jeng ST. Expression of the ipomoelin gene from sweet potato is regulated by dephosphorylated proteins, calcium ion and ethylene. Plant Cell Environ. 26: 1373-1383 (2003).

Chen YH, Wu XM, Ling HQ, Yang WC. Transgenic expression of DwMYB2 impairs iron transport from root to shoot in Arabidopsis thaliana. Cell. Res. 16: 830-840 (2006).

Chen YL, Huang R, Xiao YM, Lu P, Chen J, Wang XC. Extracellular calmodulin-induced stomatal closure is mediated by heterotrimeric G protein and H2O2. Plant Physiol. 136: 4096-4103 (2004).

Chen YM, Ferrar TS, Lohmeir-Vogel EM, Morrice N, Mizuno Y, Berenger B, Ng KK, Muench DG, Moorhead GB. The PII signal transduction protein of Arabidopsis thaliana forms an arginine regulated complex with plastid N-acetyl glutamate kinase. J. Biol. Chem. 281: 5726-5733 (2006).

Chen YN, Slabaugh E, Brandizzi F. Membrane-tethered transcription factors in Arabidopsis thaliana: novel regulators in stress response and development. Curr. Opin. Plant Biol. 11: 695-701 (2008).

Chen Z, Hartmann HA, Wu MJ, Friedman EJ, Chen JG, Pulley M, Schulze-Lefert P, Panstruga R, Jones AM. Expression analysis of the AtMLO gene family encoding plant-specific seven-transmembrane domain proteins. Plant Mol. Biol. 60: 583-597 (2006).

Chen Z, Hong X, Zhang H, Wang Y, Li X, Zhu JK, Gong Z. Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. Plant J. 43: 273-283 (2005).

Chen Z, Kloek AP, Cuzick A, Moeder W, Tang D, Innes RW, Klessig DF, McDowell JM, Kunkel BN. The Pseudomonas syringae type III effector AvrRpt2 functions downstream or independently of SA to promote virulence on Arabidopsis thaliana. Plant J. 37: 494-504 (2004).

Chen Z, Ulmasov B, Folk WR. Nonsense and missense translational suppression in plant cells mediated by tRNA(Lys). Plant Mol. Biol. 36: 163-170 (1998).

Chen ZH, Jenkins GI, Nimmo HG. pH and carbon supply control the expression of phosphoenolpyruvate carboxylase kinase genes in Arabidopsis thaliana. Plant Cell Environ. 31: 1844-1850 (2008).

Chen ZH, Jenkins GI, Nimmo HG. Identification of an F box protein that negatively regulates Pi starvation responses. Plant Cell Physiol. 49: 1902-1906 (2008).

Cheng AX, Xiang CY, Li JX, Yang CQ, Hu WL, Wang LJ, Lou YG, Chen XY. The rice (E)-beta-caryophyllene synthase (OsTPS3) accounts for the major inducible volatile sesquiterpenes. Phytochemistry 68: 1632-1641 (2007).

Cheng CL, Acedo GN, Cristinsin M, Conkling MA. Sucrose mimics the light induction of Arabidopsis nitrate reductase gene transcription. Proc. Natl. Acad. Sci. U.S.A. 89: 1861-1864 (1992).

Cheng JC, Lertpiriyapong K, Wang S, Sung ZR. The role of the Arabidopsis ELD1 gene in cell development and photomorphogenesis in darkness. Plant Physiol. 123: 509-520 (2000).

Cheng JC, Seeley KA, Sung ZR. RML1 and RML2, Arabidopsis genes required for cell proliferation at the root tip. Plant Physiol. 107: 365-376 (1995).

Cheng L, Huan S, Sheng Y, Hua X, Shu Q, Song S, Jing X. GMCHI, cloned from soybean [Glycine max (L.) Meer.], enhances survival in transgenic Arabidopsis under abiotic stress. Plant Cell Rep. 28: 145-153 (2009).

Cheng NH, Liu JZ, Nelson RS, Hirschi KD. Characterization of CXIP4, a novel Arabidopsis protein that activates the H+/Ca2+ antiporter, CAX1. FEBS Lett. 559: 99-106 (2004).

Cheng NH, Pittman JK, Barkla BJ, Shigaki T, Hirschi KD. The Arabidopsis cax1 mutant exhibits impaired ion homeostasis, development, and hormonal responses and reveals interplay among vacuolar transporters. Plant Cell 15: 347-364 (2003).

Cheng NH, Pittman JK, Shigaki T, Hirschi KD. Characterization of CAX4, an Arabidopsis H(+)/cation antiporter. Plant Physiol. 128: 1245-1254 (2002).

Cheng NH, Pittman JK, Shigaki T, Lachmansingh J, Leclere S, Lahner B, Salt DE, Hirschi KD. Functional association of Arabidopsis CAX1 and CAX3 is required for normal growth and ion homeostasis. Plant Physiol. 138: 2048-2060 (2005).

Cheng Q, Liu HT, Bombelli P, Smith A, Slabas AR. Functional identification of AtFao3, a membrane bound long chain alcohol oxidase in Arabidopsis thaliana. FEBS Lett. 574: 62-68 (2004).

Cheng S, Sheen J, Gerrish C, Bolwell GP. Molecular identification of phenylalanine ammonia-lyase as a substrate of a specific constitutively active Arabidopsis CDPK expressed in maize protoplasts. FEBS Lett. 503: 185-188 (2001).

Cheng SH, Cline K, DeLisle AJ. An Arabidopsis chloroplast RNA-binding protein gene encodes multiple mRNAs with different 5' ends. Plant Physiol. 106: 303-311 (1994).

Cheng SH, Willmann MR, Chen HC, Sheen J. Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family. Plant Physiol. 129: 469-485 (2002).

Cheng WH, Endo A, Zhou L, Penney J, Chen HC, Arroyo A, Leon P, Nambara E, Asami T, Seo M, Koshiba T, Sheen J. A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions. Plant Cell 14: 2723-2743 (2002).

Cheng XF, Wang ZY. Overexpression of COL9, a CONSTANS-LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana. Plant J. 43: 758-768 (2005).

Cheng Y, Dai X, Zhao Y. AtCAND1, a HEAT--repeat protein that participates in auxin signaling in Arabidopsis. Plant Physiol. 135: 1020-1026 (2004).

Cheng Z, Sattler S, Maeda H, Sakuragi Y, Bryant DA, DellaPenna D. Highly divergent methyltransferases catalyze a conserved reaction in tocopherol and plastoquinone synthesis in cyanobacteria and photosynthetic eukaryotes. Plant Cell 15: 2343-2356 (2003).

Cheong NE, Choi YO, Lee KO, Kim WY, Jung BG, Chi YH, Jeong JS, Kim K, Cho MJ, Lee SY. Molecular cloning, expression, and functional characterization of a 2Cys-peroxiredoxin in Chinese cabbage. Plant Mol. Biol. 40: 825-834 (1999).

Cheong YH, Chang HS, Gupta R, Wang X, Zhu T, Luan S. Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis. Plant Physiol. 129: 661-677 (2002).

Cheong YH, Kim KN, Pandey GK, Gupta R, Grant JJ, Luan S. CBL1, a calcium sensor that differentially regulates salt, drought, and cold responses in Arabidopsis. Plant Cell 15: 1833-1845 (2003).

Cheong YH, Moon BC, Kim JK, Kim CY, Kim MC, Kim IH, Park CY, Kim JC, Park BO, Koo SC, Yoon HW, Chung WS, Lim CO, Lee SY, Cho MJ. BWMK1, a rice mitogen-activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor. Plant Physiol. 132: 1961-1972 (2003).

Cheong YH, Pandey GK, Grant JJ, Batistic O, Li L, Kim BG, Lee SC, Kudla J, Luan S. Two calcineurin B-like calcium sensors, interacting with protein kinase CIPK23, regulate leaf transpiration and root potassium uptake in Arabidopsis. Plant J. 52: 223-239 (2007).

Cherel I, Michard E, Platet N, Mouline K, Alcon C, Sentenac H, Thibaud JB. Physical and functional interaction of the Arabidopsis K(+) channel AKT2 and phosphatase AtPP2CA. Plant Cell 14: 1133-1146 (2002).

Chern M, Canlas PE, Fitzgerald HA, Ronald PC. Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1. Plant J. 43: 623-635 (2005).

Cheung AY, Chen CY, Tao LZ, Andreyeva T, Twell D, Wu HM. Regulation of pollen tube growth by Rac-like GTPases. J. Exp. Bot. 54: 73-81 (2003).

Cheung AY, Wu HM. Overexpression of an Arabidopsis formin stimulates supernumerary actin cable formation from pollen tube cell membrane. Plant Cell 16: 257-269 (2004).

Cheung MY, Zeng NY, Tong SW, Li FW, Zhao KJ, Zhang Q, Sun SS, Lam HM. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. J. Exp. Bot. 58: 4147-4159 (2007).

Cheung MY, Zeng NY, Tong SW, Wing-Yen Li F, Zhao KJ, Zhang Q, Sai-Ming Sun S, Lam HM. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. J. Exp. Bot. 59: 2903 (2008).

Chevalier C, Bourgeois E, Just D, Raymond P. Metabolic regulation of asparagine synthetase gene expression in maize (Zea mays L.) root tips. Plant J. 9: 1-11 (1996).

Chevalier F, Pata M, Nacry P, Doumas P, Rossignol M. Effects of phosphate availability on the root system architecture: large-scale analysis of the natural variation between Arabidopsis accessions. Plant Cell Environ. 26: 1839-1850 (2003).

Chevalier F, Rofidal V, Vanova P, Bergoin A, Rossignol M. Proteomic capacity of recent fluorescent dyes for protein staining. Phytochemistry 65: 1499-1506 (2004).

Chew O, Lister R, Qbadou S, Heazlewood JL, Soll J, Schleiff E, Millar AH, Whelan J. A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor. FEBS Lett. 557: 109-114 (2004).

Chi WT, Fung RW, Liu HC, Hsu CC, Charng YY. Temperature-induced lipocalin is required for basal and acquired thermotolerance in Arabidopsis. Plant Cell Environ. 32: 917-927 (2009).

Chi-Ham CL, Keaton MA, Cannon GC, Heinhorst S. The DNA-compacting protein DCP68 from soybean chloroplasts is ferredoxin:sulfite reductase and co-localizes with the organellar nucleoid. Plant Mol. Biol. 49: 621-631 (2002).

Chia DW, Yoder TJ, Reiter WD, Gibson SI. Fumaric acid: an overlooked form of fixed carbon in Arabidopsis and other plant species. Planta 211: 743-751 (2000).

Chia T, Thorneycroft D, Chapple A, Messerli G, Chen J, Zeeman SC, Smith SM, Smith AM. A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night. Plant J. 37: 853-863 (2004).

Chiang H-H, Dandekar AM. Regulation of proline accumulation in Arabidopsis thaliana (L.) Heyhn during development and in response to desiccation. Plant Cell Environ. 18: 1280-1290 (1995).

Chiang HH, Hwang I, Goodman HM. Isolation of the Arabidopsis GA4 locus. Plant Cell 7: 195-201 (1995).

Chiang YJ, Stushnoff C, McSay AE. Overexpression of mannitol-1-phosphate dehydrogenase increases mannitol accumulation and adds protection against chilling injury in petunia. J. Am. Soc. Hortic. Sci. 130: 605-610 (2005).

Chiappetta A, De Witte W, Racchi ML, Bitonti MB, Van Onckelen H, Innocenti AM. Altered cytokinin distribution in the shootless maize mutant ed*41. Aust. J. Plant Physiol. 28: 307-313 (2001).

Chiba Y, Ishikawa M, Kijima F, Tyson RH, Kim J, Yamamoto A, Nambara E, Leustek T, Wallsgrove RM, Naito S. Evidence for autoregulation of cystathionine gamma-synthase mRNA stability in Arabidopsis. Science 286: 1371-1374 (1999).

Chiba Y, Sakurai R, Yoshino M, Ominato K, Ishikawa M, Onouchi H, Naito S. S-Adenosyl-L-methionine is an effector in the posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 100: 10225-10230 (2003).

Chibani K, Ali-Rachedi S, Job C, Job D, Jullien M, Grappin P. Proteomic analysis of seed dormancy in Arabidopsis. Plant Physiol. 142: 1493-1510 (2006).

Chien JC, Sussex IM. Differential regulation of trichome formation on the adaxial and abaxial leaf surfaces by gibberellins and photoperiod in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 111: 1321-1328 (1996).

Chilley PM, Casson SA, Tarkowski P, Hawkins N, Wang KL, Hussey PJ, Beale M, Ecker JR, Sandberg GK, Lindsey K. The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling. Plant Cell 18: 3058-3072 (2006).

Chinchilla D, Bauer Z, Regenass M, Boller T, Felix G. The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception. Plant Cell 18: 465-476 (2006).

Chini A, Fonseca S, Chico JM, Fernandez-Calvo P, Solano R. The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Plant J. 59: 77-87 (2009).

Chini A, Loake GJ. Motifs specific for the ADR1 NBS-LRR protein family in Arabidopsis are conserved among NBS-LRR sequences from both dicotyledonous and monocotyledonous plants. Planta 221: 597-601 (2005).

Chiou TJ, Aung K, Lin SI, Wu CC, Chiang SF, Su CL. Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell 18: 412-421 (2006).

Chisholm ST, Parra MA, Anderberg RJ, Carrington JC. Arabidopsis RTM1 and RTM2 genes function in phloem to restrict long-distance movement of tobacco etch virus. Plant Physiol. 127: 1667-1675 (2001).

Chiu WH, Chandler J, Cnops G, Van Lijsebettens M, Werr W. Mutations in the TORNADO2 gene affect cellular decisions in the peripheral zone of the shoot apical meristem of Arabidopsis thaliana. Plant Mol. Biol. 63: 731-744 (2007).

Chivasa S, Hamilton JM, Pringle RS, Ndimba BK, Simon WJ, Lindsey K, Slabas AR. Proteomic analysis of differentially expressed proteins in fungal elicitor-treated Arabidopsis cell cultures. J. Exp. Bot. 57: 1553-1562 (2006).

Chivasa S, Ndimba BK, Simon WJ, Lindsey K, Slabas AR. Extracellular ATP functions as an endogenous external metabolite regulating plant cell viability. Plant Cell 17: 3019-3034 (2005).

Chiwocha SD, Cutler AJ, Abrams SR, Ambrose SJ, Yang J, Ross AR, Kermode AR. The etr1-2 mutation in Arabidopsis thaliana affects the abscisic acid, auxin, cytokinin and gibberellin metabolic pathways during maintenance of seed dormancy, moist-chilling and germination. Plant J. 42: 35-48 (2005).

Cho D, Kim SA, Murata Y, Lee S, Jae SK, Nam HG, Kwak JM. De-regulated expression of the plant glutamate receptor homolog AtGLR3.1 impairs long-term Ca2+-programmed stomatal closure. Plant J. 58: 437-449 (2009).

Cho HT, Cosgrove DJ. Regulation of root hair initiation and expansin gene expression in Arabidopsis. Plant Cell 14: 3237-3253 (2002).

Cho HY, Tseng TS, Kaiserli E, Sullivan S, Christie JM, Briggs WR. Physiological roles of the LOV domains of phototropin 1 and phototropin 2 in Arabidopsis. Plant Physiol. 143: 517-529 (2007).

Cho JI, Ryoo N, Eom JS, Lee DW, Kim HB, Jeong SW, Lee YH, Kwon YK, Cho MH, Bhoo SH, Hahn TR, Park YI, Hwang I, Sheen J, Jeon JS. Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors. Plant Physiol. 149: 745-759 (2009).

Cho M, Lee SH, Cho HT. P-glycoprotein4 displays auxin efflux transporter-like action in Arabidopsis root hair cells and tobacco cells. Plant Cell 19: 3930-3943 (2007).

Cho MH, Corea OR, Yang H, Bedgar DL, Laskar DD, Anterola AM, Moog-Anterola FA, Hood RL, Kohalmi SE, Bernards MA, Kang C, Davin LB, Lewis NG. Phenylalanine biosynthesis in Arabidopsis thaliana: identification and characterization of arogenate dehydratases. J. Biol. Chem. 282: 30827-30835 (2007).

Cho S, Jang S, Chae S, Chung KM, Moon YH, An G, Jang SK. Analysis of the C-terminal region of Arabidopsis thaliana APETALA1 as a transcription activation domain. Plant Mol. Biol. 40: 419-429 (1999).

Cho SK, Chung HS, Ryu MY, Park MJ, Lee MM, Bahk YY, Kim J, Pai HS, Kim WT. Heterologous expression and molecular and cellular characterization of CaPUB1 encoding a hot pepper U-box E3 ubiquitin ligase homolog. Plant Physiol. 142: 1664-1682 (2006).

Cho SK, Ryu MY, Song C, Kwak JM, Kim WT. Arabidopsis PUB22 and PUB23 are homologous U-box E3 ubiquitin ligases that play combinatory roles in response to drought stress. Plant Cell 20: 1899-1914 (2008).

Cho WK, Chen XY, Chu H, Rim Y, Kim S, Kim ST, Kim SW, Park ZY, Kim JY. Proteomic analysis of the secretome of rice calli. Physiol. Plant. 135: 331-341 (2009).

Cho Y, Walbot V. Computational methods for gene annotation: the Arabidopsis genome. Curr. Opin. Biotechnol. 12: 126-130 (2001).

Cho YH, Yoo SD. ETHYLENE RESPONSE 1 histidine kinase activity of Arabidopsis promotes plant growth. Plant Physiol. 143: 612-616 (2007).

Choe S, Dilkes BP, Fujioka S, Takatsuto S, Sakurai A, Feldmann KA. The DWF4 gene of Arabidopsis encodes a cytochrome P450 that mediates multiple 22alpha-hydroxylation steps in brassinosteroid biosynthesis. Plant Cell 10: 231-243 (1998).

Choe S, Dilkes BP, Gregory BD, Ross AS, Yuan H, Noguchi T, Fujioka S, Takatsuto S, Tanaka A, Toshida S, Tax FE, Feldmann KA. The Arabidopsis dwarf1 mutant is defective in the conversion of 24-methylenecholesterol to campesterol in brassinosteroid biosynthesis. Plant Physiol. 119: 897-907 (1999).

Choe S, Noguchi T, Fujioka S, Takatsuto S, Tissier CP, Gregory BD, Ross AS, Tanaka A, Yoshida S, Tax FE, Feldmann KA. The Arabidopsis dwf7/ste1 mutant is defective in the delta7 sterol C-5 desaturation step leading to brassinosteroid biosynthesis. Plant Cell 11: 207-221 (1999).

Choe S, Schmitz RJ, Fujioka S, Takatsuto S, Lee MO, Yoshida S, Feldmann KA, Tax FE. Arabidopsis brassinosteroid-insensitive dwarf12 mutants are semidominant and defective in a glycogen synthase kinase 3beta-like kinase. Plant Physiol. 130: 1506-1515 (2002).

Choi DW, Rodriguez EM, Close TJ. Barley cbf3 gene identification, expression pattern, and map location. Plant Physiol. 129: 1781-1787 (2002).

Choi HI, Park HJ, Park JH, Kim S, Im MY, Seo HH, Kim YW, Hwang I, Kim SY. Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity. Plant Physiol. 139: 1750-1761 (2005).

Choi HW, Lee BG, Kim NH, Park Y, Lim CW, Song HK, Hwang BK. A role for a menthone reductase in resistance against microbial pathogens in plants. Plant Physiol. 148: 383-401 (2008).

Choi J, Hyun Y, Kang MJ, In Yun H, Yun JY, Lister C, Dean C, Amasino RM, Noh B, Noh YS, Choi Y. Resetting and regulation of Flowering Locus C expression during Arabidopsis reproductive development. Plant J. 57: 918-931 (2009).

Choi JD, Hoshino A, Park KI, Park IS, Iida S. Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor. Plant J. 49: 924-934 (2007).

Choi JK, Yu F, Wurtele ES, Nikolau BJ. Molecular cloning and characterization of the cDNA coding for the biotin-containing subunit of the chloroplastic acetyl-coenzyme A carboxylase. Plant Physiol. 109: 619-625 (1995).

Choi K, Kim S, Kim SY, Kim M, Hyun Y, Lee H, Choe S, Kim SG, Michaels S, Lee I. SUPPRESSOR OF FRIGIDA3 encodes a ACTIN-RELATED PROTEIN6 required for floral repression in Arabidopsis. Plant Cell 17: 2647-2660 (2005).

Chono M, Honda I, Zeniya H, Yoneyama K, Saisho D, Takeda K, Takatsuto S, Hoshino T, Watanabe Y. A semidwarf phenotype of barley uzu results from a nucleotide substitution in the gene encoding a putative brassinosteroid receptor. Plant Physiol. 133: 1209-1219 (2003).

Chopin F, Orsel M, Dorbe MF, Chardon F, Truong HN, Miller AJ, Krapp A, Daniel-Vedele F. The Arabidopsis ATNRT2.7 nitrate transporter controls nitrate content in seeds. Plant Cell 19: 1590-1602 (2007).

Chory J, Peto CA, Ashbaugh M, Saganich R, Pratt L, Ausubel F. Different roles for phytochrome in etiolated and green plants deduced from characterization of Arabidopsis thaliana mutants. Plant Cell 1: 867-880 (1989).

Choudhary NL, Sairam RK, Tyagi A. Expression of delta1-pyrroline-5-carboxylate synthetase gene during drought in rice (Oryza sativa L ). Indian J. Biochem. Biophys. 42: 366-370 (2005).

Choy MK, Sullivan JA, Theobald JC, Davies WJ, Gray JC. An Arabidopsis mutant able to green after extended dark periods shows decreased transcripts of seed protein genes and altered sensitivity to abscisic acid. J. Exp. Bot. 59: 3869-3884 (2008).

Chrispeels HE, Oettinger H, Janvier N, Tague BW. AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation. Plant Mol. Biol. 42: 279-290 (2000).

Christensen A, Svensson K, Persson S, Jung J, Michalak M, Widell S, Sommarin M. Functional characterization of Arabidopsis calreticulin1a: a key alleviator of endoplasmic reticulum stress. Plant Cell Physiol. 49: 912-924 (2008).

Christensen AC, Lyznik A, Mohammed S, Elowsky CG, Elo A, Yule R, Mackenzie SA. Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons. Plant Cell 17: 2805-2816 (2005).

Christensen CA, Gorsich SW, Brown RH, Jones LG, Brown J, Shaw JM, Drews GN. Mitochondrial GFA2 is required for synergid cell death in Arabidopsis. Plant Cell 14: 2215-2232 (2002).

Christensen SK, Dagenais N, Chory J, Weigel D. Regulation of auxin response by the protein kinase PINOID. Cell 100: 469-478 (2000).

Christian M, Hannah WB, Lüthen H, Jones AM. Identification of auxins by a chemical genomics approach. J. Exp. Bot. 59: 2757-2767 (2008).

Christians MJ, Gingerich DJ, Hansen M, Binder BM, Kieber JJ, Vierstra RD. The BTB ubiquitin ligases ETO1, EOL1 and EOL2 act collectively to regulate ethylene biosynthesis in Arabidopsis by controlling type-2 ACC synthase levels. Plant J. 57: 332-345 (2009).

Christians MJ, Larsen PB. Mutational loss of the prohibitin AtPHB3 results in an extreme constitutive ethylene response phenotype coupled with partial loss of ethylene-inducible gene expression in Arabidopsis seedlings. J. Exp. Bot. 58: 2237-2248 (2007).

Christians MJ, Robles LM, Zeller SM, Larsen PB. The eer5 mutation, which affects a novel proteasome-related subunit, indicates a prominent role for the COP9 signalosome in resetting the ethylene-signaling pathway in Arabidopsis. Plant J. 55: 467-477 (2008).

Christiansen LC, Dal Degan F, Ulvskov P, Borkhardt B. Examination of the dehiscence zone in soybean pods and isolation of a dehiscence-related endopolygalacturonase gene. Plant Cell Environ. 25: 479-490 (2002).

Christianson JA, Wilson IW, Llewellyn DJ, Dennis ES. The low-oxygen-induced NAC domain transcription factor ANAC102 affects viability of Arabidopsis seeds following low-oxygen treatment. Plant Physiol. 149: 1724-1738 (2009).

Christie JM. Phototropin blue-light receptors. Annu. Rev. Plant Biol. 58: 21-45 (2007).

Christie JM, Swartz TE, Bogomolni RA, Briggs WR. Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function. Plant J. 32: 205-219 (2002).

Christman MA, Donovan LA, Richards JH. Magnitude of nighttime transpiration does not affect plant growth or nutrition in well-watered Arabidopsis. Physiol. Plant. 136: 264-273 (2009).

Christman MA, Richards JH, McKay JK, Stahl EA, Juenger TE, Donovan LA. Genetic variation in Arabidopsis thaliana for nighttime leaf conductance. Plant Cell Environ. 31: 1170-1178 (2008).

Christmann A, Hoffmann T, Teplova I, Grill E, Muller A. Generation of active pools of abscisic acid revealed by in vivo imaging of water-stressed Arabidopsis. Plant Physiol. 137: 209-219 (2005).

Chronis D, Krishnan HB. Sulfur assimilation in soybean (Glycine max [L.] Merr.): molecular cloning and characterization of a cytosolic isoform of serine acetyltransferase. Planta 218: 417-426 (2004).

Chrost B, Kolukisaoglu U, Schulz B, Krupinska K. An alpha-galactosidase with an essential function during leaf development. Planta 225: 311-320 (2007).

Chu B, Lindstrom JT, Belanger FC. Arabidopsis thaliana expresses three divergent Srp54 genes. Plant Physiol. 106: 1157-1162 (1994).

Chu B, Snustad DP, Carter JV. Alteration of [beta]-tubulin gene expression during low-temperature exposure in leaves of Arabidopsis thaliana. Plant Physiol. 103: 371-377 (1993).

Chu CC, Lee WC, Guo WY, Pan SM, Chen LJ, Li HM, Jinn TL. A copper chaperone for superoxide dismutase that confers three types of copper/zinc superoxide dismutase activity in Arabidopsis. Plant Physiol. 139: 425-436 (2005).

Chu H, Qian Q, Liang W, Yin C, Tan H, Yao X, Yuan Z, Yang J, Huang H, Luo D, Ma H, Zhang D. The FLORAL ORGAN NUMBER4 gene encoding a putative ortholog of Arabidopsis CLAVATA3 regulates apical meristem size in rice. Plant Physiol. 142: 1039-1052 (2006).

Chu Z, Chen H, Zhang Y, Zhang Z, Zheng N, Yin B, Yan H, Zhu L, Zhao X, Yuan M, Zhang X, Xie Q. Knockout of the AtCESA2 gene affects microtubule orientation and causes abnormal cell expansion in Arabidopsis. Plant Physiol. 143: 213-224 (2007).

Chuang HW, Zhang W, Gray WM. Arabidopsis ETA2, an apparent ortholog of the human cullin-interacting protein CAND1, is required for auxin responses mediated by the SCF(TIR1) ubiquitin ligase. Plant Cell 16: 1883-1897 (2004).

Chung H-J, Sehnke PC, Ferl RJ. The 14-3-3 proteins: cellular regulators of plant metabolism. Trends Plant Sci. 4: 367-371 (1999).

Chung HJ, Ferl RJ. Arabidopsis alcohol dehydrogenase expression in both shoots and roots is conditioned by root growth environment. Plant Physiol. 121: 429-436 (1999).

Chung HS, Howe GA. A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. Plant Cell 21: 131-145 (2009).

Chung JS, Zhu JK, Bressan RA, Hasegawa PM, Shi H. Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis. Plant J. 53: 554-565 (2008).

Chung KJ, Hwang SK, Hahn BS, Kim KH, Kim JB, Kim YH, Yang JS, Ha SH. Authentic seed-specific activity of the Perilla oleosin 19 gene promoter in transgenic Arabidopsis. Plant Cell Rep. 27: 29-37 (2008).

Chung S, Parish RW. Combinatorial interactions of multiple cis-elements regulating the induction of the Arabidopsis XERO2 dehydrin gene by abscisic acid and cold. Plant J. 54: 15-29 (2008).

Chung T, Suttangkakul A, Vierstra RD. The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability. Plant Physiol. 149: 220-234 (2009).

Churchman ML, Brown ML, Kato N, Kirik V, Hulskamp M, Inze D, De Veylder L, Walker JD, Zheng Z, Oppenheimer DG, Gwin T, Churchman J, Larkin JC. SIAMESE, a plant-specific cell cycle regulator, controls endoreplication onset in Arabidopsis thaliana. Plant Cell 18: 3145-3157 (2006).

Chye ML. Arabidopsis cDNA encoding a membrane-associated protein with an acyl-CoA binding domain. Plant Mol. Biol. 38: 827-838 (1998).

Chye ML, Huang BQ, Zee SY. Isolation of a gene encoding Arabidopsis membrane-associated acyl-CoA binding protein and immunolocalization of its gene product. Plant J. 18: 205-214 (1999).

Chye ML, Li HY, Yung MH. Single amino acid substitutions at the acyl-CoA-binding domain interrupt 14[C]palmitoyl-CoA binding of ACBP2, an Arabidopsis acyl-CoA-binding protein with ankyrin repeats. Plant Mol. Biol. 44: 711-721 (2000).

Ciannamea S, Kaufmann K, Frau M, Tonaco IA, Petersen K, Nielsen KK, Angenent GC, Immink RG. Protein interactions of MADS box transcription factors involved in flowering in Lolium perenne. J. Exp. Bot. 57: 3419-3431 (2006).

Ciarbelli AR, Ciolfi A, Salvucci S, Ruzza V, Possenti M, Carabelli M, Fruscalzo A, Sessa G, Morelli G, Ruberti I. The Arabidopsis homeodomain-leucine zipper II gene family: diversity and redundancy. Plant Mol. Biol. 68: 465-478 (2008).

Ciereszko I, Johansson H, Hurry V, Kleczkowski LA. Phosphate status affects the gene expression, protein content and enzymatic activity of UDP-glucose pyrophosphorylase in wild-type and pho mutants of Arabidopsis. Planta 212: 598-605 (2001).

Ciereszko I, Johansson H, Kleczkowski LA. Sucrose and light regulation of a cold-inducible UDP-glucose pyrophosphorylase gene via a hexokinase-independent and abscisic acid-insensitive pathway in Arabidopsis. Biochem. J. 354: 67-72 (2001).

Cinege G, Louis S, Hansch R, Schnitzler JP. Regulation of isoprene synthase promoter by environmental and internal factors. Plant Mol. Biol. 69: 593-604 (2009).

Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol. Biol. 68: 81-92 (2008).

Citerne HL, Luo D, Pennington RT, Coen E, Cronk QC. A phylogenomic investigation of CYCLOIDEA-like TCP genes in the Leguminosae. Plant Physiol. 131: 1042-1053 (2003).

Ckurshumova W, Koizumi K, Chatfield SP, Sanchez-Buelna SU, Gangaeva AE, Berleth T. Tissue-specific GAL4 expression patterns as a resource enabling targeted gene expression, cell type specific transcript profiling and gene function characterization in the Arabidopsis vascular system. Plant Cell Physiol. 50: 141-150 (2009).

Clack T, Shokry A, Moffet M, Liu P, Faul M, Sharrock RA. Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic helix-loop-helix transcription factor. Plant Cell 21: 786-799 (2009).

Claisse G, Charrier B, Kreis M. The Arabidopsis thaliana GSK3/Shaggy like kinase AtSK3-2 modulates floral cell expansion. Plant Mol. Biol. 64: 113-124 (2007).

Clark GB, Lee D, Dauwalder M, Roux SJ. Immunolocalization and histochemical evidence for the association of two different Arabidopsis annexins with secretion during early seedling growth and development. Planta 220: 621-631 (2005).

Clark SE, Williams RW, Meyerowitz EM. The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis. Cell 89: 575-585 (1997).

Clark SM, Di Leo R, Dhanoa PK, Van Cauwenberghe OR, Mullen RT, Shelp BJ. Biochemical characterization, mitochondrial localization, expression, and potential functions for an Arabidopsis gamma-aminobutyrate transaminase that utilizes both pyruvate and glyoxylate. J. Exp. Bot. 60: 1743-1757 (2009).

Clarke A, Desikan R, Hurst RD, Hancock JT, Neill SJ. NO way back: nitric oxide and programmed cell death in Arabidopsis thaliana suspension cultures. Plant J. 24: 667-677 (2000).

Clarke AK, MacDonald TM, Sjogren LLE. The ATP-dependent Clp protease in chloroplasts of higher plants. Physiol. Plant. 123: 406-412 (2005).

Clarke JD, Liu Y, Klessig DF, Dong X. Uncoupling PR gene expression from NPR1 and bacterial resistance: characterization of the dominant Arabidopsis cpr6-1 mutant. Plant Cell 10: 557-569 (1998).

Clarke SM, Mur LA, Wood JE, Scott IM. Salicylic acid dependent signaling promotes basal thermotolerance but is not essential for acquired thermotolerance in Arabidopsis thaliana. Plant J. 38: 432-447 (2004).

Clauss K, Baumert A, Nimtz M, Milkowski C, Strack D. Role of a GDSL lipase-like protein as sinapine esterase in Brassicaceae. Plant J. 53: 802-813 (2008).

Clauss MJ, Koch MA. Poorly known relatives of Arabidopsis thaliana. Trends Plant Sci. 11: 449-459 (2006).

Clay NK, Nelson T. The recessive epigenetic swellmap mutation affects the expression of two step II splicing factors required for the transcription of the cell proliferation gene STRUWWELPETER and for the timing of cell cycle arrest in the Arabidopsis leaf. Plant Cell 17: 1994-2008 (2005).

Clay NK, Nelson T. Arabidopsis thickvein mutation affects vein thickness and organ vascularization, and resides in a provascular cell-specific spermine synthase involved in vein definition and in polar auxin transport. Plant Physiol. 138: 767-777 (2005).

Clay NK, Nelson T. VH1, a provascular cell-specific receptor kinase that influences leaf cell patterns in Arabidopsis. Plant Cell 14: 2707-2722 (2002).

Clayton H, Knight MR, Knight H, McAinsh MR, Hetherington AM. Dissection of the ozone-induced calcium signature. Plant J. 17: 575-579 (1999).

Clemens S. Molecular mechanisms of plant metal tolerance and homeostasis. Planta 212: 475-486 (2001).

Clemens S, Kim EJ, Neumann D, Schroeder JI. Tolerance to toxic metals by a gene family of phytochelatin synthases from plants and yeast. EMBO J. 18: 3325-3333 (1999).

Clemens S, Schroeder JI, Degenkolb T. Caenorhabditis elegans expresses a functional phytochelatin synthase. Eur. J. Biochem. 268: 3640-3643 (2001).

Clerkx EJ, El-Lithy ME, Vierling E, Ruys GJ, Blankestijn-De Vries H, Groot SP, Vreugdenhil D, Koornneef M. Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiol. 135: 432-443 (2004).

Clerkx EJ, Vries HB, Ruys GJ, Groot SP, Koornneef M. Characterization of green seed, an enhancer of abi3-1 in Arabidopsis that affects seed longevity. Plant Physiol. 132: 1077-1084 (2003).

Clerkx EJM, Blankestijn-De Vries H, Ruys GJ, Groot SPC, Koornneef M. Genetic differences in seed longevity of various Arabidopsis mutants. Physiol. Plant. 121: 448-461 (2004).

Clifton R, Lister R, Parker KL, Sappl PG, Elhafez D, Millar AH, Day DA, Whelan J. Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana. Plant Mol. Biol. 58: 193-212 (2005).

Cline MG, Oh C. A reappraisal of the role of abscisic acid and its interaction with auxin in apical dominance. Ann. Bot. (Lond.) 98: 891-897 (2006).

Cloix C, Yukawa Y, Tutois S, Sugiura M, Tourmente S. In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 5S rRNA genes. Plant J. 35: 251-261 (2003).

Clore AM, Turner WS, Morse AM, Whetten RW. Changes in mitogen-activated protein kinase activity occur in the maize pulvinus in response to gravistimulation and are important for the bending response. Plant Cell Environ. 26: 991-1001 (2003).

Clouse SD. Plant hormones: brassinosteroids in the spotlight. Curr. Biol. 6: 658-661 (1996).

Clouse SD. Arabidopsis mutants reveal multiple roles for sterols in plant development. Plant Cell 14: 1995-2000 (2002).

Clouse SD, Langford M, McMorris TC. A brassinosteroid-insensitive mutant in Arabidopsis thaliana exhibits multiple defects in growth and development. Plant Physiol. 111: 671-678 (1996).

Cluis CP, Mouchel CF, Hardtke CS. The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways. Plant J. 38: 332-347 (2004).

Cnops G, Jover-Gil S, Peters JL, Neyt P, De Block S, Robles P, Ponce MR, Gerats T, Micol JL, Van Lijsebettens M. The rotunda2 mutants identify a role for the LEUNIG gene in vegetative leaf morphogenesis. J. Exp. Bot. 55: 1529-1539 (2004).

Cnops G, Neyt P, Raes J, Petrarulo M, Nelissen H, Malenica N, Luschnig C, Tietz O, Ditengou F, Palme K, Azmi A, Prinsen E, Van Lijsebettens M. The TORNADO1 and TORNADO2 genes function in several patterning processes during early leaf development in Arabidopsis thaliana. Plant Cell 18: 852-866 (2006).

Coates JC, Laplaze L, Haseloff J. Armadillo-related proteins promote lateral root development in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 1621-1626 (2006).

Cobbett C, Goldsbrough P. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 53: 159-182 (2002).

Cobbett CS. A family of phytochelatin synthase genes from plant, fungal and animal species. Trends Plant Sci. 4: 335-337 (1999).

Cobbett CS. Heavy metal detoxification in plants: phytochelatin biosynthesis and function. IUBMB Life 51: 183-188 (2001).

Cochrane FC, Davin LB, Lewis NG. The Arabidopsis phenylalanine ammonia lyase gene family: kinetic characterization of the four PAL isoforms. Phytochemistry 65: 1557-1564 (2004).

Coego A, Ramirez V, Ellul P, Mayda E, Vera P. The H2O2-regulated Ep5C gene encodes a peroxidase required for bacterial speck susceptibility in tomato. Plant J. 42: 283-293 (2005).

Coego A, Ramirez V, Gil MJ, Flors V, Mauch-Mani B, Vera P. An Arabidopsis homeodomain transcription factor, OVEREXPRESSOR OF CATIONIC PEROXIDASE 3, mediates resistance to infection by necrotrophic pathogens. Plant Cell 17: 2123-2137 (2005).

Coelho CM, Dante RA, Sabelli PA, Sun Y, Dilkes BP, Gordon-Kamm WJ, Larkins BA. Cyclin-dependent kinase inhibitors in maize endosperm and their potential role in endoreduplication. Plant Physiol. 138: 2323-2336 (2005).

Coen ES, Meyerowitz EM. The war of the whorls: genetic interactions controlling flower development. Nature 353: 31-37 (1991).

Cohen CK, Garvin DF, Kochian LV. Kinetic properties of a micronutrient transporter from Pisum sativum indicate a primary function in Fe uptake from the soil. Planta 218: 784-792 (2004).

Cohen JD, Slovin JP, Hendrickson AM. Two genetically discrete pathways convert tryptophan to auxin: more redundancy in auxin biosynthesis. Trends Plant Sci. 8: 197-199 (2003).

Cohen S, Houben A, Segal D. Extrachromosomal circular DNA derived from tandemly repeated genomic sequences in plants. Plant J. 53: 1027-1034 (2008).

Coimbra S, Almeida J, Junqueira V, Costa ML, Pereira LG. Arabinogalactan proteins as molecular markers in Arabidopsis thaliana sexual reproduction. J. Exp. Bot. 58: 4027-4035 (2007).

Coker JS, Vian A, Davies E. Identification, accumulation, and functional prediction of novel tomato transcripts systemically upregulated after fire damage. Physiol. Plant. 124: 311-322 (2005).

Colangelo EP, Guerinot ML. The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. Plant Cell 16: 3400-3412 (2004).

Colby T, Matthai A, Boeckelmann A, Stuible HP. SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis. Plant Physiol. 142: 318-332 (2006).

Colcombet J, Boisson-Dernier A, Ros-Palau R, Vera CE, Schroeder JI. Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASES1 and 2 are essential for tapetum development and microspore maturation. Plant Cell 17: 3350-3361 (2005).

Colcombet J, Lelievre F, Thomine S, Barbier-Brygoo H, Frachisse JM. Distinct pH regulation of slow and rapid anion channels at the plasma membrane of Arabidopsis thaliana hypocotyl cells. J. Exp. Bot. 56: 1897-1903 (2005).

Cole RA, Synek L, Zarsky V, Fowler JE. SEC8, a subunit of the putative Arabidopsis exocyst complex, facilitates pollen germination and competitive pollen tube growth. Plant Physiol. 138: 2005-2018 (2005).

Coles JP, Phillips AL, Croker SJ, Garcia-Lepe R, Lewis MJ, Hedden P. Modification of gibberellin production and plant development in Arabidopsis by sense and antisense expression of gibberellin 20-oxidase genes. Plant J. 17: 547-556 (1999).

Colinas J, Birnbaum K, Benfey PN. Using cauliflower to find conserved non-coding regions in Arabidopsis. Plant Physiol. 129: 451-454 (2002).

Coll NS, Danon A, Meurer J, Cho WK, Apel K. Characterization of soldat8, a suppressor of singlet oxygen-induced cell death in Arabidopsis seedlings. Plant Cell Physiol. 50: 707-718 (2009).

Collakova E, DellaPenna D. Isolation and functional analysis of homogentisate phytyltransferase from Synechocystis sp. PCC 6803 and Arabidopsis. Plant Physiol. 127: 1113-1124 (2001).

Collakova E, DellaPenna D. Homogentisate phytyltransferase activity is limiting for tocopherol biosynthesis in Arabidopsis. Plant Physiol. 131: 632-642 (2003).

Collakova E, DellaPenna D. The role of homogentisate phytyltransferase and other tocopherol pathway enzymes in the regulation of tocopherol synthesis during abiotic stress. Plant Physiol. 133: 930-940 (2003).

Collakova E, Goyer A, Naponelli V, Krassovskaya I, Gregory JF 3rd, Hanson AD, Shachar-Hill Y. Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration. Plant Cell 20: 1818-1832 (2008).

Collett CE, Harberd NP, Leyser O. Hormonal interactions in the control of Arabidopsis hypocotyl elongation. Plant Physiol. 124: 553-562 (2000).

Collett H, Shen A, Gardner M, Farrant JM, Denby KJ, Illing N. Towards transcript profiling of desiccation tolerance in Xerophyta humilis: Construction of a normalized 11 k X. humilis cDNA set and microarray expression analysis of 424 cDNAs in response to dehydration. Physiol. Plant. 122: 39-53 (2004).

Collette VE, Jameson PE, Schwinn KE, Umaharan P, Davies KM. Temporal and spatial expression of flavonoid biosynthetic genes in flowers of Anthurium andraeanum. Physiol. Plant. 122: 297-304 (2004).

Collin S, Justin AM, Cantrel C, Arondel V, Kader JC. Identification of AtPIS, a phosphatidylinositol synthase from Arabidopsis. Eur. J. Biochem. 262: 652-658 (1999).

Collin V, Lamkemeyer P, Miginiac-Maslow M, Hirasawa M, Knaff DB, Dietz KJ, Issakidis-Bourguet E. Characterization of plastidial thioredoxins from Arabidopsis belonging to the new y-type. Plant Physiol. 136: 4088-4095 (2004).

Collinge MA, Spillane C, Kohler C, Gheyselinck J, Grossniklaus U. Genetic interaction of an origin recognition complex subunit and the Polycomb group gene MEDEA during seed development. Plant Cell 16: 1035-1046 (2004).

Collings DA, Gebbie LK, Howles PA, Hurley UA, Birch RJ, Cork AH, Hocart CH, Arioli T, Williamson RE. Arabidopsis dynamin-like protein DRP1A: a null mutant with widespread defects in endocytosis, cellulose synthesis, cytokinesis, and cell expansion. J. Exp. Bot. 59: 361-376 (2008).

Collings DA, Harper JD, Vaughn KC. The association of peroxisomes with the developing cell plate in dividing onion root cells depends on actin microfilaments and myosin. Planta 218: 204-216 (2003).

Colmenero-Flores JM, Martinez G, Gamba G, Vazquez N, Iglesias DJ, Brumos J, Talon M. Identification and functional characterization of cation-chloride cotransporters in plants. Plant J. 50: 278-292 (2007).

Colombo L, Battaglia R, Kater MM. Arabidopsis ovule development and its evolutionary conservation. Trends Plant Sci. 13: 444-450 (2008).

Colombo M, Masiero S, Vanzulli S, Lardelli P, Kater MM, Colombo L. AGL23, a type I MADS-box gene that controls female gametophyte and embryo development in Arabidopsis. Plant J. 54: 1037-1048 (2008).

Colon-Carmona A, Chen DL, Yeh KC, Abel S. Aux/IAA proteins are phosphorylated by phytochrome in vitro. Plant Physiol. 124: 1728-1738 (2000).

Colville L, Smirnoff N. Antioxidant status, peroxidase activity, and PR protein transcript levels in ascorbate-deficient Arabidopsis thaliana vtc mutants. J. Exp. Bot. 59: 3857-3868 (2008).

Comai L. Genetic and epigenetic interactions in allopolyploid plants. Plant Mol. Biol. 43: 387-399 (2000).

Comella P, Wu HJ, Laudie M, Berger C, Cooke R, Delseny M, Grellet F. Fine sequence analysis of 60 kb around the Arabidopsis thaliana AtEm1 locus on chromosome III. Plant Mol. Biol. 41: 687-700 (1999).

Comelli RN, Viola IL, Gonzalez DH. Characterization of promoter elements required for expression and induction by sucrose of the Arabidopsis COX5b-1 nuclear gene, encoding the zinc-binding subunit of cytochrome c oxidase. Plant Mol. Biol. 69: 729-743 (2009).

Cominelli E, Galbiati M, Vavasseur A, Conti L, Sala T, Vuylsteke M, Leonhardt N, Dellaporta SL, Tonelli C. A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance. Curr. Biol. 15: 1196-1200 (2005).

Cominelli E, Sala T, Calvi D, Gusmaroli G, Tonelli C. Over-expression of the Arabidopsis AtMYB41 gene alters cell expansion and leaf surface permeability. Plant J. 53: 53-64 (2008).

Conklin PL. Recent advances in the role and biosynthesis of ascorbic acid in plants. Plant Cell Environ. 24: 383-394 (2001).

Conklin PL, Barth C. Ascorbic acid, a familiar small molecule intertwined in the response of plants to ozone, pathogens, and the onset of senescence. Plant Cell Environ. 27: 959-970 (2004).

Conklin PL, Last RL. Differential accumulation of antioxidant mRNAs in Arabidopsis thaliana exposed to ozone. Plant Physiol. 109: 203-212 (1995).

Conklin PL, Pallanca JE, Last RL, Smirnoff N. L-ascorbic acid metabolism in the ascorbate-deficient Arabidopsis mutant vtc1. Plant Physiol. 115: 1277-1285 (1997).

Conley TR, Peng HP, Shih MC. Mutations affecting induction of glycolytic and fermentative genes during germination and environmental stresses in Arabidopsis. Plant Physiol. 119: 599-608 (1999).

Conley TR, Shih MC. Effects of light and chloroplast functional state on expression of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in long hypocotyl (hy) mutants and wild-type Arabidopsis thaliana. Plant Physiol. 108: 1013-1022 (1995).

Conner JA, Conner P, Nasrallah ME, Nasrallah JB. Comparative mapping of the Brassica S locus region and its homeolog in Arabidopsis. Implications for the evolution of mating systems in the Brassicaceae. Plant Cell 10: 801-812 (1998).

Connolly EL, Campbell NH, Grotz N, Prichard CL, Guerinot ML. Overexpression of the FRO2 ferric chelate reductase confers tolerance to growth on low iron and uncovers posttranscriptional control. Plant Physiol. 133: 1102-1110 (2003).

Connolly EL, Fett JP, Guerinot ML. Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation. Plant Cell 14: 1347-1357 (2002).

Constan D, Froehlich JE, Rangarajan S, Keegstra K. A stromal Hsp100 protein is required for normal chloroplast development and function in Arabidopsis. Plant Physiol. 136: 3605-3615 (2004).

Constan D, Patel R, Keegstra K, Jarvis P. An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis. Plant J. 38: 93-106 (2004).

Constantin GD, Krath BN, Macfarlane SA, Nicolaisen M, Elisabeth Johansen I, Lund OS. Virus-induced gene silencing as a tool for functional genomics in a legume species. Plant J. 40: 622-631 (2004).

Contento AL, Kim SJ, Bassham DC. Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation. Plant Physiol. 135: 2330-2347 (2004).

Contento AL, Xiong Y, Bassham DC. Visualization of autophagy in Arabidopsis using the fluorescent dye monodansylcadaverine and a GFP-AtATG8e fusion protein. Plant J. 42: 598-608 (2005).

Conti L, Bradley D. TERMINAL FLOWER1 is a mobile signal controlling Arabidopsis architecture. Plant Cell 19: 767-778 (2007).

Conti L, Price G, O'Donnell E, Schwessinger B, Dominy P, Sadanandom A. Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis. Plant Cell 20: 2894-2908 (2008).

Contreras-Cornejo HA, Macías-Rodriguez L, Cortes-Penagos C, Lopez-Bucio J. Trichoderma virens, a plant beneficial fungus, enhances biomass production and promotes lateral root growth through an auxin-dependent mechanism in Arabidopsis. Plant Physiol. 149: 1579-1592 (2009).

Cook D, Fowler S, Fiehn O, Thomashow MF. A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 101: 15243-15248 (2004).

Cooke JEK, Brown KA, Wu R, Davis JM. Gene expression associated with N-induced shifts in resource allocation in poplar. Plant Cell Environ. 26: 757-770 (2003).

Cookson SJ, Chenu K, Granier C. Day length affects the dynamics of leaf expansion and cellular development in Arabidopsis thaliana partially through floral transition timing. Ann. Bot. (Lond.) 99: 703-711 (2007).

Cookson SJ, Granier C. A dynamic analysis of the shade-induced plasticity in Arabidopsis thaliana rosette leaf development reveals new components of the shade-adaptative response. Ann. Bot. (Lond.) 97: 443-452 (2006).

Cookson SJ, Van Lijsebettens M, Granier C. Correlation between leaf growth variables suggest intrinsic and early controls of leaf size in Arabidopsis thaliana. Plant Cell Environ. 28: 1355-1366 (2005).

Cookson SJ, Williams LE, Miller AJ. Light-dark changes in cytosolic nitrate pools depend on nitrate reductase activity in Arabidopsis leaf cells. Plant Physiol. 138: 1097-1105 (2005).

Cooley MB, Pathirana S, Wu HJ, Kachroo P, Klessig DF. Members of the Arabidopsis HRT/RPP8 family of resistance genes confer resistance to both viral and oomycete pathogens. Plant Cell 12: 663-676 (2000).

Cooper RM, Williams JS. Elemental sulphur as an induced antifungal substance in plant defence. J. Exp. Bot. 55: 1947-1953 (2004).

Copenhaver GP, Keith KC, Preuss D. Tetrad analysis in higher plants. A budding technology. Plant Physiol. 124: 7-16 (2000).

Copenhaver GP, Preuss D. Centromeres in the genomic era: unraveling paradoxes. Curr. Opin. Plant Biol. 2: 104-108 (1999).

Coppinger P, Repetti PP, Day B, Dahlbeck D, Mehlert A, Staskawicz BJ. Overexpression of the plasma membrane-localized NDR1 protein results in enhanced bacterial disease resistance in Arabidopsis thaliana. Plant J. 40: 225-237 (2004).

Corbesier L, Coupland G. Photoperiodic flowering of Arabidopsis: integrating genetic and physiological approaches to characterization of the floral stimulus. Plant Cell Environ. 28: 54-66 (2005).

Corbesier L, Coupland G. The quest for florigen: a review of recent progress. J. Exp. Bot. 57: 3395-3403 (2006).

Corbesier L, Havelange A, Lejeune P, Bernier G, Perilleux C. N content of phloem and xylem exudates during the transition to flowering in Sinapis alba and Arabidopsis thaliana. Plant Cell Environ. 24: 367-375 (2001).

Corbesier L, Kustermans G, Perilleux C, Melzer S, Moritz T, Havelange A, Bernier G. Gibberellins and the floral transition in Sinapis alba. Physiol. Plant. 122: 152-158 (2004).

Corbesier L, Lejeune P, Bernier G. The role of carbohydrates in the induction of flowering in Arabidopsis thaliana: comparison between the wild type and a starchless mutant. Planta 206: 131-137 (1998).

Corbesier L, Prinsen E, Jacqmard A, Lejeune P, Van Onckelen H, Perilleux C, Bernier G. Cytokinin levels in leaves, leaf exudate and shoot apical meristem of Arabidopsis thaliana during floral transition. J. Exp. Bot. 54: 2511-2517 (2003).

Cordier H, Karst F, Berges T. Heterologous expression in Saccharomyces cerevisiae of an Arabidopsis thaliana cDNA encoding mevalonate diphosphate decarboxylase. Plant Mol. Biol. 39: 953-967 (1999).

Corellou F, Camasses A, Ligat L, Peaucellier G, Bouget FY. Atypical regulation of a green lineage-specific B-type cyclin-dependent kinase. Plant Physiol. 138: 1627-1636 (2005).

Corina Vlot A, Liu PP, Cameron RK, Park SW, Yang Y, Kumar D, Zhou F, Padukkavidana T, Gustafsson C, Pichersky E, Klessig DF. Identification of likely orthologs of tobacco salicylic acid-binding protein 2 and their role in systemic acquired resistance in Arabidopsis thaliana. Plant J. 56: 445-456 (2008).

Cornah JE, Germain V, Ward JL, Beale MH, Smith SM. Lipid utilization, gluconeogenesis and seedling growth in Arabidopsis mutants lacking the glyoxylate cycle enzyme malate synthase. J. Biol. Chem. 279: 42916-42923 (2004).

Coruzzi GM, Zhou L. Carbon and nitrogen sensing and signaling in plants: emerging ‘matrix effects’. Curr. Opin. Plant Biol. 4: 247-253 (2001).

Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM. Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation. Plant Cell 10: 741-752 (1998).

Cosio C, Dunand C. Specific functions of individual class III peroxidase genes. J. Exp. Bot. 60: 391-408 (2009).

Cosio C, Martinoia E, Keller C. Hyperaccumulation of cadmium and zinc in Thlaspi caerulescens and Arabidopsis halleri at the leaf cellular level. Plant Physiol. 134: 716-725 (2004).

Cosio C, Vuillemin L, De Meyer M, Kevers C, Penel C, Dunand C. An anionic class III peroxidase from zucchini may regulate hypocotyl elongation through its auxin oxidase activity. Planta 229: 823-836 (2009).

Costa CL, Arruda P, Benedetti CE. An Arabidopsis gene induced by wounding functionally homologous to flavoprotein oxidoreductases. Plant Mol. Biol. 44: 61-71 (2000).

Cotelle V, Meek SE, Provan F, Milne FC, Morrice N, MacKintosh C. 14-3-3s regulate global cleavage of their diverse binding partners in sugar-starved Arabidopsis cells. EMBO J. 19: 2869-2876 (2000).

Coupe SA, Palmer BG, Lake JA, Overy SA, Oxborough K, Woodward FI, Gray JE, Quick WP. Systemic signalling of environmental cues in Arabidopsis leaves. J. Exp. Bot. 57: 329-341 (2006).

Coupe SA, Sinclair BK, Watson LM, Heyes JA, Eason JR. Identification of dehydration-responsive cysteine proteases during post-harvest senescence of broccoli florets. J. Exp. Bot. 54: 1045-1056 (2003).

Coupe SA, Taylor JE, Roberts JA. Characterisation of an mRNA encoding a metallothionein-like protein that accumulates during ethylene-promoted abscission of Sambucus nigra L. leaflets. Planta 197: 442-447 (1995).

Coupe SA, Watson LM, Ryan DJ, Pinkney TT, Eason JR. Molecular analysis of programmed cell death during senescence in Arabidopsis thaliana and Brassica oleracea: cloning broccoli LSD1, Bax inhibitor and serine palmitoyltransferase homologues. J. Exp. Bot. 55: 59-68 (2004).

Courbot M, Willems G, Motte P, Arvidsson S, Roosens N, Saumitou-Laprade P, Verbruggen N. A major quantitative trait locus for cadmium tolerance in Arabidopsis halleri colocalizes with HMA4, a gene encoding a heavy metal ATPase. Plant Physiol. 144: 1052-1065 (2007).

Coursol S, Le Stunff H, Lynch DV, Gilroy S, Assmann SM, Spiegel S. Arabidopsis sphingosine kinase and the effects of phytosphingosine-1-phosphate on stomatal aperture. Plant Physiol. 137: 724-737 (2005).

Cousins AB, Pracharoenwattana I, Zhou W, Smith SM, Badger MR. Peroxisomal malate dehydrogenase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release. Plant Physiol. 148: 786-795 (2008).

Couteau F, Belzile F, Horlow C, Grandjean O, Vezon D, Doutriaux MP. Random chromosome segregation without meiotic arrest in both male and female meiocytes of a dmc1 mutant of Arabidopsis. Plant Cell 11: 1623-1634 (1999).

Couturier J, Montanini B, Martin F, Brun A, Blaudez D, Chalot M. The expanded family of ammonium transporters in the perennial poplar plant. New Phytol. 174: 137-150 (2007).

Covello PS, Reed DW. Functional expression of the extraplastidial Arabidopsis thaliana oleate desaturase gene (FAD2) in Saccharomyces cerevisiae. Plant Physiol. 111: 223-226 (1996).

Covic L, Silva NF, Lew RR. Functional characterization of ARAKIN (ATMEKK1): a possible mediator in an osmotic stress response pathway in higher plants. Biochim. Biophys. Acta 1451: 242-254 (1999).

Covington MF, Panda S, Liu XL, Strayer CA, Wagner DR, Kay SA. Elf3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell 13: 1305-1316 (2001).

Cowl JS, Hartley N, Xie DX, Whitelam GC, Murphy GP, Harberd NP. The PHYC gene of Arabidopsis. Absence of the third intron found in PHYA and PHYB. Plant Physiol. 106: 813-814 (1994).

Cowling RJ, Kamiya Y, Seto H, Harberd NP. Gibberellin dose-response regulation of GA4 gene transcript levels in Arabidopsis. Plant Physiol. 117: 1195-1203 (1998).

Cox MC, Peeters AJ, Voesenek LA. The stimulating effects of ethylene and auxin on petiole elongation and on hyponastic curvature are independent processes in submerged Rumex palustris. Plant Cell Environ. 29: 282-290 (2006).

Craciun A, Jacobs M, Vauterin M. Arabidopsis loss-of-function mutant in the lysine pathway points out complex regulation mechanisms. FEBS Lett. 487: 234-238 (2000).

Craciun AR, Courbot M, Bourgis F, Salis P, Saumitou-Laprade P, Verbruggen N. Comparative cDNA-AFLP analysis of Cd-tolerant and -sensitive genotypes derived from crosses between the Cd hyperaccumulator Arabidopsis halleri and Arabidopsis lyrata ssp. petraea. J. Exp. Bot. 57: 2967-2983 (2006).

Craft J, Samalova M, Baroux C, Townley H, Martinez A, Jepson I, Tsiantis M, Moore I. New pOp/LhG4 vectors for stringent glucocorticoid-dependent transgene expression in Arabidopsis. Plant J. 41: 899-918 (2005).

Craig A, Ewan R, Mesmar J, Gudipati V, Sadanandom A. E3 ubiquitin ligases and plant innate immunity. J. Exp. Bot. 60: 1123-1132 (2009).

Crawford NM. Mechanisms for nitric oxide synthesis in plants. J. Exp. Bot. 57: 471-478 (2006).

Crawford NM, Davis RW. Molecular analysis of nitrate regulation of nitrate reductase in squash and Arabidopsis. In "Molecular and Genetic Aspects of Nitrate Assimilation" (JL Wray, JR Kinghorn eds) Oxford Science Publications, Oxford, pp. 328-337 (1989).

Crawford NM, Glass ADM. Molecular and physiological aspects of nitrate uptake in plants. Trends Plant Sci. 3: 389-395 (1998).

Creff A, Leonard B, Desnos T. Targeted Ds-tagging strategy generates high allelic diversity at the Arabidopsis HY2 locus. Plant Mol. Biol. 61: 603-613 (2006).

Cremer F, Coupland G. Distinct photoperiodic responses are conferred by the same genetic pathway in Arabidopsis and in rice. Trends Plant Sci. 8: 405-407 (2003).

Cremer F, Lonnig WE, Saedler H, Huijser P. The delayed terminal flower phenotype is caused by a conditional mutation in the centroradialis gene of snapdragon. Plant Physiol. 126: 1031-1041 (2001).

Crespo JL, Diaz-Troya S, Florencio FJ. Inhibition of target of rapamycin signaling by rapamycin in the unicellular green alga Chlamydomonas reinhardtii. Plant Physiol. 139: 1736-1749 (2005).

Crete P, Caboche M, Meyer C. Nitrite reductase expression is regulated at the post-transcriptional level by the nitrogen source in Nicotiana plumbaginifolia and Arabidopsis thaliana. Plant J. 11: 625-634 (1997).

Crichton PG, Affourtit C, Albury MS, Carre JE, Moore AL. Constitutive activity of Sauromatum guttatum alternative oxidase in Schizosaccharomyces pombe implicates residues in addition to conserved cysteines in alpha-keto acid activation. FEBS Lett. 579: 331-336 (2005).

Criqui MC, De Almeida Engler J, Camasses A, Capron A, Parmentier Y, Inze D, Genschik P. Molecular characterization of plant ubiquitin-conjugating enzymes belonging to the UbcP4/E2-C/UBCx/UbcH10 gene family. Plant Physiol. 130: 1230-1240 (2002).

Critchley JH, Zeeman SC, Takaha T, Smith AM, Smith SM. A critical role for disproportionating enzyme in starch breakdown is revealed by a knock-out mutation in Arabidopsis. Plant J. 26: 89-100 (2001).

Crombie HJ, Chengappa S, Jarman C, Sidebottom C, Reid JS. Molecular characterisation of a xyloglucan oligosaccharide-acting alpha-D-xylosidase from nasturtium (Tropaeolum majus L.) cotyledons that resembles plant 'apoplastic' alpha-D-glucosidases. Planta 214: 406-413 (2002).

Crosatti C, Polverino de Laureto P, Bassi R, Cattivelli L. The interaction between cold and light controls the expression of the cold-regulated barley gene cor14b and the accumulation of the corresponding protein. Plant Physiol. 119: 671-680 (1999).

Cross JM, von Korff M, Altmann T, Bartzetko L, Sulpice R, Gibon Y, Palacios N, Stitt M. Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions. Plant Physiol. 142: 1574-1588 (2006).

Crossley SJ, Greenland AJ, Dickinson HG. The characterisation of tapetum-specific cDNAs isolated from a Lilium henryi L. meiocyte subtractive cDNA library. Planta 196: 523-529 (1995).

Crowell DN, Huizinga DH, Deem AK, Trobaugh C, Denton R, Sen SE. Arabidopsis thaliana plants possess a specific farnesylcysteine lyase that is involved in detoxification and recycling of farnesylcysteine. Plant J. 50: 839-847 (2007).

Crowell DN, Kennedy M. Identification and functional expression in yeast of a prenylcysteine alpha-carboxyl methyltransferase gene from Arabidopsis thaliana. Plant Mol. Biol. 45: 469-476 (2001).

Crowell EF, Bischoff V, Desprez T, Rolland A, Stierhof YD, Schumacher K, Gonneau M, Hofte H, Vernhettes S. Pausing of Golgi bodies on microtubules regulates secretion of cellulose synthase complexes in Arabidopsis. Plant Cell 21: 1141-1154 (2009).

Cruz-Hernandez A, Gomez-Lim MA. Alternative oxidase from mango (Mangifera indica, L.) is differentially regulated during fruit ripening. Planta 197: 569-576 (1995).

Cruz-Ortega R, Cushman JC, Ownby JD. cDNA clones encoding 1,3-beta-glucanase and a fimbrin-like cytoskeletal protein are induced by Al toxicity in wheat roots. Plant Physiol. 114: 1453-1460 (1997).

Cruz-Ramirez A, Lopez-Bucio J, Ramirez-Pimentel G, Zurita-Silva A, Sanchez-Calderon L, Ramirez-Chavez E, Gonzalez-Ortega E, Herrera-Estrella L. The xipotl mutant of Arabidopsis reveals a critical role for phospholipid metabolism in root system development and epidermal cell integrity. Plant Cell 16: 2020-2034 (2004).

Cuevas JC, Lopez-Cobollo R, Alcazar R, Zarza X, Koncz C, Altabella T, Salinas J, Tiburcio AF, Ferrando A. Putrescine is involved in Arabidopsis freezing tolerance and cold acclimation by regulating ABA levels in response to low temperature. Plant Physiol. 148: 1094-1105 (2008).

Cui H, Benfey PN. Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root. Plant J. 58: 1016-1027 (2009).

Cui J, Jander G, Racki LR, Kim PD, Pierce NE, Ausubel FM. Signals involved in Arabidopsis resistance to Trichoplusia ni caterpillars induced by virulent and avirulent strains of the phytopathogen Pseudomonas syringae. Plant Physiol. 129: 551-564 (2002).

Cui X, Fan B, Scholz J, Chen Z. Roles of Arabidopsis cyclin-dependent kinase C complexes in cauliflower mosaic virus infection, plant growth, and development. Plant Cell 19: 1388-1402 (2007).

Cui XG, Hao FS, Chen H, Cai JH, Chen J, Wang XC. Isolation and expression of an aquaporin-like gene VfPIP1 in Vicia faba. Prog. Nat. Sci. 15: 496-501 (2005).

Cuin TA, Shabala S. Compatible solutes reduce ROS-induced potassium efflux in Arabidopsis roots. Plant Cell Environ. 30: 875-885 (2007).

Culligan K, Tissier A, Britt A. ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thaliana. Plant Cell 16: 1091-1104 (2004).

Culligan KM, Britt AB. Both ATM and ATR promote the efficient and accurate processing of programmed meiotic double-strand breaks. Plant J. 55: 629-638 (2008).

Culligan KM, Hays JB. DNA mismatch repair in plants. An Arabidopsis thaliana gene that predicts a protein belonging to the MSH2 subfamily of eukaryotic MutS homologs. Plant Physiol. 115: 833-839 (1997).

Culligan KM, Hays JB. Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA. Plant Cell 12: 991-1002 (2000).

Cuming AC, Cho SH, Kamisugi Y, Graham H, Quatrano RS. Microarray analysis of transcriptional responses to abscisic acid and osmotic, salt, and drought stress in the moss, Physcomitrella patens. New Phytol. 176: 275-287 (2007).

Cummins I, Landrum M, Steel PG, Edwards R. Structure activity studies with xenobiotic substrates using carboxylesterases isolated from Arabidopsis thaliana. Phytochemistry 68: 811-818 (2007).

Cunillera N, Boronat A, Ferrer A. Spatial and temporal patterns of GUS expression directed by 5' regions of the Arabidopsis thaliana farnesyl diphosphate synthase genes FPS1 and FPS2. Plant Mol. Biol. 44: 747-758 (2000).

Cunnac S, Wilson A, Nuwer J, Kirik A, Baranage G, Mudgett MB. A conserved carboxylesterase is a SUPPRESSOR OF AVRBST-ELICITED RESISTANCE in Arabidopsis. Plant Cell 19: 688-705 (2007).

Curaba J, Herzog M, Vachon G. GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1. Plant J. 33: 305-317 (2003).

Curaba J, Moritz T, Blervaque R, Parcy F, Raz V, Herzog M, Vachon G. AtGA3ox2, a key gene responsible for bioactive gibberellin biosynthesis, is regulated during embryogenesis by LEAFY COTYLEDON2 and FUSCA3 in Arabidopsis. Plant Physiol. 136: 3660-3669 (2004).

Curi GC, Chan RL, Gonzalez DH. The leader intron of Arabidopsis thaliana genes encoding cytochrome c oxidase subunit 5c promotes high-level expression by increasing transcript abundance and translation efficiency. J. Exp. Bot. 56: 2563-2571 (2005).

Curie C, Cassin G, Couch D, Divol F, Higuchi K, Le Jean M, Misson J, Schikora A, Czernic P, Mari S. Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters. Ann. Bot. (Lond.) 103: 1-11 (2009).

Curien G, Dumas R, Douce R. Nucleotide sequence and characterization of a cDNA encoding the acetohydroxy acid isomeroreductase from Arabidopsis thaliana. Plant Mol. Biol. 21: 717-722 (1993).

Curien G, Dumas R, Ravanel S, Douce R. Characterization of an Arabidopsis thaliana cDNA encoding an S-adenosylmethionine-sensitive threonine synthase. Threonine synthase from higher plants. FEBS Lett. 390: 85-90 (1996).

Curien G, Job D, Douce R, Dumas R. Allosteric activation of Arabidopsis threonine synthase by S-adenosylmethionine. Biochemistry 37: 13212-13221 (1998).

Curien G, Laurencin M, Robert-Genthon M, Dumas R. Allosteric monofunctional aspartate kinases from Arabidopsis. FEBS J. 274: 164-176 (2007).

Curien G, Ravanel S, Dumas R. A kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana. Eur. J. Biochem. 270: 4615-4627 (2003).

Curien G, Ravanel S, Robert M, Dumas R. Identification of six novel allosteric effectors of Arabidopsis thaliana aspartate kinase-homoserine dehydrogenase isoforms. Physiological context sets the specificity. J. Biol. Chem. 280: 41178-41183 (2005).

Curioni PMG, Reidy B, Flura T, Vogeli-Lange R, Nosberger J, Hartwig UA. Increased abundance of MTD1 and MTD2 mRNAs in nodules of decapitated Medicago truncatula. Plant Mol. Biol. 44: 477-485 (2000).

Curtis IS, Hanada A, Yamaguchi S, Kamiya Y. Modification of plant architecture through the expression of GA 2-oxidase under the control of an estrogen inducible promoter in Arabidopsis thaliana L. Planta 222: 957-967 (2005).

Curtis MD, Grossniklaus U. A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462-469 (2003).

Curtis MJ, Belcram K, Bollmann SR, Tominey CM, Hoffman PD, Mercier R, Hays JB. Reciprocal chromosome translocation associated with tDNA-insertion mutation in Arabidopsis: genetic and cytological analyses of consequences for gametophyte development and for construction of doubly mutant lines. Planta 229: 731-745 (2009).

Cushing DA, Forsthoefel NR, Gestaut DR, Vernon DM. Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. Planta 221: 424-436 (2005).

Czako M, Marton L. The herpes simplex virus thymidine kinase gene as a conditional negative-selection marker gene in Arabidopsis thaliana. Plant Physiol. 104: 1067-1071 (1994).

Czarnecka-Verner E, Yuan CX, Scharf KD, Englich G, Gurley WB. Plants contain a novel multi-member class of heat shock factors without transcriptional activator potential. Plant Mol. Biol. 43: 459-471 (2000).

Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK. Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J. 38: 366-379 (2004).

Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139: 5-17 (2005).

Czempinski K, Zimmermann S, Ehrhardt T, Muller-Rober B. New structure and function in plant K+ channels: KCO1, an outward rectifier with a steep Ca2+ dependency. EMBO J. 16: 2565-2575 (1997).

D'Angelo C, Weinl S, Batistic O, Pandey GK, Cheong YH, Schultke S, Albrecht V, Ehlert B, Schulz B, Harter K, Luan S, Bock R, Kudla J. Alternative complex formation of the Ca(2+)-regulated protein kinase CIPK1 controls abscisic acid-dependent and independent stress responses in Arabidopsis. Plant J. 48: 857-872 (2006).

D'Auria JC, Chen F, Pichersky E. Characterization of an acyltransferase capable of synthesizing benzylbenzoate and other volatile esters in flowers and damaged leaves of Clarkia breweri. Plant Physiol. 130: 466-476 (2002).

D'Auria JC, Gershenzon J. The secondary metabolism of Arabidopsis thaliana: growing like a weed. Curr. Opin. Plant Biol. 8: 308-316 (2005).

D'Erfurth I, Cosson V, Eschstruth A, Lucas H, Kondorosi A, Ratet P. Efficient transposition of the Tnt1 tobacco retrotransposon in the model legume Medicago truncatula. Plant J. 34: 95-106 (2003).

Da Costa M, Bach L, Landrieu I, Bellec Y, Catrice O, Brown S, De Veylder L, Lippens G, Inze D, Faure JD. Arabidopsis PASTICCINO2 is an antiphosphatase involved in regulation of cyclin-dependent kinase A. Plant Cell 18: 1426-1437 (2006).

da Costa-Nunes JA, Bhatt AM, O'Shea S, West CE, Bray CM, Grossniklaus U, Dickinson HG. Characterization of the three Arabidopsis thaliana RAD21 cohesins reveals differential responses to ionizing radiation. J. Exp. Bot. 57: 971-983 (2006).

Dafny-Yelin M, Tzfira T, Vainstein A, Adam Z. Non-redundant functions of sHSP-CIs in acquired thermotolerance and their role in early seed development in Arabidopsis. Plant Mol. Biol. 67: 363-373 (2008).

Dahan J, Etienne P, Petitot AS, Houot V, Blein JP, Suty L. Cryptogein affects expression of alpha3, alpha6 and beta1 20S proteasome subunits encoding genes in tobacco. J. Exp. Bot. 52: 1947-1948 (2001).

Dahl M, Meskiene I, Bogre L, Ha DT, Swoboda I, Hubmann R, Hirt H, Heberle-Bors E. The D-type alfalfa cyclin gene cycMs4 complements G1 cyclin-deficient yeast and is induced in the G1 phase of the cell cycle. Plant Cell 7: 1847-1857 (1995).

Dahnhardt D, Falk J, Appel J, van der Kooij TAW, Schulz-Friedrich R, Krupinska K. The hydroxyphenylpyruvate dioxygenase from Synechocystis sp PCC 6803 is not required for plastoquinone biosynthesis. FEBS Lett. 523: 177-181 (2002).

Dai N, Schaffer A, Petreikov M, Shahak Y, Giller Y, Ratner K, Levine A, Granot D. Overexpression of Arabidopsis hexokinase in tomato plants inhibits growth, reduces photosynthesis, and induces rapid senescence. Plant Cell 11: 1253-1266 (1999).

Dai X, Xu Y, Ma Q, Xu W, Wang T, Xue Y, Chong K. Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiol. 143: 1739-1751 (2007).

Dai Y, Wang H, Li B, Huang J, Liu X, Zhou Y, Mou Z, Li J. Increased expression of MAP KINASE KINASE7 causes deficiency in polar auxin transport and leads to plant architectural abnormality in Arabidopsis. Plant Cell 18: 308-320 (2006).

Dall'osto L, Caffarri S, Bassi R. A mechanism of nonphotochemical energy dissipation, independent from PsbS, revealed by a conformational change in the antenna protein CP26. Plant Cell 17: 1217-1232 (2005).

Dall'Osto L, Cazzaniga S, North H, Marion-Poll A, Bassi R. The Arabidopsis aba4-1 mutant reveals a specific function for neoxanthin in protection against photooxidative stress. Plant Cell 19: 1048-1064 (2007).

Dall'osto L, Fiore A, Cazzaniga S, Giuliano G, Bassi R. Different roles of alpha- and beta-branch xanthophylls in photosystem assembly and photoprotection. J. Biol. Chem. 282: 35056-35068 (2007).

Damari-Weissler H, Ginzburg A, Gidoni D, Mett A, Krassovskaya I, Weber AP, Belausov E, Granot D. Spinach SoHXK1 is a mitochondria-associated hexokinase. Planta 226: 1053-1058 (2007).

Dammann C, Ichida A, Hong B, Romanowsky SM, Hrabak EM, Harmon AC, Pickard BG, Harper JF. Subcellular targeting of nine calcium-dependent protein kinase isoforms from Arabidopsis. Plant Physiol. 132: 1840-1848 (2003).

Damme DV, Bouget FY, Poucke KV, Inze D, Geelen D. Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins. Plant J. 40: 386-398 (2004).

Dan H, Yang G, Zheng ZL. A negative regulatory role for auxin in sulphate deficiency response in Arabidopsis thaliana. Plant Mol. Biol. 63: 221-235 (2007).

Dangl M, Brosch G, Haas H, Loidl P, Lusser A. Comparative analysis of HD2 type histone deacetylases in higher plants. Planta 213: 280-285 (2001).

Dangoor I, Peled-Zehavi H, Levitan A, Pasand O, Danon A. A small family of chloroplast atypical thioredoxins. Plant Physiol. 149: 1240-1250 (2009).

Daniell H, Dhingra A. Multigene engineering: dawn of an exciting new era in biotechnology. Curr. Opin. Biotechnol. 13: 136-141 (2002).

Daniels MJ, Mirkov TE, Chrispeels MJ. The plasma membrane of Arabidopsis thaliana contains a mercury-insensitive aquaporin that is a homolog of the tonoplast water channel protein TIP. Plant Physiol. 106: 1325-1333 (1994).

Danilevskaya ON, Hermon P, Hantke S, Muszynski MG, Kollipara K, Ananiev EV. Duplicated fie genes in maize: expression pattern and imprinting suggest distinct functions. Plant Cell 15: 425-438 (2003).

Danon A, Coll NS, Apel K. Cryptochrome-1-dependent execution of programmed cell death induced by singlet oxygen in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 103: 17036-17041 (2006).

Danon A, Miersch O, Felix G, Camp RG, Apel K. Concurrent activation of cell death-regulating signaling pathways by singlet oxygen in Arabidopsis thaliana. Plant J. 41: 68-80 (2005).

Dany AL, Douki T, Triantaphylides C, Cadet J. Repair of the main UV-induced thymine dimeric lesions within Arabidopsis thaliana DNA: evidence for the major involvement of photoreactivation pathways. J. Photochem. Photobiol. B. 65: 127-135 (2001).

Danyluk J, Kane NA, Breton G, Limin AE, Fowler DB, Sarhan F. TaVRT-1, a putative transcription factor associated with vegetative to reproductive transition in cereals. Plant Physiol. 132: 1849-1860 (2003).

Daram P, Brunner S, Rausch C, Steiner C, Amrhein N, Bucher M. Pht2;1 encodes a low-affinity phosphate transporter from Arabidopsis. Plant Cell 11: 2153-2166 (1999).

Darrah C, Taylor BL, Edwards KD, Brown PE, Hall A, McWatters HG. Analysis of phase of LUCIFERASE expression reveals novel circadian quantitative trait loci in Arabidopsis. Plant Physiol. 140: 1464-1474 (2006).

Das S, Hussain A, Bock C, Keller WA, Georges F. Cloning of Brassica napus phospholipase C2 (BnPLC2), phosphatidylinositol 3-kinase (BnVPS34) and phosphatidylinositol synthase1 (BnPtdIns S1)--comparative analysis of the effect of abiotic stresses on the expression of phosphatidylinositol signal … Planta 220: 777-784 (2005).

Daschner K, Couee I, Binder S. The mitochondrial isovaleryl-coenzyme A dehydrogenase of Arabidopsis oxidizes intermediates of leucine and valine catabolism. Plant Physiol. 126: 601-612 (2001).

Daschner K, Thalheim C, Guha C, Brennicke A, Binder S. In plants a putative isovaleryl-CoA-dehydrogenase is located in mitochondria. Plant Mol. Biol. 39: 1275-1282 (1999).

Datta S, Hettiarachchi GH, Deng XW, Holm M. Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. Plant Cell 18: 70-84 (2006).

Datta S, Johansson H, Hettiarachchi C, Irigoyen ML, Desai M, Rubio V, Holm M. LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-box protein involved in light-dependent development and gene expression, undergoes COP1-mediated ubiquitination. Plant Cell 20: 2324-2338 (2008).

Datta SK. Recent developments in transgenics for abiotic stress tolerance in rice. JIRCAS Working Report No.23, "Genetic Engineering of Crop Plants for Abiotic Stress" (Iwanaga M, ed.) p. 43-53 (2002).

Daugherty CJ, Rooney MF, Miller PW, Ferl RJ. Molecular organization and tissue-specific expression of an Arabidopsis 14-3-3 gene. Plant Cell 8: 1239-1248 (1996).

Davenport RJ, Munoz-Mayor A, Jha D, Essah PA, Rus A, Tester M. The Na+ transporter AtHKT1;1 controls retrieval of Na+ from the xylem in Arabidopsis. Plant Cell Environ. 30: 497-507 (2007).

Davey MW, Bauw G, Montagu MV. Analysis of ascorbate in plant tissues by high-performance capillary zone electrophoresis. Anal. Biochem. 239: 8-19 (1996).

Davey MW, Bauw G, Van Montagu M. Simultaneous high-performance capillary electrophoresis analysis of the reduced and oxidised forms of ascorbate and glutathione. J. Chromatogr. B. Biomed Sci. Appl. 697: 269-276 (1997).

Davey MW, Gilot C, Persiau G, Ostergaard J, Han Y, Bauw GC, Van Montagu MC. Ascorbate biosynthesis in Arabidopsis cell suspension culture. Plant Physiol. 121: 535-544 (1999).

David Marks M, Betancur L, Gilding E, Chen F, Bauer S, Wenger JP, Dixon RA, Haigler CH. A new method for isolating large quantities of Arabidopsis trichomes for transcriptome, cell wall and other types of analyses. Plant J. 56: 483-492 (2008).

David-Assael O, Saul H, Saul V, Mizrachy-Dagri T, Berezin I, Brook E, Shaul O. Expression of AtMHX, an Arabidopsis vacuolar metal transporter, is repressed by the 5' untranslated region of its gene. J. Exp. Bot. 56: 1039-1047 (2005).

Davidson SE, Smith JJ, Helliwell CA, Poole AT, Reid JB. The pea gene LH encodes ent-kaurene oxidase. Plant Physiol. 134: 1123-1134 (2004).

Davies DR, Bindschedler LV, Strickland TS, Bolwell GP. Production of reactive oxygen species in Arabidopsis thaliana cell suspension cultures in response to an elicitor from Fusarium oxysporum: implications for basal resistance. J. Exp. Bot. 57: 1817-1827 (2006).

Davies GJ, Sheikh MA, Ratcliffe OJ, Coupland G, Furner IJ. Genetics of homology-dependent gene silencing in Arabidopsis; a role for methylation. Plant J. 12: 791-804 (1997).

Davies LM, Harris PJ. Atomic force microscopy of microfibrils in primary cell walls. Planta 217: 283-289 (2003).

Davies RT, Goetz DH, Lasswell J, Anderson MN, Bartel B. IAR3 encodes an auxin conjugate hydrolase from Arabidopsis. Plant Cell 11: 365-376 (1999).

Davies TGE, Coleman JOD. The Arabidopsis thaliana ATP-binding cassette proteins: an emerging superfamily. Plant Cell Environ. 23: 431-443 (2000).

Davis SJ. Integrating hormones into the floral-transition pathway of Arabidopsis thaliana. Plant Cell Environ. 32: 1201-1210 (2009).

Davis SJ, Bhoo SH, Durski AM, Walker JM, Vierstra RD. The heme-oxygenase family required for phytochrome chromophore biosynthesis is necessary for proper photomorphogenesis in higher plants. Plant Physiol. 126: 656-669 (2001).

Davis SJ, Vierstra RD. Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants. Plant Mol. Biol. 36: 521-528 (1998).

Davison PA, Hunter CN, Horton P. Overexpression of beta-carotene hydroxylase enhances stress tolerance in Arabidopsis. Nature 418: 203-206 (2002).

Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, Coutu J, Shulaev V, Schlauch K, Mittler R. Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 17: 268-281 (2005).

Davletova S, Schlauch K, Coutu J, Mittler R. The zinc-finger protein zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 139: 847-856 (2005).

Davuluri GR, Tuinen A, Mustilli AC, Manfredonia A, Newman R, Burgess D, Brummell DA, King SR, Palys J, Uhlig J, Pennings HM, Bowler C. Manipulation of DET1 expression in tomato results in photomorphogenic phenotypes caused by post-transcriptional gene silencing. Plant J. 40: 344-354 (2004).

Day B, Dahlbeck D, Huang J, Chisholm ST, Li D, Staskawicz BJ. Molecular basis for the RIN4 negative regulation of RPS2 disease resistance. Plant Cell 17: 1292-1305 (2005).

Day B, Dahlbeck D, Staskawicz BJ. NDR1 interaction with RIN4 mediates the differential activation of multiple disease resistance pathways in Arabidopsis. Plant Cell 18: 2782-2791 (2006).

Day IS, Reddy AS. Isolation and characterization of two cyclin-like cDNAs from Arabidopsis. Plant Mol. Biol. 36: 451-461 (1998).

Day RC, Herridge RP, Ambrose BA, Macknight RC. Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signalling, and gene expression regulation. Plant Physiol. 148: 1964-1984 (2008).

de Almeida Engler J, De Veylder L, De Groodt R, Rombauts S, Boudolf V, De Meyer B, Hemerly A, Ferreira P, Beeckman T, Karimi M, Hilson P, Inzé D, Engler G. Systematic analysis of cell-cycle gene expression during Arabidopsis development. Plant J. 59: 645-660 (2009).

De Angeli A, Monachello D, Ephritikhine G, Frachisse JM, Thomine S, Gambale F, Barbier-Brygoo H. The nitrate/proton antiporter AtCLCa mediates nitrate accumulation in plant vacuoles. Nature 442: 939-942 (2006).

de Azevedo Souza C, Kim SS, Koch S, Kienow L, Schneider K, McKim SM, Haughn GW, Kombrink E, Douglas CJ. A novel fatty Acyl-CoA Synthetase is required for pollen development and sporopollenin biosynthesis in Arabidopsis. Plant Cell 21: 507-525 (2009).

De Boer AH, Volkov V. Logistics of water and salt transport through the plant: structure and functioning of the xylem. Plant Cell Environ. 26: 87-101 (2003).

de Boer GJ, Testerink C, Pielage G, Nijkamp HJ, Stuitje AR. Sequences surrounding the transcription initiation site of the Arabidopsis enoyl-acyl carrier protein reductase gene control seed expression in transgenic tobacco. Plant Mol. Biol. 39: 1197-1207 (1999).

De Bolle MF, Butaye KM, Goderis IJ, Wouters PF, Jacobs A, Delaure SL, Depicker A, Cammue BP. The influence of matrix attachment regions on transgene expression in Arabidopsis thaliana wild type and gene silencing mutants. Plant Mol. Biol. 63: 533-543 (2007).

de Bruxelles GL, Peacock WJ, Dennis ES, Dolferus R. Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis. Plant Physiol. 111: 381-391 (1996).

De Coninck B, Le Roy K, Francis I, Clerens S, Vergauwen R, Halliday AM, Smith SM, Van Laere A, Van den Ende W. Arabidopsis AtcwINV3 and 6 are not invertases but are fructan exohydrolases (FEHs) with different substrate specificities. Plant Cell Environ. 28: 432-443 (2005).

de Crecy-Lagard V, El Yacoubi B, Diaz de la Garza R, Noiriel A, Hanson AD. Comparative genomics of bacterial and plant folate synthesis and salvage: predictions and validations. BMC Genomics 8: 245 (2007).

de Folter S, Busscher J, Colombo L, Losa A, Angenent GC. Transcript profiling of transcription factor genes during silique development in Arabidopsis. Plant Mol. Biol. 56: 351-366 (2004).

de Folter S, Immink RG, Kieffer M, Parenicova L, Henz SR, Weigel D, Busscher M, Kooiker M, Colombo L, Kater MM, Davies B, Angenent GC. Comprehensive interaction map of the Arabidopsis MADS box transcription factors. Plant Cell 17: 1424-1433 (2005).

de Folter S, Shchennikova AV, Franken J, Busscher M, Baskar R, Grossniklaus U, Angenent GC, Immink RG. A Bsister MADS-box gene involved in ovule and seed development in petunia and Arabidopsis. Plant J. 47: 934-946 (2006).

De Grauwe L, Vriezen WH, Bertrand S, Phillips A, Vidal AM, Hedden P, Van Der Straeten D. Reciprocal influence of ethylene and gibberellins on response-gene expression in Arabidopsis thaliana. Planta 226: 485-498 (2007).

de Jong M, van Breukelen B, Wittink FR, Menke FL, Weisbeek PJ, Van den Ackerveken G. Membrane-associated transcripts in Arabidopsis; their isolation and characterization by DNA microarray analysis and bioinformatics. Plant J. 46: 708-721 (2006).

de Jong M, Wolters-Arts M, Feron R, Mariani C, Vriezen WH. The Solanum lycopersicum auxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development. Plant J. 57: 160-170 (2009).

de Kraker JW, Luck K, Textor S, Tokuhisa JG, Gershenzon J. Two Arabidopsis genes (IPMS1 and IPMS2) encode isopropylmalate synthase, the branchpoint step in the biosynthesis of leucine. Plant Physiol. 143: 970-986 (2007).

de la Fuente JI, Amaya I, Castillejo C, Sanchez-Sevilla JF, Quesada MA, Botella MA, Valpuesta V. The strawberry gene FaGAST affects plant growth through inhibition of cell elongation. J. Exp. Bot. 57: 2401-2411 (2006).

De La Fuente Van Bentem S, Vossen JH, Vermeer JE, De Vroomen MJ, Gadella TW Jr, Haring MA, Cornelissen BJ. The subcellular localization of plant protein phosphatase 5 isoforms is determined by alternative splicing. Plant Physiol. 133: 702-712 (2003).

De la Rosa G, Martinez-Martinez A, Pelayo H, Peralta-Videa JR, Sanchez-Salcido B, Gardea-Torresdey JL. Production of low-molecular weight thiols as a response to cadmium uptake by tumbleweed (Salsola kah). Plant Physiol. Biochem. 43: 491-498 (2005).

de la Torre F, De Santis L, Suarez MF, Crespillo R, Canovas FM. Identification and functional analysis of a prokaryotic-type aspartate aminotransferase: implications for plant amino acid metabolism. Plant J. 46: 414-425 (2006).

de La Torre F, Sampedro J, Zarra I, Revilla G. AtFXG1, an Arabidopsis gene encoding alpha-L-fucosidase active against fucosylated xyloglucan oligosaccharides. Plant Physiol. 128: 247-255 (2002).

De Leo F, Bonade-Bottino MA, Ceci LR, Gallerani R, Jouanin L. Opposite effects on Spodoptera littoralis larvae of high expression level of a trypsin proteinase inhibitor in transgenic plants. Plant Physiol. 118: 997-1004 (1998).

de Leon BG, Zorrilla JM, Rubio V, Dahiya P, Paz-Ares J, Leyva A. Interallelic complementation at the Arabidopsis CRE1 locus uncovers independent pathways for the proliferation of vascular initials and canonical cytokinin signalling. Plant J. 38: 70-79 (2004).

De Leon IP, Sanz A, Hamberg M, Castresana C. Involvement of the Arabidopsis alpha-DOX1 fatty acid dioxygenase in protection against oxidative stress and cell death. Plant J. 29: 61-62 (2002).

de Longevialle AF, Hendrickson L, Taylor NL, Delannoy E, Lurin C, Badger M, Harvey Millar A, Small I. The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana. Plant J. 56: 157-168 (2008).

de Lorenzo L, Merchan F, Laporte P, Thompson R, Clarke J, Sousa C, Crespi M. A novel plant leucine-rich repeat receptor kinase regulates the response of Medicago truncatula roots to salt stress. Plant Cell 21: 668-680 (2009).

De Luca V. Chapter 9. Metabolic Engineering of Crops with the Tryptophan Decarboxylase of Catharanthus roseus. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 179-194 (2000).

De Luca V, Laflamme P. The expanding universe of alkaloid biosynthesis. Curr. Opin. Plant Biol. 4: 225-233 (2001).

De Luca V, St Pierre B. The cell and developmental biology of alkaloid biosynthesis. Trends Plant Sci. 5: 168-173 (2000).

de Martino G, Pan I, Emmanuel E, Levy A, Irish VF. Functional analyses of two tomato APETALA3 genes demonstrate diversification in their roles in regulating floral development. Plant Cell 18: 1833-1845 (2006).

de Meaux J, Goebel U, Pop A, Mitchell-Olds T. Allele-specific assay reveals functional variation in the chalcone synthase promoter of Arabidopsis thaliana that is compatible with neutral evolution. Plant Cell 17: 676-690 (2005).

De Michele R, Vurro E, Rigo C, Costa A, Elviri L, Di Valentin M, Careri M, Zottini M, Sanita di Toppi L, Lo Schiavo F. Nitric oxide is involved in cadmium-induced programmed cell death in Arabidopsis suspension cultures. Plant Physiol. 150: 217-228 (2009).

De Paepe A, De Buck S, Hoorelbeke K, Nolf J, Peck I, Depicker A. High frequency of single-copy T-DNA transformants produced by floral dip in CRE-expressing Arabidopsis plants. Plant J. 59: 517-527 (2009).

De Paepe A, De Grauwe L, Bertrand S, Smalle J, Van der Straeten D. The Arabidopsis mutant eer2 has enhanced ethylene responses in the light. J. Exp. Bot. 56: 2409-2420 (2005).

De Paepe A, Vuylsteke M, Van Hummelen P, Zabeau M, Van Der Straeten D. Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. Plant J. 39: 537-559 (2004).

de Pater S, Pham K, Memelink J, Kijne J. RAP-1 is an Arabidopsis MYC-like R protein homologue, that binds to G-box sequence motifs. Plant Mol. Biol. 34: 169-174 (1997).

De Pino V, Boran M, Norambuena L, Gonzalez M, Reyes F, Orellana A, Moreno S. Complex formation regulates the glycosylation of the reversibly glycosylated polypeptide. Planta 226: 335-345 (2007).

de Reuille PB, Bohn-Courseau I, Ljung K, Morin H, Carraro N, Godin C, Traas J. Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 103: 1627-1632 (2006).

De Rocher EJ, Vargo-Gogola TC, Diehn SH, Green PJ. Direct evidence for rapid degradation of Bacillus thuringiensis toxin mRNA as a cause of poor expression in plants. Plant Physiol. 117: 1445-1461 (1998).

De Ronde JA, Cress WA, Kruger GH, Strasser RJ, Van Staden J. Photosynthetic response of transgenic soybean plants, containing an Arabidopsis P5CR gene, during heat and drought stress. J. Plant Physiol. 161: 1211-1224 (2004).

de Ronde JA, Spreeth MH, Cress WA. Effect of antisense L-delta1-pyrroline-5-carboxylate reductase transgenic soybean plants subjected to osmotic and drought stress. Plant Growth Regul. 32: 13-26 (2000).

De Smet I, Signora L, Beeckman T, Inze D, Foyer CH, Zhang H. An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis. Plant J. 33: 543-555 (2003).

De Smet I, Vanneste S, Inze D, Beeckman T. Lateral root initiation or the birth of a new meristem. Plant Mol. Biol. 60: 871-887 (2006).

De Sutter V, Vanderhaeghen R, Tilleman S, Lammertyn F, Vanhoutte I, Karimi M, Inze D, Goossens A, Hilson P. Exploration of jasmonate signalling via automated and standardized transient expression assays in tobacco cells. Plant J. 44: 1065-1076 (2005).

de Torres M, Mansfield JW, Grabov N, Brown IR, Ammouneh H, Tsiamis G, Forsyth A, Robatzek S, Grant M, Boch J. Pseudomonas syringae effector AvrPtoB suppresses basal defence in Arabidopsis. Plant J. 47: 368-382 (2006).

de Torres Zabala M, Bennett MH, Truman WH, Grant MR. Antagonism between salicylic and abscisic acid reflects early host-pathogen conflict and moulds plant defence responses. Plant J. 59: 375-386 (2009).

De Veylder L, de Almeida Engler J, Burssens S, Manevski A, Lescure B, Van Montagu M, Engler G, Inze D. A new D-type cyclin of Arabidopsis thaliana expressed during lateral root primordia formation. Planta 208: 453-462 (1999).

De Veylder L, Van Montagu M, Inze D. Herbicide safener-inducible gene expression in Arabidopsis thaliana. Plant Cell Physiol. 38: 568-577 (1997).

de Virville JD, Cantrel C, Bousquet AL, Hoffelt M, Tenreiro AM, Pinto VV, Arrabaca JD, Caiveau O, Moreau F, Zachowski A. Homeoviscous and functional adaptations of mitochondrial membranes to growth temperature in soybean seedlings. Plant Cell Environ. 25: 1289-1297 (2002).

De Vos M, Jander G. Choice and no-choice assays for testing the resistance of A. thaliana to chewing insects. J. Vis. Exp. 15 pii: 683 (2008).

De Vos M, Van Zaanen W, Koornneef A, Korzelius JP, Dicke M, Van Loon LC, Pieterse CM. Herbivore-induced resistance against microbial pathogens in Arabidopsis. Plant Physiol. 142: 352-363 (2006).

de Zelicourt A, Letousey P, Thoiron S, Campion C, Simoneau P, Elmorjani K, Marion D, Simier P, Delavault P. Ha-DEF1, a sunflower defensin, induces cell death in Orobanche parasitic plants. Planta 226: 591-600 (2007).

Deal RB, Kandasamy MK, McKinney EC, Meagher RB. The nuclear actin-related protein ARP6 is a pleiotropic developmental regulator required for the maintenance of FLOWERING LOCUS C expression and repression of flowering in Arabidopsis. Plant Cell 17: 2633-2646 (2005).

Dean G, Casson S, Lindsey K. KNAT6 gene of Arabidopsis is expressed in roots and is required for correct lateral root formation. Plant Mol. Biol. 54: 71-84 (2004).

Dean JV, Delaney SP. Metabolism of salicylic acid in wild-type, ugt74f1 and ugt74f2 glucosyltransferase mutants of Arabidopsis thaliana. Physiol. Plant. 132: 417-425 (2008).

Dean PJ, Siwiec T, Waterworth WM, Schlögelhofer P, Armstrong SJ, West CE. A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis. Plant J. 58: 791-802 (2009).

Dean Rider S Jr, Henderson JT, Jerome RE, Edenberg HJ, Romero-Severson J, Ogas J. Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis. Plant J. 35: 33-43 (2003).

Debeaujon I, Nesi N, Perez P, Devic M, Grandjean O, Caboche M, Lepiniec L. Proanthocyanidin-accumulating cells in Arabidopsis testa: regulation of differentiation and role in seed development. Plant Cell 15: 2514-2531 (2003).

Debeaujon I, Peeters AJ, Leon-Kloosterziel KM, Koornneef M. The transparent testa12 gene of Arabidopsis encodes a multidrug secondary transporter-like protein required for flavonoid sequestration in vacuoles of the seed coat endothelium. Plant Cell 13: 853-872 (2001).

Deblasio SL, Luesse DL, Hangarter RP. A plant-specific protein essential for blue-light-induced chloroplast movements. Plant Physiol. 139: 101-114 (2005).

DeBlasio SL, Mullen JL, Luesse DR, Hangarter RP. Phytochrome modulation of blue light-induced chloroplast movements in Arabidopsis. Plant Physiol. 133: 1471-1479 (2003).

Debono A, Yeats TH, Rose JK, Bird D, Jetter R, Kunst L, Samuels L. Arabidopsis LTPG is a glycosylphosphatidylinositol-anchored lipid transfer protein required for export of lipids to the plant surface. Plant Cell 21: 1230-1238 (2009).

Dechaine JM, Gardner G, Weinig C. Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation. Plant Cell Environ. 32: 1297-1309 (2009).

Decreux A, Thomas A, Spies B, Brasseur R, Cutsem PV, Messiaen J. In vitro characterization of the homogalacturonan-binding domain of the wall-associated kinase WAK1 using site-directed mutagenesis. Phytochemistry 67: 1068-1079 (2006).

Dedeurwaerder S, Menu-Bouaouiche L, Mareck A, Lerouge P, Guerineau F. Activity of an atypical Arabidopsis thaliana pectin methylesterase. Planta 229: 311-321 (2009).

Deeken R, Ache P, Kajahn I, Klinkenberg J, Bringmann G, Hedrich R. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J. 55: 746-759 (2008).

Deeken R, Geiger D, Fromm J, Koroleva O, Ache P, Langenfeld-Heyser R, Sauer N, May ST, Hedrich R. Loss of the AKT2/3 potassium channel affects sugar loading into the phloem of Arabidopsis. Planta 216: 334-344 (2002).

Deeken R, Ivashikina N, Czirjak T, Philippar K, Becker D, Ache P, Hedrich R. Tumour development in Arabidopsis thaliana involves the Shaker-like K+ channels AKT1 and AKT2/3. Plant J. 34: 778-787 (2003).

Deeken R, Kaldenhoff R. Light-repressible receptor protein kinase: a novel photo-regulated gene from Arabidopsis thaliana. Planta 202: 479-486 (1997).

Deeken R, Sanders C, Ache P, Hedrich R. Developmental and light-dependent regulation of a phloem-localised K+ channel of Arabidopsis thaliana. Plant J. 23: 285-290 (2000).

Degenhardt J, Larsen PB, Howell SH, Kochian LV. Aluminum resistance in the Arabidopsis mutant alr-104 is caused by an aluminum-induced increase in rhizosphere pH. Plant Physiol. 117: 19-27 (1998).

Degenhardt RF, Bonham-Smith PC. Transcript profiling demonstrates absence of dosage compensation in Arabidopsis following loss of a single RPL23a paralog. Planta 228: 627-640 (2008).

Dehesh K, Tai H, Edwards P, Byrne J, Jaworski JG. Overexpression of 3-ketoacyl-acyl-carrier protein synthase IIIs in plants reduces the rate of lipid synthesis. Plant Physiol. 125: 1103-1114 (2001).

Deikman J, Ulrich M. A novel cytokinin-resistant mutant of Arabidopsis with abbreviated shoot development. Planta 195: 440-449 (1995).

Dekkers BJ, Schuurmans JA, Smeekens SC. Interaction between sugar and abscisic acid signalling during early seedling development in Arabidopsis. Plant Mol. Biol. 67: 151-167 (2008).

Dekkers BJ, Schuurmans JA, Smeekens SC. Glucose delays seed germination in Arabidopsis thaliana. Planta 218: 579-588 (2004).

del Campillo E, Abdel-Aziz A, Crawford D, Patterson SE. Root cap specific expression of an endo-beta-1,4-D-glucanase (cellulase): a new marker to study root development in Arabidopsis. Plant Mol. Biol. 56: 309-323 (2004).

Del Pozo JC, Boniotti MB, Gutierrez C. Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light. Plant Cell 14: 3057-3071 (2002).

Del Pozo JC, Diaz-Trivino S, Cisneros N, Gutierrez C. The balance between cell division and endoreplication depends on E2FC-DPB, transcription factors regulated by the ubiquitin-SCFSKP2A pathway in Arabidopsis. Plant Cell 18: 2224-2235 (2006).

del Pozo JC, Lopez-Matas MA, Ramirez-Parra E, Gutierrez C. Hormonal control of the plant cell cycle. Physiol. Plant. 123: 173-183 (2005).

Delage L, Duchene AM, Zaepfel M, Marechal-Drouard L. The anticodon and the D-domain sequences are essential determinants for plant cytosolic tRNAVal import into mitochondria. Plant J. 34: 623-633 (2003).

Delaney KJ, Xu R, Zhang J, Li QQ, Yun KY, Falcone DL, Hunt AG. Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. Plant Physiol. 140: 1507-1521 (2006).

Delarue M, Santoni V, Caboche M, Bellini C. Cristal mutations in Arabidopsis confer a genetically heritable, recessive, hyperhydric phenotype. Planta 202: 51-61 (1997).

Delatte T, Trevisan M, Parker ML, Zeeman SC. Arabidopsis mutants Atisa1 and Atisa2 have identical phenotypes and lack the same multimeric isoamylase, which influences the branch point distribution of amylopectin during starch synthesis. Plant J. 41: 815-830 (2005).

Delavault P, Estabrook E, Albrecht H, R Wrobel, Yoder JI. Host-root exudates increase gene expression of asparagine synthetase in the roots of a hemiparasitic plant Triphysaria versicolor (Scrophulariaceae). Gene 222: 155-162 (1998).

Delessert C, Kazan K, Wilson IW, Van Der Straeten D, Manners J, Dennis ES, Dolferus R. The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis. Plant J. 43: 745-757 (2005).

Delgado IJ, Wang Z, de Rocher A, Keegstra K, Raikhel NV. Cloning and characterization of AtRGP1. A reversibly autoglycosylated Arabidopsis protein implicated in cell wall biosynthesis. Plant Physiol. 116: 1339-1350 (1998).

Delgado-Benarroch L, Causier B, Weiss J, Egea-Cortines M. FORMOSA controls cell division and expansion during floral development in Antirrhinum majus. Planta 229: 1219-1229 (2009).

Delhaize E. A metal-accumulator mutant of Arabidopsis thaliana. Plant Physiol. 111: 849-855 (1996).

Delhaize E, Gruber BD, Pittman JK, White RG, Leung H, Miao Y, Jiang L, Ryan PR, Richardson AE. A role for the AtMTP11 gene of Arabidopsis in manganese transport and tolerance. Plant J. 51: 198-210 (2007).

Delhaize E, Kataoka T, Hebb DM, White RG, Ryan PR. Genes encoding proteins of the cation diffusion facilitator family that confer manganese tolerance. Plant Cell 15: 1131-1142 (2003).

DeLille JM, Sehnke PC, Ferl RJ. The Arabidopsis 14-3-3 family of signaling regulators. Plant Physiol. 126: 35-38 (2001).

DeLisle AJ. RNA-binding protein from Arabidopsis. Plant Physiol. 102: 313-314 (1993).

Delk NA, Johnson KA, Chowdhury NI, Braam J. CML24, regulated in expression by diverse stimuli, encodes a potential Ca2+ sensor that functions in responses to abscisic acid, daylength, and ion stress. Plant Physiol. 139: 240-253 (2005).

Delker C, Zolman BK, Miersch O, Wasternack C. Jasmonate biosynthesis in Arabidopsis thaliana requires peroxisomal beta-oxidation enzymes - additional proof by properties of pex6 and aim1. Phytochemistry 68: 1642-1650 (2007).

Della Mea M, Caparros-Ruiz D, Claparols I, Serafini-Fracassini D, Rigau J. AtPng1p. The first plant transglutaminase. Plant Physiol. 135: 2046-2054 (2004).

Dellagi A, Rigault M, Segond D, Roux C, Kraepiel Y, Cellier F, Briat JF, Gaymard F, Expert D. Siderophore-mediated upregulation of Arabidopsis ferritin expression in response to Erwinia chrysanthemi infection. Plant J. 43: 262-272 (2005).

Dellapenna D. Progress in the dissection and manipulation of vitamin E synthesis. Trends Plant Sci. 10: 574-579 (2005).

DellaPenna D. Plant metabolic engineering. Plant Physiol. 125: 160-163 (2001).

Dellapenna D, Pogson BJ. Vitamin synthesis in plants: tocopherols and carotenoids. Annu. Rev. Plant Biol. 57: 711-738 (2006).

Delledonne M, Xia Y, Dixon RA, Lamb C. Nitric oxide functions as a signal in plant disease resistance. Nature 394: 585-588 (1998).

Delmas F, Seveno M, Northey JG, Hernould M, Lerouge P, McCourt P, Chevalier C. The synthesis of the rhamnogalacturonan II component 3-deoxy-D-manno-2-octulosonic acid (Kdo) is required for pollen tube growth and elongation. J. Exp. Bot. 59: 2639-2647 (2008).

Delseny M. Towards an accurate sequence of the rice genome. Curr. Opin. Plant Biol. 6: 101-105 (2003).

Delseny M. Re-evaluating the relevance of ancestral shared synteny as a tool for crop improvement. Curr. Opin. Plant Biol. 7: 126-131 (2004).

Delvalle D, Dumez S, Wattebled F, Roldan I, Planchot V, Berbezy P, Colonna P, Vyas D, Chatterjee M, Ball S, Merida A, D'Hulst C. Soluble starch synthase I: a major determinant for the synthesis of amylopectin in Arabidopsis thaliana leaves. Plant J. 43: 398-412 (2005).

Demarsy E, Courtois F, Azevedo J, Buhot L, Lerbs-Mache S. Building-up of the plastid transcriptional machinery during germination and early plant development. Plant Physiol. 142: 993-1003 (2006).

Demarsy E, Fankhauser C. Higher plants use LOV to perceive blue light. Curr. Opin. Plant Biol. 12: 69-74 (2009).

Demchuk ON, Nyporko AIu, Blium IaB. Construction of three-dimensional models of Arabidopsis thaliana FtsZ-proteins on basis of crystal structure of archaebacterial FtsZ-GDP complex. Tsitol. Genet. 40: 10-20 (2006).

Demidchik V, Bowen HC, Maathuis FJ, Shabala SN, Tester MA, White PJ, Davies JM. Arabidopsis thaliana root non-selective cation channels mediate calcium uptake and are involved in growth. Plant J. 32: 799-808 (2002).

Demidchik V, Davenport RJ, Tester M. Nonselective cation channels in plants. Annu. Rev. Plant Biol. 53: 67-107 (2002).

Demidchik V, Essah PA, Tester M. Glutamate activates cation currents in the plasma membrane of Arabidopsis root cells. Planta 219: 167-175 (2004).

Demidchik V, Shang Z, Shin R, Thompson E, Rubio L, Laohavisit A, Mortimer JC, Chivasa S, Slabas AR, Glover BJ, Schachtman DP, Shabala SN, Davies JM. Plant extracellular ATP signalling by plasma membrane NADPH oxidase and Ca2+ channels. Plant J. 58: 903-913 (2009).

Demidchik V, Tester M. Sodium fluxes through nonselective cation channels in the plasma membrane of protoplasts from Arabidopsis roots. Plant Physiol. 128: 379-387 (2002).

Demidov D, Van Damme D, Geelen D, Blattner FR, Houben A. Identification and dynamics of two classes of Aurora-like kinases in Arabidopsis and other plants. Plant Cell 17: 836-848 (2005).

Den Herder G, De Keyser A, De Rycke R, Rombauts S, Van de Velde W, Clemente MR, Verplancke C, Mergaert P, Kondorosi E, Holsters M, Goormachtig S. Seven in absentia proteins affect plant growth and nodulation in Medicago truncatula. Plant Physiol. 148: 369-382 (2008).

Denby K, Gehring C. Engineering drought and salinity tolerance in plants: lessons from genome-wide expression profiling in Arabidopsis. Trends Biotechnol. 23: 547-552 (2005).

Denby KJ, Jason LJ, Murray SL, Last RL. ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways. Plant J. 41: 673-684 (2005).

Denby KJ, Kumar P, Kliebenstein DJ. Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana. Plant J. 38: 473-486 (2004).

Denekamp M, Smeekens SC. Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene. Plant Physiol. 132: 1415-1423 (2003).

Deng W, Liu C, Pei Y, Deng X, Niu L, Cao X. Involvement of the histone acetyltransferase AtHAC1 in the regulation of flowering time via repression of FLOWERING LOCUS C in Arabidopsis. Plant Physiol. 143: 1660-1668 (2007).

Deng W, Luo K, Li D, Zheng X, Wei X, Smith W, Thammina C, Lu L, Li Y, Pei Y. Overexpression of an Arabidopsis magnesium transport gene, AtMGT1, in Nicotiana benthamiana confers Al tolerance. J. Exp. Bot. 57: 4235-4243 (2006).

Deng X, Phillips J, Brautigam A, Engstrom P, Johannesson H, Ouwerkerk PB, Ruberti I, Salinas J, Vera P, Iannacone R, Meijer AH, Bartels D. A homeodomain leucine zipper gene from Craterostigma plantagineum regulates abscisic acid responsive gene expression and physiological responses. Plant Mol. Biol. 61: 469-489 (2006).

Dennison KL, Robertson WR, Lewis BD, Hirsch RE, Sussman MR, Spalding EP. Functions of AKT1 and AKT2 potassium channels determined by studies of single and double mutants of Arabidopsis. Plant Physiol. 127: 1012-1019 (2001).

Dennison KL, Spalding EP. Glutamate-gated calcium fluxes in Arabidopsis. Plant Physiol. 124: 1511-1514 (2000).

Deprost D, Yao L, Sormani R, Moreau M, Leterreux G, Nicolaï M, Bedu M, Robaglia C, Meyer C. The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation. EMBO Rep. 8: 864-870 (2007).

Depuydt S, De Veylder L, Holsters M, Vereecke D. Eternal youth, the fate of developing Arabidopsis leaves upon Rhodococcus fascians infection. Plant Physiol. 149: 1387-1398 (2009).

Depuydt S, Trenkamp S, Fernie AR, Elftieh S, Renou JP, Vuylsteke M, Holsters M, Vereecke D. An integrated genomics approach to define niche establishment by Rhodococcus fascians. Plant Physiol. 149: 1366-1386 (2009).

Derbyshire P, Drea S, Shaw PJ, Doonan JH, Dolan L. Proximal-distal patterns of transcription factor gene expression during Arabidopsis root development. J. Exp. Bot. 59: 235-245 (2008).

DeRidder BP, Dixon DP, Beussman DJ, Edwards R, Goldsbrough PB. Induction of glutathione S-transferases in Arabidopsis by herbicide safeners. Plant Physiol. 130: 1497-1505 (2002).

DeRidder BP, Goldsbrough PB. Organ-specific expression of glutathione S-transferases and the efficacy of herbicide safeners in Arabidopsis. Plant Physiol. 140: 167-175 (2006).

Dervinis C, Clark DG, Barrett JE, Nell TA. Effect of pollination and exogenous ethylene on accumulation of ETR1 homologue transcripts during flower petal abscission in geranium (Pelargonium x hortorum L.H. Bailey). Plant Mol. Biol. 42: 847-856 (2000).

Desbrosses G, Josefsson C, Rigas S, Hatzopoulos P, Dolan L. AKT1 and TRH1 are required during root hair elongation in Arabidopsis. J. Exp. Bot. 54: 781-788 (2003).

Desbrosses-Fonrouge AG, Voigt K, Schroder A, Arrivault S, Thomine S, Kramer U. Arabidopsis thaliana MTP1 is a Zn transporter in the vacuolar membrane which mediates Zn detoxification and drives leaf Zn accumulation. FEBS Lett. 579: 4165-4174 (2005).

Desel C, Hubbermann EM, Schwarz K, Krupinska K. Nitration of gamma-tocopherol in plant tissues. Planta 226: 1311-1322 (2007).

Desfeux C, Clough SJ, Bent AF. Female reproductive tissues are the primary target of Agrobacterium-mediated transformation by the Arabidopsis floral-dip method. Plant Physiol. 123: 895-904 (2000).

Desgagne-Penix I, Eakanunkul S, Coles JP, Phillips AL, Hedden P, Sponsel VM. The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis. Plant J. 41: 231-242 (2005).

Desgagne-Penix I, Sponsel VM. Expression of gibberellin 20-oxidase1 (AtGA20ox1) in Arabidopsis seedlings with altered auxin status is regulated at multiple levels. J. Exp. Bot. 59: 2057-2070 (2008).

Desikan R, A -H -Mackerness S, Hancock JT, Neill SJ. Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol. 127: 159-72 (2001).

Desikan R, Cheung MK, Bright J, Henson D, Hancock JT, Neill SJ. ABA, hydrogen peroxide and nitric oxide signalling in stomatal guard cells. J. Exp. Bot. 55: 205-212 (2004).

Desikan R, Griffiths R, Hancock J, Neill S. A new role for an old enzyme: nitrate reductase-mediated nitric oxide generation is required for abscisic acid-induced stomatal closure in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 99: 16314-16318 (2002).

Desikan R, Hancock JT, Coffey MJ, Neill SJ. Generation of active oxygen in elicited cells of Arabidopsis thaliana is mediated by a NADPH oxidase-like enzyme. FEBS Lett. 382: 213-217 (1996).

Desikan R, Last K, Harrett-Williams R, Tagliavia C, Harter K, Hooley R, Hancock JT, Neill SJ. Ethylene-induced stomatal closure in Arabidopsis occurs via AtrbohF-mediated hydrogen peroxide synthesis. Plant J. 47: 907-916 (2006).

Desikan R, Reynolds A, Hancock JT, Neill SJ. Harpin and hydrogen peroxide both initiate programmed cell death but have differential effects on defence gene expression in Arabidopsis suspension cultures. Biochem. J. 330: 115-20 (1998).

Desimone M, Catoni E, Ludewig U, Hilpert M, Schneider A, Kunze R, Tegeder M, Frommer WB, Schumacher K. A novel superfamily of transporters for allantoin and other oxo derivatives of nitrogen heterocyclic compounds in Arabidopsis. Plant Cell 14: 847-856 (2002).

Despres B, Bouissonnie F, Wu HJ, Gomord V, Guilleminot J, Grellet F, Berger F, Delseny M, Devic M. Three SAC1-like genes show overlapping patterns of expression in Arabidopsis but are remarkably silent during embryo development. Plant J. 34: 293-306 (2003).

Despres C, Chubak C, Rochon A, Clark R, Bethune T, Desveaux D, Fobert PR. The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1. Plant Cell 15: 2181-2191 (2003).

Desprez T, Vernhettes S, Fagard M, Refregier G, Desnos T, Aletti E, Py N, Pelletier S, Hofte H. Resistance against herbicide isoxaben and cellulose deficiency caused by distinct mutations in same cellulose synthase isoform CESA6. Plant Physiol. 128: 482-490 (2002).

Dessau M, Halimi Y, Erez T, Chomsky-Hecht O, Chamovitz DA, Hirsch JA. The Arabidopsis COP9 signalosome subunit 7 is a model PCI domain protein with subdomains involved in COP9 signalosome assembly. Plant Cell 20: 2815-2834 (2008).

Desveaux D, Marechal A, Brisson N. Whirly transcription factors: defense gene regulation and beyond. Trends Plant Sci. 10: 95-102 (2005).

Desvoyes B, Ramirez-Parra E, Xie Q, Chua NH, Gutierrez C. Cell type-specific role of the retinoblastoma/E2F pathway during Arabidopsis leaf development. Plant Physiol. 140: 67-80 (2006).

Dettmer J, Elo A, Helariutta Y. Hormone interactions during vascular development. Plant Mol. Biol. 69: 347-360 (2009).

Dettmer J, Hong-Hermesdorf A, Stierhof YD, Schumacher K. Vacuolar H+-ATPase activity is required for endocytic and secretory trafficking in Arabidopsis. Plant Cell 18: 715-730 (2006).

Dettmer J, Schubert D, Calvo-Weimar O, Stierhof YD, Schmidt R, Schumacher K. Essential role of the V-ATPase in male gametophyte development. Plant J. 41: 117-124 (2005).

Deuschle K, Chaudhuri B, Okumoto S, Lager I, Lalonde S, Frommer WB. Rapid metabolism of glucose detected with FRET glucose nanosensors in epidermal cells and intact roots of Arabidopsis RNA-silencing mutants. Plant Cell 18: 2314-2325 (2006).

Deuschle K, Funck D, Hellmann H, Daschner K, Binder S, Frommer WB. A nuclear gene encoding mitochondrial delta-pyrroline-5-carboxylate dehydrogenase and its potential role in protection from proline toxicity. Plant J. 27: 345-356 (2001).

Devadas SK, Raina R. Preexisting systemic acquired resistance suppresses hypersensitive response-associated cell death in Arabidopsis hrl1 mutant. Plant Physiol. 128: 1234-1244 (2002).

Devaiah BN, Karthikeyan AS, Raghothama KG. WRKY75 transcription factor is a modulator of phosphate acquisition and root development in Arabidopsis. Plant Physiol. 143: 1789-1801 (2007).

Devaiah SP, Pan X, Hong Y, Roth M, Welti R, Wang X. Enhancing seed quality and viability by suppressing phospholipase D in Arabidopsis. Plant J. 50: 950-957 (2007).

Devaiah SP, Roth MR, Baughman E, Li M, Tamura P, Jeannotte R, Welti R, Wang X. Quantitative profiling of polar glycerolipid species from organs of wild-type Arabidopsis and a phospholipase Dalpha1 knockout mutant. Phytochemistry 67: 1907-1924 (2006).

Devic M, Guilleminot J, Debeaujon I, Bechtold N, Bensaude E, Koornneef M, Pelletier G, Delseny M. The BANYULS gene encodes a DFR-like protein and is a marker of early seed coat development. Plant J. 19: 387-398 (1999).

Devlin PF, Kay SA. Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity. Plant Cell 12: 2499-2510 (2000).

Devlin PF, Robson PR, Patel SR, Goosey L, Sharrock RA, Whitelam GC. Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time. Plant Physiol. 119: 909-915 (1999).

Devlin PF, Yanovsky MJ, Kay SA. A genomic analysis of the shade avoidance response in Arabidopsis. Plant Physiol. 133: 1617-1629 (2003).

Devoto A, Ellis C, Magusin A, Chang HS, Chilcott C, Zhu T, Turner JG. Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions. Plant Mol. Biol. 58: 497-513 (2005).

Devoto A, Nieto-Rostro M, Xie D, Ellis C, Harmston R, Patrick E, Davis J, Sherratt L, Coleman M, Turner JG. COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis. Plant J. 32: 457-466 (2002).

Devoto A, Turner JG. Jasmonate-regulated Arabidopsis stress signalling network. Physiol. Plant. 123: 161-172 (2005).

Devoto A, Turner JG. Regulation of jasmonate-mediated plant responses in Arabidopsis. Ann. Bot. (Lond.) 92: 329-337 (2003).

DeWald DB, Torabinejad J, Jones CA, Shope JC, Cangelosi AR, Thompson JE, Prestwich GD, Hama H. Rapid accumulation of phosphatidylinositol 4,5-bisphosphate and inositol 1,4,5-trisphosphate correlates with calcium mobilization in salt-stressed Arabidopsis. Plant Physiol. 126: 759-769 (2001).

DeWitt ND, Hong B, Sussman MR, Harper JF. Targeting of two Arabidopsis H(+)-ATPase isoforms to the plasma membrane. Plant Physiol. 112: 833-844 (1996).

DeWitt ND, Sussman MR. Immunocytological localization of an epitope-tagged plasma membrane proton pump (H(+)-ATPase) in phloem companion cells. Plant Cell 7: 2053-2067 (1995).

Dewitte W, Riou-Khamlichi C, Scofield S, Healy JM, Jacqmard A, Kilby NJ, Murray JA. Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3. Plant Cell 15: 79-92 (2003).

Deyoung BJ, Bickle KL, Schrage KJ, Muskett P, Patel K, Clark SE. The CLAVATA1-related BAM1, BAM2 and BAM3 receptor kinase-like proteins are required for meristem function in Arabidopsis. Plant J. 45: 1-16 (2006).

Dezar CA, Fedrigo GV, Chan RL. The promoter of the sunflower HD-Zip protein gene Hahb4 directs tissue-specific expression and is inducible by water stress, high salt concentrations and ABA. Plant Sci. 169: 447-456 (2005).

Dezar CA, Gago GM, Gonzalez DH, Chan RL. Hahb-4, a sunflower homeobox-leucine zipper gene, is a developmental regulator and confers drought tolerance to Arabidopsis thaliana plants. Transgenic Res. 14: 429-440 (2005).

Dezar CA, Tioni MF, Gonzalez DH, Chan RL. Identification of three MADS-box genes expressed in sunflower capitulum. J. Exp. Bot. 54: 1637-1639 (2003).

Dhankher OP, Rosen BP, McKinney EC, Meagher RB. Hyperaccumulation of arsenic in the shoots of Arabidopsis silenced for arsenate reductase (ACR2). Proc. Natl. Acad. Sci. U.S.A. 103: 5413-5418 (2006).

Dharmasiri N, Dharmasiri S, Weijers D, Karunarathna N, Jurgens G, Estelle M. AXL and AXR1 have redundant functions in RUB conjugation and growth and development in Arabidopsis. Plant J. 52: 114-123 (2007).

Dharmasiri S, Estelle M. The role of regulated protein degradation in auxin response. Plant Mol. Biol. 49: 401-409 (2002).

Dhawan R, Luo H, Foerster AM, Abuqamar S, Du HN, Briggs SD, Mittelsten Scheid O, Mengiste T. HISTONE MONOUBIQUITINATION1 interacts with a subunit of the mediator complex and regulates defense against necrotrophic fungal pathogens in Arabidopsis. Plant Cell 21: 1000-1019 (2009).

Dhingra A, Bies DH, Lehner KR, Folta KM. Green light adjusts the plastid transcriptome during early photomorphogenic development. Plant Physiol. 142: 1256-1266 (2006).

Dhugga KS. Building the wall: genes and enzyme complexes for polysaccharide synthases. Curr. Opin. Plant Biol. 4: 488-493 (2001).

Di Giacomo E, Sestili F, Iannelli MA, Testone G, Mariotti D, Frugis G. Characterization of KNOX genes in Medicago truncatula. Plant Mol. Biol. 67: 135-150 (2008).

Diatloff E, Geiger D, Shang L, Hedrich R, Roberts SK. Differential regulation of K+ channels in Arabidopsis epidermal and stelar root cells. Plant Cell Environ. 27: 980-990 (2004).

Diatloff E, Roberts M, Sanders D, Roberts SK. Characterization of anion channels in the plasma membrane of Arabidopsis epidermal root cells and the identification of a citrate-permeable channel induced by phosphate starvation. Plant Physiol. 136: 4136-4149 (2004).

Diaz C, Lemaitre T, Christ A, Azzopardi M, Kato Y, Sato F, Morot-Gaudry JF, Le Dily F, Masclaux-Daubresse C. Nitrogen recycling and remobilisation are differentially controlled by leaf senescence and development stage in Arabidopsis thaliana under low nitrogen nutrition. Plant Physiol. 147: 1437-1449 (2008).

Diaz C, Purdy S, Christ A, Morot-Gaudry JF, Wingler A, Masclaux-Daubresse C. Characterization of markers to determine the extent and variability of leaf senescence in Arabidopsis. A metabolic profiling approach. Plant Physiol. 138: 898-908 (2005).

Diaz M, Achkor H, Titarenko E, Martinez MC. The gene encoding glutathione-dependent formaldehyde dehydrogenase/GSNO reductase is responsive to wounding, jasmonic acid and salicylic acid. FEBS Lett. 543: 136-139 (2003).

Diaz-Pendon JA, Li F, Li WX, Ding SW. Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant Cell 19: 2053-2063 (2007).

Diaz-Riquelme J, Lijavetzky D, Martinez-Zapater JM, Carmona MJ. Genome-wide analysis of MIKCC-type MADS-box genes in grapevine. Plant Physiol. 149: 354-369 (2009).

Didierjean L, Gondet L, Perkins R, Lau SM, Schaller H, O'Keefe DP, Werck-Reichhart D. Engineering herbicide metabolism in tobacco and Arabidopsis with CYP76B1, a cytochrome P450 enzyme from Jerusalem artichoke. Plant Physiol. 130: 179-189 (2002).

DiDonato RJ Jr, Roberts LA, Sanderson T, Eisley RB, Walker EL. Arabidopsis Yellow Stripe-Like2 (YSL2): a metal-regulated gene encoding a plasma membrane transporter of nicotianamine-metal complexes. Plant J. 39: 403-414 (2004).

DiDonato RJ, Arbuckle E, Buker S, Sheets J, Tobar J, Totong R, Grisafi P, Fink GR, Celenza JL. Arabidopsis ALF4 encodes a nuclear-localized protein required for lateral root formation. Plant J. 37: 340-353 (2004).

Diebold R, Schuster J, Daschner K, Binder S. The branched-chain amino acid transaminase gene family in Arabidopsis encodes plastid and mitochondrial proteins. Plant Physiol. 129: 540-550 (2002).

Diego LB, Berdasco M, Fraga MF, Canal MJ, Rodriguez R, Castresana C. A Pinus radiata AAA-ATPase, the expression of which increases with tree ageing. J. Exp. Bot. 55: 1597-1599 (2004).

Diepold A, Li G, Lennarz WJ, Nurnberger T, Brunner F. The Arabidopsis AtPNG1 gene encodes a peptide: N-glycanase. Plant J. 52: 94-104 (2007).

Diet A, Link B, Seifert GJ, Schellenberg B, Wagner U, Pauly M, Reiter WD, Ringli C. The Arabidopsis root hair cell wall formation mutant lrx1 is suppressed by mutations in the RHM1 gene encoding a UDP-L-rhamnose synthase. Plant Cell 18: 1630-161 (2006).

Dieterle M, Bauer D, Buche C, Krenz M, Schafer E, Kretsch T. A new type of mutation in phytochrome A causes enhanced light sensitivity and alters the degradation and subcellular partitioning of the photoreceptor. Plant J. 41: 146-161 (2005).

Dieterle M, Buche C, Schafer E, Kretsch T. Characterization of a novel non-constitutive photomorphogenic cop1 allele. Plant Physiol. 133: 1557-1564 (2003).

Dieterle M, Thomann A, Renou JP, Parmentier Y, Cognat V, Lemonnier G, Muller R, Shen WH, Kretsch T, Genschik P. Molecular and functional characterization of Arabidopsis Cullin 3A. Plant J. 41: 386-399 (2005).

Dietrich CR, Han G, Chen M, Berg RH, Dunn TM, Cahoon EB. Loss-of-function mutations and inducible RNAi suppression of Arabidopsis LCB2 genes reveal the critical role of sphingolipids in gametophytic and sporophytic cell viability. Plant J. 54: 284-298 (2008).

Dietrich D, Hammes U, Thor K, Suter-Grotemeyer M, Fluckiger R, Slusarenko AJ, Ward JM, Rentsch D. AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis. Plant J. 40: 488-499 (2004).

Dietrich D, Schmuths H, De Marcos Lousa C, Baldwin JM, Baldwin SA, Baker A, Theodoulou FL, Holdsworth MJ. Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series. Mol. Biol. Cell 20: 530-543 (2009).

Dietrich R, Ploss K, Heil M. Growth responses and fitness costs after induction of pathogen resistance depend on environmental conditions. Plant Cell Environ. 28: 211-222 (2005).

Dietrich R, Ploss K, Heil M. Constitutive and induced resistance to pathogens in Arabidopsis thaliana depends on nitrogen supply. Plant Cell Environ. 27: 896-906 (2004).

Dietz KJ, Horling F, Konig J, Baier M. The function of the chloroplast 2-cysteine peroxiredoxin in peroxide detoxification and its regulation. J. Exp. Bot. 53: 1321-1329 (2002).

Dietz KJ, Jacob S, Oelze ML, Laxa M, Tognetti V, de Miranda SM, Baier M, Finkemeier I. The function of peroxiredoxins in plant organelle redox metabolism. J. Exp. Bot. 57: 1697-1709 (2006).

Dievart A, Clark SE. Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases. Curr. Opin. Plant Biol. 6: 507-516 (2003).

Dievart A, Dalal M, Tax FE, Lacey AD, Huttly A, Li J, Clark SE. CLAVATA1 dominant-negative alleles reveal functional overlap between multiple receptor kinases that regulate meristem and organ development. Plant Cell 15: 1198-1211 (2003).

Dijken AJ, Schluepmann H, Smeekens SC. Arabidopsis trehalose-6-phosphate synthase 1 is essential for normal vegetative growth and transition to flowering. Plant Physiol. 135: 969-977 (2004).

Dill A, Thomas SG, Hu J, Steber CM, Sun TP. The Arabidopsis F-box protein SLEEPY1 targets gibberellin signaling repressors for gibberellin-induced degradation. Plant Cell 16: 1392-1405 (2004).

Dimou M, Flemetakis E, Delis C, Aivalakis G, Spyropoulos KG, Katinakis P. Genes coding for a putative cell-wall invertase and two putative monosaccharide/H+ transporters are expressed in roots of etiolated Glycine max seedlings. Plant Sci. 169: 798-804 (2005).

Dinant S, Clark AM, Zhu Y, Vilaine F, Palauqui JC, Kusiak C, Thompson GA. Diversity of the superfamily of phloem lectins (Phloem protein 2) in angiosperms. Plant Physiol. 131: 114-128 (2003).

Dinant S, Ripoll C, Pieper M, David C. Phloem specific expression driven by wheat dwarf geminivirus V-sense promoter in transgenic dicotyledonous species. Physiol. Plant. 121: 108-116 (2004).

Ding L, Pandey S, Assmann SM. Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis. Plant J. 53: 248-263 (2008).

Ding L, Zhu JK. Reduced Na+ uptake in the NaCl-hypersensitive sos1 mutant of Arabidopsis thaliana. Plant Physiol. 113: 795-799 (1997).

Ding L, Zhu JK. A role for arabinogalactan-proteins in root epidermal cell expansion. Planta 203: 289-294 (1997).

Ding X, Iwasaki I, Kitagawa Y. Overexpression of a lily PIP1 gene in tobacco increased the osmotic water permeability of leaf cells. Plant Cell Environ. 27: 177-186 (2004).

Ding Y, Wang X, Su L, Zhai J, Cao S, Zhang D, Liu C, Bi Y, Qian Q, Cheng Z, Chu C, Cao X. SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19: 9-22 (2007).

Ding YH, Liu NY, Tang ZS, Liu J, Yang WC. Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III. Plant Cell 18: 815-830 (2006).

Ding Z, Millar AJ, Davis AM, Davis SJ. TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock. Plant Cell 19: 1522-1536 (2007).

Dinkins R, Reddy MS, Leng M, Collins GB. Overexpression of the Arabidopsis thaliana MinD1 gene alters chloroplast size and number in transgenic tobacco plants. Planta 214: 180-188 (2001).

Dinkins RD, Bandaranayake H, Baeza L, Griffiths AJ, Green BR. hcf5, a nuclear photosynthetic electron transport mutant of Arabidopsis thaliana with a pleiotropic effect on chloroplast gene expression. Plant Physiol. 113: 1023-1031 (1997).

Dinkins RD, Majee SM, Nayak NR, Martin D, Xu Q, Belcastro MP, Houtz RL, Beach CM, Downie AB. Changing transcriptional initiation sites and alternative 5'- and 3'-splice site selection of the first intron deploys Arabidopsis protein isoaspartyl methyltransferase2 variants to different subcellular compartments. Plant J. 55: 1-13 (2008).

Dion E, Li L, Jean M, Belzile F. An Arabidopsis MLH1 mutant exhibits reproductive defects and reveals a dual role for this gene in mitotic recombination. Plant J. 51: 431-440 (2007).

Dirk LM, Williams MA, Houtz RL. Eukaryotic peptide deformylases. Nuclear-encoded and chloroplast-targeted enzymes in Arabidopsis. Plant Physiol. 127: 97-107 (2001).

Dissmeyer N, Nowack MK, Pusch S, Stals H, Inze D, Grini PE, Schnittger A. T-loop phosphorylation of Arabidopsis CDKA;1 is required for its function and can be partially substituted by an aspartate residue. Plant Cell 19: 972-985 (2007).

Divol F, Vilaine F, Thibivilliers S, Kusiak C, Sauge MH, Dinant S. Involvement of the xyloglucan endotransglycosylase/hydrolases encoded by celery XTH1 and Arabidopsis XTH33 in the phloem response to aphids. Plant Cell Environ. 30: 187-201 (2007).

Dixit R, Cyr R. Encounters between dynamic cortical microtubules promote ordering of the cortical array through angle-dependent modifications of microtubule behavior. Plant Cell 16: 3274-3284 (2004).

Dixon DP, Edwards R. Selective binding of glutathione conjugates of fatty acid derivatives by plant glutathione transferases. J. Biol. Chem. 284: 21249-21256 (2009).

Dixon DP, Hawkins T, Hussey PJ, Edwards R. Enzyme activities and subcellular localization of members of the Arabidopsis glutathione transferase superfamily. J. Exp. Bot. 60: 1207-1218 (2009).

Dixon DP, Skipsey M, Grundy NM, Edwards R. Stress-induced protein S-glutathionylation in Arabidopsis. Plant Physiol. 138: 2233-2244 (2005).

Djakovic-Petrovic T, de Wit M, Voesenek LA, Pierik R. DELLA protein function in growth responses to canopy signals. Plant J. 51: 117-126 (2007).

Djerbi S, Lindskog M, Arvestad L, Sterky F, Teeri TT. The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes. Planta 221: 739-746 (2005).

Do CT, Pollet B, Thevenin J, Sibout R, Denoue D, Barriere Y, Lapierre C, Jouanin L. Both caffeoyl coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis. Planta 226: 1117-1129 (2007).

Doczi R, Csanaki C, Banfalvi Z. Expression and promoter activity of the desiccation-specific Solanum tuberosum gene, StDS2. Plant Cell Environ. 25: 1197-1203 (2002).

Dodd AN, Gardner MJ, Hotta CT, Hubbard KE, Dalchau N, Love J, Assie JM, Robertson FC, Jakobsen MK, Goncalves J, Sanders D, Webb AA. The Arabidopsis circadian clock incorporates a cADPR-based feedback loop. Science 318: 1789-1792 (2007).

Dodd AN, Love J, Webb AA. The plant clock shows its metal: circadian regulation of cytosolic free Ca(2+). Trends Plant Sci. 10: 15-21 (2005).

Dodd AN, Salathia N, Hall A, Kevei E, Toth R, Nagy F, Hibberd JM, Millar AJ, Webb AA. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science 309: 630-633 (2005).

Doering-Saad C, Newbury HJ, Couldridge CE, Bale JS, Pritchard J. A phloem-enriched cDNA library from Ricinus: insights into phloem function. J. Exp. Bot. 57: 3183-3193 (2006).

Doerner P. Phosphate starvation signaling: a threesome controls systemic P(i) homeostasis. Curr. Opin. Plant Biol. 11: 536-540 (2008).

Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell 21: 972-984 (2009).

Dohm JC, Lange C, Reinhardt R, Himmelbauer H. Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes. Plant J. 57: 14-26 (2009).

Dohmann EM, Kuhnle C, Schwechheimer C. Loss of the CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome subunit 5 is sufficient to cause the cop/det/fus mutant phenotype in Arabidopsis. Plant Cell 17: 1967-1978 (2005).

Dohmoto M, Sano J, Tsunoda H, Yamaguchi K. Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res. 6: 313-317 (1999).

Dohmoto M, Tsunoda H, Isaji G, Chiba R, Yamaguchi K. Genes encoding nitrilase-like proteins from tobacco. DNA Res. 7: 283-289 (2000).

Doi M, Shigenaga A, Emi T, Kinoshita T, Shimazaki K. A transgene encoding a blue-light receptor, phot1, restores blue-light responses in the Arabidopsis phot1 phot2 double mutant. J. Exp. Bot. 55: 517-523 (2004).

Dojcinovic D, Krosting J, Harris AJ, Wagner DJ, Rhoads DM. Identification of a region of the Arabidopsis AtAOX1a promoter necessary for mitochondrial retrograde regulation of expression. Plant Mol. Biol. 58: 159-175 (2005).

Dolan L. Positional information and mobile transcriptional regulators determine cell pattern in the Arabidopsis root epidermis. J. Exp. Bot. 57: 51-54 (2006).

Dolan L. How and where to build a root hair. Curr. Opin. Plant Biol. 4: 550-554 (2001).

Dolferus R, Jacobs M, Peacock WJ, Dennis ES. Differential interactions of promoter elements in stress responses of the Arabidopsis Adh gene. Plant Physiol. 105: 1075-1087 (1994).

Dolferus R, Klok EJ, Delessert C, Wilson S, Ismond KP, Good AG, Peacock WJ, Dennis ES. Enhancing the anaerobic response. Ann. Bot. (Lond.) 91: 111-117 (2003).

Dolferus R, Osterman JC, Peacock WJ, Dennis ES. Cloning of the Arabidopsis and rice formaldehyde dehydrogenase genes: implications for the origin of plant ADH enzymes. Genetics 146: 1131-1141 (1997).

Dombrecht B, Xue GP, Sprague SJ, Kirkegaard JA, Ross JJ, Reid JB, Fitt GP, Sewelam N, Schenk PM, Manners JM, Kazan K. MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19: 2225-2245 (2007).

Dominguez MJ, Gutierrez F, Leon R, Vilchez C, Vega JM, Vigara J. Cadmium increases the activity levels of glutamate dehydrogenase and cysteine synthase in Chlamydomonas reinhardtii. Plant Physiol. Biochem. 41: 828-832 (2003).

Donaldson L, Ludidi N, Knight MR, Gehring C, Denby K. Salt and osmotic stress cause rapid increases in Arabidopsis thaliana cGMP levels. FEBS Lett. 569: 317-320 (2004).

Dong B, Rengel Z, Delhaize E. Uptake and translocation of phosphate by pho2 mutant and wild-type seedlings of Arabidopsis thaliana. Planta 205: 251-256 (1998).

Dong B, Ryan PR, Rengel Z, Delhaize E. Phosphate uptake in Arabidopsis thaliana: dependence of uptake on the expression of transporter genes and internal phosphate concentrations. Plant Cell Environ. 22: 1455-1461 (1999).

Dong CH, Rivarola M, Resnick JS, Maggin BD, Chang C. Subcellular co-localization of Arabidopsis RTE1 and ETR1 supports a regulatory role for RTE1 in ETR1 ethylene signaling. Plant J. 53: 275-286 (2008).

Dong G, Ni Z, Yao Y, Nie X, Sun Q. Wheat Dof transcription factor WPBF interacts with TaQM and activates transcription of an alpha-gliadin gene during wheat seed development. Plant Mol. Biol. 63: 73-84 (2007).

Dong H, Deng Y, Mu J, Lu Q, Wang Y, Xu Y, Chu C, Chong K, Lu C, Zuo J. The Arabidopsis Spontaneous Cell Death1 gene, encoding a zeta-carotene desaturase essential for carotenoid biosynthesis, is involved in chloroplast development, photoprotection and retrograde signalling. Cell. Res. 17: 458-470 (2007).

Dong HP, Peng J, Bao Z, Meng X, Bonasera JM, Chen G, Beer SV, Dong H. Downstream divergence of the ethylene signaling pathway for harpin-stimulated Arabidopsis growth and insect defense. Plant Physiol. 136: 3628-3638 (2004).

Dong HP, Yu H, Bao Z, Guo X, Peng J, Yao Z, Chen G, Qu S, Dong H. The ABI2-dependent abscisic acid signalling controls HrpN-induced drought tolerance in Arabidopsis. Planta 221: 313-327 (2005).

Dong J, Keller WA, Yan W, Georges F. Gene expression at early stages of Brassica napus seed development as revealed by transcript profiling of seed-abundant cDNAs. Planta 218: 483-491 (2004).

Dong J, Kim ST, Lord EM. Plantacyanin plays a role in reproduction in Arabidopsis. Plant Physiol. 138: 778-789 (2005).

Dong L, Wang L, Zhang Y, Zhang Y, Deng X, Xue Y. An auxin-inducible F-box protein CEGENDUO negatively regulates auxin-mediated lateral root formation in Arabidopsis. Plant Mol. Biol. 60: 599-615 (2006).

Dong Q, Lawrence CJ, Schlueter SD, Wilkerson MD, Kurtz S, Lushbough C, Brendel V. Comparative plant genomics resources at PlantGDB. Plant Physiol. 139: 610-618 (2005).

Dong X. NPR1, all things considered. Curr. Opin. Plant Biol. 7: 547-552 (2004).

Dong X, Braun EL, Grotewold E. Functional conservation of plant secondary metabolic enzymes revealed by complementation of Arabidopsis flavonoid mutants with maize genes. Plant Physiol. 127: 46-57 (2001).

Dong X, Hong Z, Chatterjee J, Kim S, Verma DP. Expression of callose synthase genes and its connection with Npr1 signaling pathway during pathogen infection. Planta 229: 87-98 (2008).

Dong X, Hong Z, Sivaramakrishnan M, Mahfouz M, Verma DP. Callose synthase (CalS5) is required for exine formation during microgametogenesis and for pollen viability in Arabidopsis. Plant J. 42: 315-328 (2005).

Dong YH, Yao JL, Atkinson RG, Putterill JJ, Morris BA, Gardner RC. MDH1: an apple homeobox gene belonging to the BEL1 family. Plant Mol. Biol. 42: 623-633 (2000).

Dong ZC, Zhao Z, Liu CW, Luo JH, Yang J, Huang WH, Hu XH, Wang TL, Luo D. Floral patterning in Lotus japonicus. Plant Physiol. 137: 1272-1282 (2005).

Donson J, Fang Y, Espiritu-Santo G, Xing W, Salazar A, Miyamoto S, Armendarez V, Volkmuth W. Comprehensive gene expression analysis by transcript profiling. Plant Mol. Biol. 48: 75-97 (2002).

Dorcey E, Urbez C, Blazquez MA, Carbonell J, Perez-Amador MA. Fertilization-dependent auxin response in ovules triggers fruit development through the modulation of gibberellin metabolism in Arabidopsis. Plant J. 58: 318-332 (2009).

Dormann P. Functional diversity of tocochromanols in plants. Planta 225: 269-276 (2007).

Dormann P, Hoffmann-Benning S, Balbo I, Benning C. Isolation and characterization of an Arabidopsis mutant deficient in the thylakoid lipid digalactosyl diacylglycerol. Plant Cell 7: 1801-1810 (1995).

Dormann P, Voelker TA, Ohlrogge JB. Accumulation of palmitate in Arabidopsis mediated by the acyl-acyl carrier protein thioesterase FATB1. Plant Physiol. 123: 637-644 (2000).

Dornelas MC, Rodriguez AP. The rubber tree (Hevea brasiliensis Muell. Arg.) homologue of the LEAFY/FLORICAULA gene is preferentially expressed in both male and female floral meristems. J. Exp. Bot. 56: 1965-1974 (2005).

Dornelas MC, Rodriguez AP. The tropical cedar tree (Cedrela fissilis Vell., Meliaceae) homolog of the Arabidopsis LEAFY gene is expressed in reproductive tissues and can complement Arabidopsis leafy mutants. Planta 223: 306-314 (2006).

Douce R, Neuburger M. Biochemical dissection of photorespiration. Curr. Opin. Plant Biol. 2: 214-222 (1999).

Douchkov D, Gryczka C, Stephan UW, Hell R, Baumlein H. Ectopic expression of nicotianamine synthase genes results in improved iron accumulation and increased nickel tolerance in transgenic tobacco. Plant Cell Environ. 28: 365-374 (2005).

Douglas Grubb C, Zipp BJ, Ludwig-Muller J, Masuno MN, Molinski TF, Abel S. Arabidopsis glucosyltransferase UGT74B1 functions in glucosinolate biosynthesis and auxin homeostasis. Plant J. 40: 893-908 (2004).

Douglas P, Moorhead G, Hong Y, Morrice N, MacKintosh C. Purification of a nitrate reductase kinase from Spinacea oleracea leaves, and its identification as a calmodulin-domain protein kinase. Planta 206: 435-442 (1998).

Douglas P, Pigaglio E, Ferrer A, Halfords NG, MacKintosh C. Three spinach leaf nitrate reductase-3-hydroxy-3-methylglutaryl-CoA reductase kinases that are required by reversible phosphorylation and/or Ca2+ ions. Biochem. J. 325: 101-109 (1997).

Dowdle J, Ishikawa T, Gatzek S, Rolinski S, Smirnoff N. Two genes in Arabidopsis thaliana encoding GDP-L-galactose phosphorylase are required for ascorbate biosynthesis and seedling viability. Plant J. 52: 673-689 (2007).

Downes BP, Saracco SA, Lee SS, Crowell DN, Vierstra RD. MUBs, a family of ubiquitin-fold proteins that are plasma membrane-anchored by prenylation. J. Biol. Chem. 281: 27145-27157 (2006).

Downes BP, Stupar RM, Gingerich DJ, Vierstra RD. The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. Plant J. 35: 729-742 (2003).

Doyle EA, Lane AM, Sides JM, Mudgett MB, Monroe JD. An alpha-amylase (At4g25000) in Arabidopsis leaves is secreted and induced by biotic and abiotic stress. Plant Cell Environ. 30: 388-398 (2007).

Doyle MR, Bizzell CM, Keller MR, Michaels SD, Song J, Noh YS, Amasino RM. HUA2 is required for the expression of floral repressors in Arabidopsis thaliana. Plant J. 41: 376-385 (2005).

Draborg H, Villadsen D, Nielsen TH. Transgenic Arabidopsis plants with decreased activity of fructose-6-phosphate,2-kinase/fructose-2,6-bisphosphatase have altered carbon partitioning. Plant Physiol. 126: 750-758 (2001).

Drager DB, Desbrosses-Fonrouge AG, Krach C, Chardonnens AN, Meyer RC, Saumitou-Laprade P, Kramer U. Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels. Plant J. 39: 425-439 (2004).

Drakakaki G, Zabotina O, Delgado I, Robert S, Keegstra K, Raikhel N. Arabidopsis RGP1 and RGP2 are essential for pollen development. Plant Physiol. 142: 1480-1492 (2006).

Draper J, Mur LA, Jenkins G, Ghosh-Biswas GC, Bablak P, Hasterok R, Routledge AP. Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol. 127: 1539-1555 (2001).

Dray E, Siaud N, Dubois E, Doutriaux MP. Interaction between Arabidopsis Brca2 and its partners: Rad51, Dmc1 and Dss. Plant Physiol. 140: 1059-1069 (2006).

Draye X. Consequences of root growth kinetics and vascular structure on the distribution of lateral roots. Plant Cell Environ. 25: 1463-1474 (2002).

Drea S, Leader DJ, Arnold BC, Shaw P, Dolan L, Doonan JH. Systematic spatial analysis of gene expression during wheat caryopsis development. Plant Cell 17: 2172-2185 (2005).

Drea SC, Lao NT, Wolfe KH, Kavanagh TA. Gene duplication, exon gain and neofunctionalization of OEP16-related genes in land plants. Plant J. 46: 723-735 (2006).

Drea SC, Mould RM, Hibberd JM, Gray JC, Kavanagh TA. Tissue-specific and developmental-specific expression of an Arabidopsis thaliana gene encoding the lipoamide dehydrogenase component of the plastid pyruvate dehydrogenase complex. Plant Mol. Biol. 46: 705-715 (2001).

Dreher KA, Brown J, Saw RE, Callis J. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell 18: 699-714 (2006).

Dreni L, Jacchia S, Fornara F, Fornari M, Ouwerkerk PB, An G, Colombo L, Kater MM. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J. 52: 690-699 (2007).

Drenkard E, Richter BG, Rozen S, Stutius LM, Angell NA, Mindrinos M, Cho RJ, Oefner PJ, Davis RW, Ausubel FM. A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiol. 124: 1483-1492 (2000).

Dresselhaus T, Amien S, Marton M, Strecke A, Brettschneider R, Cordts S. TRANSPARENT LEAF AREA1 encodes a secreted proteolipid required for anther maturation, morphogenesis, and differentiation during leaf development in maize. Plant Cell 17: 730-745 (2005).

Dreyer I, Antunes S, Hoshi T, Muller-Rober B, Palme K, Pongs O, Reintanz B, Hedrich R. Plant K+ channel alpha-subunits assemble indiscriminately. Biophys. J. 72: 2143-2150 (1997).

Dreyer I, Becker D, Bregante M, Gambale F, Lehnen M, Palme K, Hedrich R. Single mutations strongly alter the K+-selective pore of the K(in) channel KAT1. FEBS Lett. 430: 370-376 (1998).

Droillard MJ, Boudsocq M, Barbier-Brygoo H, Lauriere C. Involvement of MPK4 in osmotic stress response pathways in cell suspensions and plantlets of Arabidopsis thaliana: activation by hypoosmolarity and negative role in hyperosmolarity tolerance. FEBS Lett. 574: 42-48 (2004).

Droillard MJ, Boudsocq M, Barbler-Brygoo H, Lauriere C. Different protein kinase families are activated by osmotic stresses in Arabidopsis thaliana cell suspensions - Involvement of the MAP kinases AtMPK3 and AtMPK6. FEBS Lett. 527: 43-50 (2002).

Drozdowicz YM, Kissinger JC, Rea PA. AVP2, a sequence-divergent, K(+)-insensitive H(+)-translocating inorganic pyrophosphatase from Arabidopsis. Plant Physiol. 123: 353-362 (2000).

Drykova D, Cenklova V, Sulimenko V, Volc J, Draber P, Binarova P. Plant gamma-tubulin interacts with alphabeta-tubulin dimers and forms membrane-associated complexes. Plant Cell 15: 465-480 (2003).

Du J, Huang YP, Xi J, Cao MJ, Ni WS, Chen X, Zhu JK, Oliver DJ, Xiang CB. Functional gene-mining for salt tolerance genes with the power of Arabidopsis. Plant J. 56: 653-664 (2008).

du Jardin P, Rojas-Beltran J, Gebhardt C, Brasseur R. Molecular cloning and characterization of a soluble inorganic pyrophosphatase in potato. Plant Physiol. 109: 853-860 (1995).

Du L, Poovaiah BW. A novel family of Ca2+/calmodulin-binding proteins involved in transcriptional regulation: interaction with fsh/Ring3 class transcription activators. Plant Mol. Biol. 54: 549-569 (2004).

Duan GL, Zhu YG, Tong YP, Cai C, Kneer R. Characterization of arsenate reductase in the extract of roots and fronds of chinese brake fern, an arsenic hyperaccumulator. Plant Physiol. 138: 461-469 (2005).

Duan H, Huang MY, Palacio K, Schuler MA. Variations in CYP74B2 (hydroperoxide lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of Arabidopsis. Plant Physiol. 139: 1529-1544 (2005).

Duan H, Schuler MA. Differential expression and evolution of the Arabidopsis CYP86A subfamily. Plant Physiol. 137: 1067-1081 (2005).

Duan K, Ding X, Zhang Q, Zhu H, Pan A, Huang J. AtCopeg1, the unique gene originated from AtCopia95 retrotransposon family, is sensitive to external hormones and abiotic stresses. Plant Cell Rep. 27: 1065-1073 (2008).

Duan K, Yi K, Dang L, Huang H, Wu W, Wu P. Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Plant J. 54: 965-975 (2008).

Duan QH, Wang DH, Xu ZH, Bai SN. Stamen development in Arabidopsis is arrested by organ-specific overexpression of a cucumber ethylene synthesis gene CsACO2. Planta 228: 537-543 (2008).

Duan X, Song Y, Yang A, Zhang J. The transgene pyramiding tobacco with betaine synthesis and heterologous expression of AtNHX1 is more tolerant to salt stress than either of the tobacco lines with betaine synthesis or AtNHX1. Physiol. Plant. 135: 281-295 (2009).

Dubest S, Gallego ME, White CI. Roles of the AtErcc1 protein in recombination. Plant J. 39: 334-342 (2004).

Dubos C, Huggins D, Grant GH, Knight MR, Campbell MM. A role for glycine in the gating of plant NMDA-like receptors. Plant J. 35: 800-810 (2003).

Dubos C, Le Gourrierec J, Baudry A, Huep G, Lanet E, Debeaujon I, Routaboul JM, Alboresi A, Weisshaar B, Lepiniec L. MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana. Plant J. 55: 940-953 (2008).

Dubos C, Willment J, Huggins D, Grant GH, Campbell MM. Kanamycin reveals the role played by glutamate receptors in shaping plant resource allocation. Plant J. 43: 348-355 (2005).

Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J. 33: 751-763 (2003).

Dubrovsky JG, Gambetta GA, Hernandez-Barrera A, Shishkova S, Gonzalez I. Lateral root initiation in Arabidopsis: developmental window, spatial patterning, density and predictability. Ann. Bot. (Lond.) 97: 903-915 (2006).

Dubrovsky JG, Guttenberger M, Saralegui A, Napsucialy-Mendivil S, Voigt B, Baluska F, Menzel D. Neutral red as a probe for confocal laser scanning microscopy studies of plant roots. Ann. Bot. (Lond.) 97: 1127-1138 (2006).

Dubrovsky JG, Soukup A, Napsucialy-Mendivil S, Jeknic Z, Ivanchenko MG. The lateral root initiation index: an integrative measure of primordium formation. Ann. Bot. (Lond.) 103: 807-817 (2009).

Duby G, Hosy E, Fizames C, Alcon C, Costa A, Sentenac H, Thibaud JB. AtKC1, a conditionally targeted Shaker-type subunit, regulates the activity of plant K+ channels. Plant J. 53: 115-123 (2008).

Duclos DV, Bjorkman T. Meristem identity gene expression during curd proliferation and flower initiation in Brassica oleracea. J. Exp. Bot. 59: 421-433 (2008).

Dudareva N, Martin D, Kish CM, Kolosova N, Gorenstein N, Faldt J, Miller B, Bohlmann J. (E)-beta-ocimene and myrcene synthase genes of floral scent biosynthesis in snapdragon: function and expression of three terpene synthase genes of a new terpene synthase subfamily. Plant Cell 15: 1227-1241 (2003).

Duek PD, Fankhauser C. bHLH class transcription factors take centre stage in phytochrome signalling. Trends Plant Sci. 10: 51-54 (2005).

Dugardeyn J, Vandenbussche F, Van Der Straeten D. To grow or not to grow: what can we learn on ethylene-gibberellin cross-talk by in silico gene expression analysis? J. Exp. Bot. 59: 1-16 (2008).

Dugas DV, Bartel B. Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases. Plant Mol. Biol. 67: 403-417 (2008).

Dumas R, Biou V, Douce R. Purification and characterization of a fusion protein of plant acetohydroxy acid synthase and acetohydroxy acid isomeroreductase. FEBS Lett. 408: 156-160 (1997).

Dumas R, Curien G, DeRose RT, Douce R. Branched-chain-amino-acid biosynthesis in plants: molecular cloning and characterization of the gene encoding acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase) from Arabidopsis thaliana (thale cress). Biochem. J. 294: 821-828 (1993).

Dumez S, Wattebled F, Dauvillee D, Delvalle D, Planchot V, Ball SG, D'Hulst C. Mutants of Arabidopsis lacking starch branching enzyme II substitute plastidial starch synthesis by cytoplasmic maltose accumulation. Plant Cell 18: 2694-2709 (2006).

Dunaeva M, Adamska W. Identification of genes expressed in response to light stress in leaves of Arabidopsis thaliana using RNA differential display. Eur. J. Biochem. 268: 5521-5529 (2001).

Dundar E, Bush DR. BAT1, a bidirectional amino acid transporter in Arabidopsis. Planta 229: 1047-1056 (2009).

Dunn TM, Lynch DV, Michaelson LV, Napier JA. A post-genomic approach to understanding sphingolipid metabolism in Arabidopsis thaliana. Ann. Bot. (Lond.) 93: 483-497 (2004).

Dunoyer P, Lecellier CH, Parizotto EA, Himber C, Voinnet O. Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing. Plant Cell 16: 1235-1250 (2004).

Duprat A, Caranta C, Revers F, Menand B, Browning KS, Robaglia C. The Arabidopsis eukaryotic initiation factor (iso)4E is dispensable for plant growth but required for susceptibility to potyviruses. Plant J. 32: 927-934 (2002).

Duque P, Chua NH. IMB1, a bromodomain protein induced during seed imbibition, regulates ABA- and phyA-mediated responses of germination in Arabidopsis. Plant J. 35: 787-799 (2003).

Durand N, Briand X, Meyer C. The effect of marine bioactive substances (N PRO) and exogenous cytokinins on nitrate reductase activity in Arabidopsis thaliana. Physiol. Plant. 119: 489-493 (2003).

Durbarry A, Vizir I, Twell D. Male germ line development in Arabidopsis. duo pollen mutants reveal gametophytic regulators of generative cell cycle progression. Plant Physiol. 137: 297-307 (2005).

Duroux M, Houben A, Ruzicka K, Friml J, Grasser KD. The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome. Plant J. 40: 660-671 (2004).

Durrett TP, Connolly EL, Rogers EE. Arabidopsis cpFtsY mutants exhibit pleiotropic defects including an inability to increase iron deficiency-inducible root Fe(III) chelate reductase activity. Plant J. 47: 467-479 (2006).

Durrett TP, Gassmann W, Rogers EE. The FRD3-mediated efflux of citrate into the root vasculature is necessary for efficient iron translocation. Plant Physiol. 144: 197-1205 (2007).

Dutta B, Kanani H, Quackenbush J, Klapa MI. Time-series integrated "omic" analyses to elucidate short-term stress-induced responses in plant liquid cultures. Biotechnol. Bioeng. 102: 264-279 (2009).

Duval I, Beaudoin N. Transcriptional profiling in response to inhibition of cellulose synthesis by thaxtomin A and isoxaben in Arabidopsis thaliana suspension cells. Plant Cell Rep. 28: 811-830 (2009).

Duval I, Brochu V, Simard M, Beaulieu C, Beaudoin N. Thaxtomin A induces programmed cell death in Arabidopsis thaliana suspension-cultured cells. Planta 222: 820-831 (2005).

Duy D, Wanner G, Meda AR, von Wirén N, Soll J, Philippar K. PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport. Plant Cell 19: 986-1006 (2007).

Dykema PE, Sipes PR, Marie A, Biermann BJ, Crowell DN, Randall SK. A new class of proteins capable of binding transition metals. Plant Mol. Biol. 41: 139-150 (1999).

Dzuibany C, Haupt S, Fock H, Biehler K, Migge A, Becker TW. Regulation of nitrate reductase transcript levels by glutamine accumulating in the leaves of a ferredoxin-dependent glutamate synthase-deficient gluS mutant of Arabidopsis thaliana, and by glutamine provided via the roots. Planta 206: 515-522 (1998).

Eamens A, Vaistij FE, Jones L. NRPD1a and NRPD1b are required to maintain post-transcriptional RNA silencing and RNA-directed DNA methylation in Arabidopsis. Plant J. 55: 596-606 (2008).

Eapen D, Barroso ML, Campos ME, Ponce G, Corkidi G, Dubrovsky JG, Cassab GI. A no hydrotropic response root mutant that responds positively to gravitropism in Arabidopsis. Plant Physiol. 131: 536-546 (2003).

Eapen D, Barroso ML, Ponce G, Campos ME, Cassab GI. Hydrotropism: root growth responses to water. Trends Plant Sci. 10: 44-50 (2005).

Earley KW, Shook MS, Brower-Toland B, Hicks L, Pikaard CS. In vitro specificities of Arabidopsis co-activator histone acetyltransferases: implications for histone hyperacetylation in gene activation. Plant J. 52: 615-626 (2007).

Eason JR, Ryan DJ, Watson LM, Hedderley D, Christey MC, Braun RH, Coupe SA. Suppression of the cysteine protease, aleurain, delays floret senescence in Brassica oleracea. Plant Mol. Biol. 57: 645-657 (2005).

Eastmond PJ. MONODEHYROASCORBATE REDUCTASE4 is required for seed storage oil hydrolysis and postgerminative growth in Arabidopsis. Plant Cell 19: 1376-1387 (2007).

Eastmond PJ. SUGAR-DEPENDENT1 encodes a patatin domain triacylglycerol lipase that initiates storage oil breakdown in germinating Arabidopsis seeds. Plant Cell 18: 665-675 (2006).

Eastmond PJ. Glycerol-insensitive Arabidopsis mutants: gli1 seedlings lack glycerol kinase, accumulate glycerol and are more resistant to abiotic stress. Plant J. 37: 617-625 (2004).

Eastmond PJ, Graham IA. Trehalose metabolism: a regulatory role for trehalose-6-phosphate? Curr. Opin. Plant Biol. 6: 231-235 (2003).

Eastmond PJ, Li Y, Graham IA. Is trehalose-6-phosphate a regulator of sugar metabolism in plants? J. Exp. Bot. 54: 533-537 (2003).

Eastmond PJ, van Dijken AJ, Spielman M, Kerr A, Tissier AF, Dickinson HG, Jones JD, Smeekens SC, Graham IA. Trehalose-6-phosphate synthase 1, which catalyses the first step in trehalose synthesis, is essential for Arabidopsis embryo maturation. Plant J. 29: 225-235 (2002).

Ebbs ML, Bender J. Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176 (2006).

Eberhard J, Ehrler TT, Epple P, Felix G, Raesecke HR, Amrhein N, Schmid J. Cytosolic and plastidic chorismate mutase isozymes from Arabidopsis thaliana: molecular characterization and enzymatic properties. Plant J. 10: 815-821 (1996).

Eberhard J, Raesecke HR, Schmid J, Amrhein N. Cloning and expression in yeast of a higher plant chorismate mutase. Molecular cloning, sequencing of the cDNA and characterization of the Arabidopsis thaliana enzyme expressed in yeast. FEBS Lett. 334: 233-236 (1993).

Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T. A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana. Plant Cell 20: 3006-3021 (2008).

Eckardt NA. Arabidopsis synaptotagmin1 maintains plasma membrane integrity. Plant Cell 20: 3182 (2008).

Eckardt NA. Temperature entrainment of the Arabidopsis circadian clock. Plant Cell 17: 645-647 (2005).

Eckardt NA. MicroRNAs regulate auxin homeostasis and plant development. Plant Cell 17: 1335-1338 (2005).

Eckardt NA. Peroxisomal citrate synthase provides exit route from fatty acid metabolism in oilseeds. Plant Cell 17: 1863-1865 (2005).

Eckardt NA. Photorespiration revisited. Plant Cell 17: 2139-2141 (2005).

Eckardt NA. Complexities of R gene evolution in Arabidopsis. Plant Cell 18: 1782a (2006).

Eckardt NA. Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are nucleoporins. Plant Cell 18: 1541a (2006).

Eckardt NA. Structure-function analysis of Arabidopsis SNI1. Plant Cell 18: 1541 (2006).

Eckardt NA. A CLASSY RNA silencing signaling mutant in Arabidopsis. Plant Cell 19: 1439 (2007).

Eckardt NA. Epistasis and genetic regulation of variation in the Arabidopsis metabolome. Plant Cell 20: 1185-1186 (2008).

Eckardt NA. Foolish seedlings and DELLA regulators: the functions of rice SLR1 and Arabidopsis RGL1 in GA signal transduction. Plant Cell 14: 1 (2002).

Eckardt NA. Some like it with nitriles: a nitrile-specifying protein linked to herbivore feeding behavior in Arabidopsis. Plant Cell 13: 2565-2568 (2001).

Eckardt NA. Tangerine dreams: cloning of carotenoid isomerase from Arabidopsis and tomato. Plant Cell 14: 289-292 (2002).

Eckardt NA. Arabidopsis Genome Conference 2000. How a small weed changed the world. Plant Cell 13: 5-10 (2001).

Eckardt NA. Characterization of the last subunit of the Arabidopsis COP9 signalosome. Plant Cell 15: 580-581 (2003).

Eckardt NA. A new twist on systemic acquired resistance: redox control of the NPR1-TGA1 interaction by salicylic acid. Plant Cell 15: 1947-1949 (2003).

Eckardt NA. Viral defense and counterdefense: a role for adenosine kinase in innate defense and RNA silencing. Plant Cell 15: 2758-2762 (2003).

Eckardt NA, Innes R. Resistance rodeo: rounding up the full complement of Arabidopsis NBS-LRR genes. Plant Cell 15: 806-807 (2003).

Eckardt NA, Snyder GW, Portis AR Jr, Orgen WL. Growth and photosynthesis under high and low irradiance of Arabidopsis thaliana antisense mutants with reduced ribulose-1,5-bisphosphate carboxylase/oxygenase activase content. Plant Physiol. 113: 575-586 (1997).

Eckert H, Lavallee B, Schweiger BJ, Kinney AJ, Cahoon EB, Clemente T. Co-expression of the borage Delta(6) desaturase and the Arabidopsis Delta(15) desaturase results in high accumulation of stearidonic acid in the seeds of transgenic soybean. Planta 224: 1050-1057 (2006).

Eckhardt U, Grimm B, Hortensteiner S. Recent advances in chlorophyll biosynthesis and breakdown in higher plants. Plant Mol. Biol. 56: 1-14 (2004).

Eckhardt U, Mas Marques A, Buckhout TJ. Two iron-regulated cation transporters from tomato complement metal uptake-deficient yeast mutants. Plant Mol. Biol. 45: 437-448 (2001).

Edwards D, Murray JA, Smith AG. Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. Plant Physiol. 117: 1015-1022 (1998).

Edwards K, Whitty A. Editorial. Plant Biotechnology Journal 1: 1 (2003).

Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JC, Lynn JR, Straume M, Smith JQ, Millar AJ. FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell 18: 639-650 (2006).

Effmert U, Saschenbrecker S, Ross J, Negre F, Fraser CM, Noel JP, Dudareva N, Piechulla B. Floral benzenoid carboxyl methyltransferases: from in vitro to in planta function. Phytochemistry 66: 1211-1230 (2005).

Efroni I, Blum E, Goldshmidt A, Eshed Y. A protracted and dynamic maturation schedule underlies Arabidopsis leaf development. Plant Cell 20: 2293-2306 (2008).

Egelkrout EM, Mariconti L, Settlage SB, Cella R, Robertson D, Hanley-Bowdoin L. Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. Plant Cell 14: 3225-3236 (2002).

Egelund J, Obel N, Ulvskov P, Geshi N, Pauly M, Bacic A, Petersen BL. Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue. Plant Mol. Biol. 64: 439-451 (2007).

Egelund J, Petersen BL, Motawia MS, Damager I, Faik A, Olsen CE, Ishii T, Clausen H, Ulvskov P, Geshi N. Arabidopsis thaliana RGXT1 and RGXT2 encode Golgi-localized (1,3)-{alpha}-D-xylosyltransferases involved in the synthesis of pectic rhamnogalacturonan-II. Plant Cell 18: 2593-2607 (2006).

Egelund J, Skjot M, Geshi N, Ulvskov P, Petersen BL. A complementary bioinformatics approach to identify potential plant cell wall glycosyltransferase-encoding genes. Plant Physiol. 136: 2609-2620 (2004).

Ehlert A, Weltmeier F, Wang X, Mayer CS, Smeekens S, Vicente-Carbajosa J, Droge-Laser W. Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: establishment of a heterodimerization map of group C and group S bZIP transcription factors. Plant J. 46: 890-900 (2006).

Ehlting J, Buttner D, Wang Q, Douglas CJ, Somssich IE, Kombrink E. Three 4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms. Plant J. 19: 9-20 (1999).

Ehlting J, Mattheus N, Aeschliman DS, Li E, Hamberger B, Cullis IF, Zhuang J, Kaneda M, Mansfield SD, Samuels L, Ritland K, Ellis BE, Bohlmann J, Douglas CJ. Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation. Plant J. 42: 618-640 (2005).

Ehlting J, Shin JJ, Douglas CJ. Identification of 4-coumarate:coenzyme A ligase (4CL) substrate recognition domains. Plant J. 27: 455-465 (2001).

Ehsan H, Ray WK, Phinney B, Wang X, Huber SC, Clouse SD. Interaction of Arabidopsis BRASSINOSTEROID-INSENSITIVE 1 receptor kinase with a homolog of mammalian TGF-beta receptor interacting protein. Plant J. 43: 251-261 (2005).

Ehsan H, Reichheld JP, Durfee T, Roe JL. TOUSLED kinase activity oscillates during the cell cycle and interacts with chromatin regulators. Plant Physiol. 134: 1488-1499 (2004).

Eichhorn H, Klinghammer M, Becht P, Tenhaken R. Isolation of a novel ABC-transporter gene from soybean induced by salicylic acid. J. Exp. Bot. 57: 2193-2201 (2006).

Eicks M, Maurino V, Knappe S, Flugge UI, Fischer K. The plastidic pentose phosphate translocator represents a link between the cytosolic and the plastidic pentose phosphate pathways in plants. Plant Physiol. 128: 512-522 (2002).

Eilers T, Schwarz G, Brinkmann H, Witt C, Richter T, Nieder J, Koch B, Hille R, Hansch R, Mendel RR. Identification and biochemical characterization of Arabidopsis thaliana sulfite oxidase - A new player in plant sulfur metabolism. J. Biol. Chem. 276: 46989-46994 (2001).

Eimert K, Wang SM, Lue WI, Chen J. Monogenic recessive mutations causing both late floral initiation and excess starch accumulation in Arabidopsis. Plant Cell 7: 1703-1712 (1995).

Einset J, Winge P, Bones AM, Connolly EL. The FRO2 ferric reductase is required for glycine betaine's effect on chilling tolerance in Arabidopsis root. Physiol. Plant. 134: 334-341 (2008).

Eisenhaber B, Wildpaner M, Schultz CJ, Borner GH, Dupree P, Eisenhaber F. Glycosylphosphatidylinositol lipid anchoring of plant proteins. Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice. Plant Physiol. 133: 1691-1701 (2003).

Ekman DR, Lorenz WW, Przybyla AE, Wolfe NL, Dean JF. SAGE analysis of transcriptome responses in Arabidopsis roots exposed to 2,4,6-trinitrotoluene. Plant Physiol. 133: 1397-1406 (2003).

El Amrani A, Marie L, Ainouche A, Nicolas J, Couee I. Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana. Mol. Genet. Genomics 267: 459-471 (2002).

El Ouakfaoui S, Miki B. The stability of the Arabidopsis transcriptome in transgenic plants expressing the marker genes nptII and uidA. Plant J. 41: 791-800 (2005).

El-Din El-Assal S, Alonso-Blanco C, Peeters AJ, Wagemaker C, Weller JL, Koornneef M. The role of cryptochrome 2 in flowering in Arabidopsis. Plant Physiol. 133: 1504-1516 (2003).

El-Din El-Assal S, Le J, Basu D, Mallery EL, Szymanski DB. DISTORTED2 encodes an ARPC2 subunit of the putative Arabidopsis ARP2/3 complex. Plant J. 38: 526-538 (2004).

El-Lithy ME, Clerkx EJ, Ruys GJ, Koornneef M, Vreugdenhil D. Quantitative trait locus analysis of growth-related traits in a new Arabidopsis recombinant inbred population. Plant Physiol. 135: 444-458 (2004).

El-Lithy ME, Rodrigues GC, van Rensen JJ, Snel JF, Dassen HJ, Koornneef M, Jansen MA, Aarts MG, Vreugdenhil D. Altered photosynthetic performance of a natural Arabidopsis accession is associated with atrazine resistance. J. Exp. Bot. 56: 1625-1634 (2005).

El-Sharkawy I, Jones B, Li ZG, Lelievre JM, Pech JC, Latche A. Isolation and characterization of four ethylene perception elements and their expression during ripening in pears (Pyrus communis L.) with/without cold requirement. J. Exp. Bot. 54: 1615-1625 (2003).

Elich TD, Chory J. Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins. Plant Cell 9: 2271-2280 (1997).

Elitzur T, Nahum H, Borovsky Y, Pekker I, Eshed Y, Paran I. Co-ordinated regulation of flowering time, plant architecture and growth by FASCICULATE: the pepper orthologue of SELF PRUNING. J. Exp. Bot. 60: 869-880 (2009).

Ellendorff U, Fradin EF, de Jonge R, Thomma BP. RNA silencing is required for Arabidopsis defence against Verticillium wilt disease. J. Exp. Bot. 60: 591-602 (2009).

Ellerstrom M, Reidt W, Ivanov R, Tiedemann J, Melzer M, Tewes A, Moritz T, Mock HP, Sitbon F, Rask L, Baumlein H. Ectopic expression of EFFECTOR OF TRANSCRIPTION perturbs gibberellin-mediated plant developmental processes. Plant Mol. Biol. 59: 663-681 (2005).

Ellis C, Karafyllidis I, Wasternack C, Turner JG. The Arabidopsis mutant cev1 links cell wall signaling to jasmonate and ethylene responses. Plant Cell 14: 1557-1566 (2002).

Ellis C, Turner JG. A conditionally fertile coi1 allele indicates cross-talk between plant hormone signalling pathways in Arabidopsis thaliana seeds and young seedlings. Planta 215: 549-556 (2002).

Ellis C, Turner JG. The Arabidopsis mutant cev1 has constitutively active jasmonate and ethylene signal pathways and enhanced resistance to pathogens. Plant Cell 13: 1025-1033 (2001).

Ellis DR, Gumaelius L, Indriolo E, Pickering IJ, Banks JA, Salt DE. A novel arsenate reductase from the arsenic hyperaccumulating fern Pteris vittata. Plant Physiol. 141: 1544-1554 (2006).

Ellis DR, Sors TG, Brunk DG, Albrecht C, Orser C, Lahner B, Wood KV, Harris HH, Pickering IJ, Salt DE. Production of Se-methylselenocysteine in transgenic plants expressing selenocysteine methyltransferase. BMC Plant Biol. 4: 1 (2004).

Ellis MH, Dennis ES, Peacock WJ. Arabidopsis roots and shoots have different mechanisms for hypoxic stress tolerance. Plant Physiol. 119: 57-64 (1999).

Elmayan T, Balzergue S, Beon F, Bourdon V, Daubremet J, Guenet Y, Mourrain P, Palauqui JC, Vernhettes S, Vialle T, Wostrikoff K, Vaucheret H. Arabidopsis mutants impaired in cosuppression. Plant Cell 10: 1747-1758 (1998).

Elo A, Lyznik A, Gonzalez DO, Kachman SD, Mackenzie SA. Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome. Plant Cell 15: 1619-1631 (2003).

Elomaa P, Uimari A, Mehto M, Albert VA, Laitinen RA, Teeri TH. Activation of anthocyanin biosynthesis in Gerbera hybrida (Asteraceae) suggests conserved protein-protein and protein-promoter interactions between the anciently diverged monocots and eudicots. Plant Physiol. 133: 1831-1842 (2003).

Elorza A, Leon G, Gomez I, Mouras A, Holuigue L, Araya A, Jordana X. Nuclear SDH2-1 and SDH2-2 genes, encoding the iron-sulfur subunit of mitochondrial complex II in Arabidopsis, have distinct cell-specific expression patterns and promoter activities. Plant Physiol. 136: 4072-4087 (2004).

Eltayeb AE, Kawano N, Badawi GH, Kaminaka H, Sanekata T, Shibahara T, Inanaga S, Tanaka K. Overexpression of monodehydroascorbate reductase in transgenic tobacco confers enhanced tolerance to ozone, salt and polyethylene glycol stresses. Planta 225: 1255-1264 (2007).

Elumalai RP, Nagpal P, Reed JW. A mutation in the Arabidopsis KT2/KUP2 potassium transporter gene affects shoot cell expansion. Plant Cell 14: 119-131 (2002).

Emanuel C, von Groll U, Muller M, Borner T, Weihe A. Development- and tissue-specific expression of the RpoT gene family of Arabidopsis encoding mitochondrial and plastid RNA polymerases. Planta 223: 998-1009 (2006).

Emborg TJ, Walker JM, Noh B, Vierstra RD. Multiple heme oxygenase family members contribute to the biosynthesis of the phytochrome chromophore in Arabidopsis. Plant Physiol. 140: 856-868 (2006).

Enami K, Ichikawa M, Uemura T, Kutsuna N, Hasezawa S, Nakagawa T, Nakano A, Sato MH. Differential expression control and polarized distribution of plasma membrane-resident SYP1 SNAREs in Arabidopsis thaliana. Plant Cell Physiol. 50: 280-289 (2009).

Encinas-Villarejo S, Maldonado AM, Amil-Ruiz F, de los Santos B, Romero F, Pliego-Alfaro F, Munoz-Blanco J, Caballero JL. Evidence for a positive regulatory role of strawberry (Fragaria x ananassa) Fa WRKY1 and Arabidopsis At WRKY75 proteins in resistance. J. Exp. Bot. 60: 3043-3065 (2009).

Endler A, Meyer S, Schelbert S, Schneider T, Weschke W, Peters SW, Keller F, Baginsky S, Martinoia E, Schmidt UG. Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach. Plant Physiol. 141: 196-207 (2006).

Endo A, Sawada Y, Takahashi H, Okamoto M, Ikegami K, Koiwai H, Seo M, Toyomasu T, Mitsuhashi W, Shinozaki K, Nakazono M, Kamiya Y, Koshiba T, Nambara E. Drought induction of Arabidopsis 9-cis-epoxycarotenoid dioxygenase occurs in vascular parenchyma cells. Plant Physiol. 147: 1984-1993 (2008).

Endo M, Matsubara H, Kokubun T, Masuko H, Takahata Y, Tsuchiya T, Fukuda H, Demura T, Watanabe M. The advantages of cDNA microarray as an effective tool for identification of reproductive organ-specific genes in a model legume, Lotus japonicus. FEBS Lett. 514: 229-237 (2002).

Endo M, Mochizuki N, Suzuki T, Nagatani A. CRYPTOCHROME2 in vascular bundles regulates flowering in Arabidopsis. Plant Cell 19: 84-93 (2007).

Endo M, Nakamura S, Araki T, Mochizuki N, Nagatani A. Phytochrome B in the mesophyll delays flowering by suppressing FLOWERING LOCUS T expression in Arabidopsis vascular bundles. Plant Cell 17: 1941-1952 (2005).

Endo N, Yoshida K, Akiyoshi M, Yoshida Y, Hayashi N. Putative UDP-galactose epimerase and metallothioneine of Paspalum vaginalum enhanced the salt tolerance of rice, Oryza sativa L. from transplanting to harvest stages. Breed. Sci. 55: 163-173 (2005).

Endo S, Pesquet E, Tashiro G, Kuriyama H, Goffner D, Fukuda H, Demura T. Transient transformation and RNA silencing in Zinnia tracheary element differentiating cell cultures. Plant J. 53: 864-875 (2008).

Endo S, Pesquet E, Yamaguchi M, Tashiro G, Sato M, Toyooka K, Nishikubo N, Udagawa-Motose M, Kubo M, Fukuda H, Demura T. Identifying new components participating in the secondary cell wall formation of vessel elements in Zinnia and Arabidopsis. Plant Cell 21: 1155-1165 (2009).

Endres S, Tenhaken R. myo-Inositol oxygenase controls the level of myo-inositol in Arabidopsis but does not increase ascorbic acid. Plant Physiol. 149: 1042-1049 (2009).

Engel ML, Chaboud A, Dumas C, McCormick S. Sperm cells of Zea mays have a complex complement of mRNAs. Plant J. 34: 697-707 (2003).

Engel ML, Holmes-Davis R, McCormick S. Green sperm. Identification of male gamete promoters in Arabidopsis. Plant Physiol. 138: 2124-2133 (2005).

Engel N, van den Daele K, Kolukisaoglu U, Morgenthal K, Weckwerth W, Parnik T, Keerberg O, Bauwe H. Deletion of glycine decarboxylase in Arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiol. 144: 1328-1335 (2007).

Engineer CB, Kranz RG. Reciprocal leaf and root expression of AtAmt1.1 and root architectural changes in response to nitrogen starvation. Plant Physiol. 143: 236-250 (2007).

Engstrom EM, Izhaki A, Bowman JL. Promoter bashing, microRNAs, and Knox genes. New Insights, regulators, and targets-of-regulation in the establishment of lateral organ polarity in Arabidopsis. Plant Physiol. 135: 685-694 (2004).

Enjuto M, Lumbreras V, Marin C, Boronat A. Expression of the Arabidopsis HMG2 gene, encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase, is restricted to meristematic and floral tissues. Plant Cell 7: 517-527 (1995).

Enns LC, Kanaoka MM, Torii KU, Comai L, Okada K, Cleland RE. Two callose synthases, GSL1 and GSL5, play an essential and redundant role in plant and pollen development and in fertility. Plant Mol. Biol. 58: 333-349 (2005).

Enot DP, Beckmann M, Overy D, Draper J. Predicting interpretability of metabolome models based on behavior, putative identity, and biological relevance of explanatory signals. Proc. Natl. Acad. Sci. U.S.A. 103: 14865-14870 (2006).

Entus R, Poling M, Herrmann KM. Redox regulation of Arabidopsis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. Plant Physiol. 129: 1866-1871 (2002).

Epelbaum S, McDevitt R, Falco SC. Lysine-ketoglutarate reductase and saccharopine dehydrogenase from Arabidopsis thaliana: nucleotide sequence and characterization. Plant Mol. Biol. 35: 735-748 (1997).

Ephritikhine G, Fellner M, Vannini C, Lapous D, Barbier-Brygoo H. The sax1 dwarf mutant of Arabidopsis thaliana shows altered sensitivity of growth responses to abscisic acid, auxin, gibberellins and ethylene and is partially rescued by exogenous brassinosteroid. Plant J. 18: 303-314 (1999).

Ephritikhine G, Pagant S, Fujioka S, Takatsuto S, Lapous D, Caboche M, Kendrick RE, Barbier-Brygoo H. The sax1 mutation defines a new locus involved in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana. Plant J. 18: 315-320 (1999).

Epimashko S, Fischer-Schliebs E, Christian AL, Thiel G, Luttge U. Na(+)/H (+)-transporter, H(+)-pumps and an aquaporin in light and heavy tonoplast membranes from organic acid and NaCl accumulating vacuoles of the annual facultative CAM plant and halophyte Mesembryanthemum crystallinum L. Planta 224: 944-951 (2006).

Epple P, Apel K, Bohlmann H. An Arabidopsis thaliana thionin gene is inducible via a signal transduction pathway different from that for pathogenesis-related proteins. Plant Physiol. 109: 813-820 (1995).

Era A, Tominaga M, Ebine K, Awai C, Saito C, Ishizaki K, Yamato KT, Kohchi T, Nakano A, Ueda T. Application of Lifeact reveals F-actin dynamics in Arabidopsis thaliana and the liverwort, Marchantia polymorpha. Plant Cell Physiol. 50: 1041-1048 (2009).

Ercetin ME, Ananieva EA, Safaee NM, Torabinejad J, Robinson JY, Gillaspy GE. A phosphatidylinositol phosphate-specific myo-inositol polyphosphate 5-phosphatase required for seedling growth. Plant Mol. Biol. 67: 375-388 (2008).

Ercetin ME, Gillaspy GE. Molecular characterization of an Arabidopsis gene encoding a phospholipid-specific inositol polyphosphate 5-phosphatase. Plant Physiol. 135: 938-946 (2004).

Eren E, Arguello JM. Arabidopsis HMA2, a divalent heavy metal-transporting P(IB)-type ATPase, is involved in cytoplasmic Zn2+ homeostasis. Plant Physiol. 136: 3712-3723 (2004).

Erikson O, Hertzberg M, Nasholm T. The dsdA gene from Escherichia coli provides a novel selectable marker for plant transformation. Plant Mol. Biol. 57: 425-433 (2005).

Erikson O, Hertzberg M, Nasholm T. A conditional marker gene allowing both positive and negative selection in plants. Nat. Biotechnol. 22: 455-458 (2004).

Eriksson ME, Hanano S, Southern MM, Hall A, Millar AJ. Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock. Planta 218: 159-162 (2003).

Eriksson S, Bohlenius H, Moritz T, Nilsson O. GA4 is the active gibberellin in the regulation of LEAFY transcription and Arabidopsis floral initiation. Plant Cell 18: 2172-2181 (2006).

Ermolaeva MD, Wu M, Eisen JA, Salzberg SL. The age of the Arabidopsis thaliana genome duplication. Plant Mol. Biol. 51: 859-866 (2003).

Ermolayev V, Weschke W, Manteuffel R. Comparison of Al-induced gene expression in sensitive and tolerant soybean cultivars. J. Exp. Bot. 54: 2745-2756 (2003).

Errakhi R, Meimoun P, Lehner A, Vidal G, Briand J, Corbineau F, Rona JP, Bouteau F. Anion channel activity is necessary to induce ethylene synthesis and programmed cell death in response to oxalic acid. J. Exp. Bot. 59: 3121-3129 (2008).

Escamilla-Trevino LL, Chen W, Card ML, Shih MC, Cheng CL, Poulton JE. Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides. Phytochemistry 67: 1651-1660 (2006).

Esch JJ, Chen MA, Hillestad M, Marks MD. Comparison of TRY and the closely related At1g01380 gene in controlling Arabidopsis trichome patterning. Plant J. 40: 860-869 (2004).

Escobar C, Hernandez LE, Jimenez A, Creissen G, Ruiz MT, Mullineaux PM. Transient expression of Arabidopsis thaliana ascorbate peroxidase 3 in Nicotiana benthamiana plants infected with recombinant potato virus X. Plant Cell Rep. 21: 699-704 (2003).

Escobar MA, Franklin KA, Svensson AS, Salter MG, Whitelam GC, Rasmusson AG. Lght regulation of the Arabidopsis respiratory chain. Multiple discrete photoreceptor responses contribute to induction of type II NAD(P)H dehydrogenase genes. Plant Physiol. 136: 2710-2721 (2004).

Escobar MA, Geisler DA, Rasmusson AG. Reorganization of the alternative pathways of the Arabidopsis respiratory chain by nitrogen supply: opposing effects of ammonium and nitrate. Plant J. 45: 775-788 (2006).

Espinosa-Ruiz A, Belles JM, Serrano R, Culianez-MacIa FA. Arabidopsis thaliana AtHAL3: a flavoprotein related to salt and osmotic tolerance and plant growth. Plant J. 20: 529-539 (1999).

Espinosa-Soto C, Padilla-Longoria P, Alvarez-Buylla ER. A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles. Plant Cell 16: 2923-2939 (2004).

Espunya MC, Diaz M, Moreno-Romero J, Martinez MC. Modification of intracellular levels of glutathione-dependent formaldehyde dehydrogenase alters glutathione homeostasis and root development. Plant Cell Environ. 29: 1002-1011 (2006).

Essah PA, Davenport R, Tester M. Sodium influx and accumulation in Arabidopsis. Plant Physiol. 133: 307-318 (2003).

Essigmann B, Hespenheide BM, Kuhn LA, Benning C. Prediction of the active-site structure and NAD(+) binding in SQD1, a protein essential for sulfolipid biosynthesis in Arabidopsis. Arch. Biochem. Biophys. 369: 30-41 (1999).

Estelle M. Proteases and cellular regulation in plants. Curr. Opin. Plant Biol. 4: 254-260 (2001).

Estevez JM, Cantero A, Romero C, Kawaide H, Jimenez LF, Kuzuyama T, Seto H, Kamiya Y, Leon P. Analysis of the expression of CLA1, a gene that encodes the 1-deoxyxylulose 5-phosphate synthase of the 2-C-methyl-D-erythritol-4-phosphate pathway in Arabidopsis. Plant Physiol. 124: 95-104 (2000).

Estevez JM, Kieliszewski MJ, Khitrov N, Somerville C. Characterization of synthetic hydroxyproline-rich proteoglycans with arabinogalactan protein and extensin motifs in Arabidopsis. Plant Physiol. 142: 458-470 (2006).

Etheridge N, Chen YF, Schaller GE. Dissecting the ethylene pathway of Arabidopsis. Brief Funct. Genomic. Proteomic. 3: 372-381 (2005).

Eubel H, Jansch L, Braun HP. New insights into the respiratory chain of plant mitochondria. Supercomplexes and a unique composition of complex II. Plant Physiol. 133: 274-286 (2003).

Eubel H, Lee CP, Kuo J, Meyer EH, Taylor NL, Millar AH. Free-flow electrophoresis for purification of plant mitochondria by surface charge. Plant J. 52: 583-594 (2007).

Eubel H, Meyer EH, Taylor NL, Bussell JD, O'Toole N, Heazlewood JL, Castleden I, Small ID, Smith SM, Millar AH. Novel proteins, putative membrane transporters and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes. Plant Physiol. 148: 1809-1829 (2008).

Eudes A, Bozzo GG, Waller JC, Naponelli V, Lim EK, Bowles DJ, Gregory JF 3rd, Hanson AD. Metabolism of the folate precursor p-aminobenzoate in plants: glucose ester formation and vacuolar storage. J. Biol. Chem. 283: 15451-15459 (2008).

Eudes A, Mouille G, Thevenin J, Minic Z, Jouanin L. Purification, cloning and functional characterization of an endogenous beta-glucuronidase in Arabidopsis thaliana. Plant Cell Physiol. 49: 1331-1341 (2008).

Eudes A, Pollet B, Sibout R, Do CT, Seguin A, Lapierre C, Jouanin L. Evidence for a role of AtCAD 1 in lignification of elongating stems of Arabidopsis thaliana. Planta 225: 23-39 (2006).

Eulgem T. Regulation of the Arabidopsis defense transcriptome. Trends Plant Sci. 10: 71-78 (2005).

Eulgem T, Tsuchiya T, Wang XJ, Beasley B, Cuzick A, Tör M, Zhu T, McDowell JM, Holub E, Dangl JL. EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels. Plant J. 49: 829-839 (2007).

Eulgem T, Weigman VJ, Chang HS, McDowell JM, Holub EB, Glazebrook J, Zhu T, Dangl JL. Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance. Plant Physiol. 135: 1129-1144 (2004).

EUROPEAN UNION CHROMOSOME 3 ARABIDOPSIS GENOME SEQUENCING CONSORTIUM, THE INSTITUTE FOR GENOMIC RESEARCH & KAZUSA DNA RESEARCH INSTITUTE. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Nature 408: 820-823 (2000).

Evans NH, McAinsh MR, Hetherington AM, Knight MR. ROS perception in Arabidopsis thaliana: the ozone-induced calcium response. Plant J. 41: 615-626 (2005).

Ewald R, Kolukisaoglu U, Bauwe U, Mikkat S, Bauwe H. Mitochondrial protein lipoylation does not exclusively depend on the mtKAS pathway of de-novo fatty acid synthesis in Arabidopsis. Plant Physiol. 145: 41-48 (2007).

Ezaki B, Gardner RC, Ezaki Y, Matsumoto H. Expression of aluminum-induced genes in transgenic Arabidopsis plants can ameliorate aluminum stress and/or oxidative stress. Plant Physiol. 122: 657-666 (2000).

Ezaki B, Katsuhara M, Kawamura M, Matsumoto H. Different mechanisms of four aluminum (Al)-resistant transgenes for Al toxicity in Arabidopsis. Plant Physiol. 127: 918-927 (2001).

Ezaki B, Sasaki K, Matsumoto H, Nakashima S. Functions of two genes in aluminium (Al) stress resistance: repression of oxidative damage by the AtBCB gene and promotion of efflux of Al ions by the NtGDI1gene. J. Exp. Bot. 56: 2661-2671 (2005).

Ezaki B, Suzuki M, Motoda H, Kawamura M, Nakashima S, Matsumoto H. Mechanism of gene expression of Arabidopsis glutathione S-transferase, AtGST1, and AtGST11 in response to aluminum stress. Plant Physiol. 134: 1672-1682 (2004).

Ezhova TA, Soldatova OP, Mamanova LB, Musin SM, Grimm B, Shestakov SV. Collection of Arabidopsis thaliana mutants with altered sensitivity to oxidative stress inductors. Izv. Akad. Nauk. Ser. Biol. 5: 533-543 (2001).

Ezura H, Harberd NP. Endogenous gibberellin levels influence in-vitro shoot regeneration in Arabidopsis thaliana (L.) Heynh. Planta 197: 301-305 (1995).

Fabienne M, Benoît R, Martine C, Bruno S, Jean-Philippe G, Didier A. Mutations in AtCML9, a calmodulin-like protein from A. thaliana, alter plant responses to abiotic stress and abscisic acid. Plant J. 56: 575-589 (2008).

Fabre N, Reiter IM, Becuwe-Linka N, Genty B, Rumeau D. Characterization and expression analysis of genes encoding alpha and beta carbonic anhydrases in Arabidopsis. Plant Cell Environ. 30: 617-629 (2007).

Facchini PJ, Bird DA, St-Pierre B. Can Arabidopsis make complex alkaloids? Trends Plant Sci. 9: 116-122 (2004).

Fahey JW, Zalcmann AT, Talalay P. The chemical diversity and distribution of glucosinolates and isothiocyanates among plants. Phytochemistry 56: 5-51 (2001).

Fahnenstich H, Scarpeci TE, Valle EM, Flugge UI, Maurino VG. Generation of hydrogen peroxide in chloroplasts of Arabidopsis thaliana overexpressing glycolate oxidase as an inducible system to study oxidative stress. Plant Physiol. 148: 719-729 (2008).

Faigon-Soverna A, Harmon FG, Storani L, Karayekov E, Staneloni RJ, Gassmann W, Mas P, Casal JJ, Kay SA, Yanovsky MJ. A constitutive shade-avoidance mutant implicates TIR-NBS-LRR proteins in Arabidopsis photomorphogenic development. Plant Cell 18: 2919-2928 (2006).

Fait A, Angelovici R, Less H, Ohad I, Urbanczyk-Wochniak E, Fernie AR, Galili G. Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol. 142: 839-854 (2006).

Fait A, Yellin A, Fromm H. GABA shunt deficiencies and accumulation of reactive oxygen intermediates: insight from Arabidopsis mutants. FEBS Lett. 579: 415-420 (2005).

Falcone A, Nelissen H, Fleury D, Van Lijsebettens M, Bitonti MB. Cytological investigations of the Arabidopsis thaliana elo1 mutant give new insights into leaf lateral growth and elongator function. Ann. Bot. (Lond.) 100: 261-270 (2007).

Falcone DL, Gibson S, Lemieux B, Somerville C. Identification of a gene that complements an Arabidopsis mutant deficient in chloroplast omega 6 desaturase activity. Plant Physiol. 106: 1453-1459 (1994).

Faldt J, Arimura G, Gershenzon J, Takabayashi J, Bohlmann J. Functional identification of AtTPS03 as ( E)-beta-ocimene synthase: a monoterpene synthase catalyzing jasmonate- and wound-induced volatile formation in Arabidopsis thaliana. Planta 216: 745-751 (2003).

Falk J, Andersen G, Kernebeck B, Krupinska K. Constitutive overexpression of barley 4-hydroxyphenylpyruvate dioxygenase in tobacco results in elevation of the vitamin E content in seeds but not in leaves. FEBS Lett. 540: 35-40 (2003).

Falkenberg B, Witt I, Zanor MI, Steinhauser D, Mueller-Roeber B, Hesse H, Hoefgen R. Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. J. Exp. Bot. 59: 2831-2846 (2008).

Fallahi H, Scofield GN, Badger MR, Chow WS, Furbank RT, Ruan YL. Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development. J. Exp. Bot. 59: 3283-3295 (2008).

Fambrini M, Durante C, Cionini G, Geri C, Giorgetti L, Michelotti V, Salvini M, Pugliesi C. Characterization of LEAFY COTYLEDON1-LIKE gene in Helianthus annuus and its relationship with zygotic and somatic embryogenesis. Dev. Genes Evol. 216: 253-264 (2006).

Fan J, Crooks C, Lamb C. High-throughput quantitative luminescence assay of the growth in planta of Pseudomonas syringae chromosomally tagged with Photorhabdus luminescens luxCDABE. Plant J. 53: 393-399 (2008).

Fan J, Quan S, Orth T, Awai C, Chory J, Hu J. The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. Plant Physiol. 139: 231-239 (2005).

Fan L, Zheng S, Cui D, Wang X. Subcellular distribution and tissue expression of phospholipase dalpha, dbeta, and dgamma in Arabidopsis. Plant Physiol. 119: 1371-1378 (1999).

Fan L, Zheng S, Wang X. Antisense suppression of phospholipase D alpha retards abscisic acid- and ethylene-promoted senescence of postharvest Arabidopsis leaves. Plant Cell 9: 2183-2196 (1997).

Fan W, Dong X. In vivo interaction between NPR1 and transcription factor TGA2 leads to salicylic acid-mediated gene activation in Arabidopsis. Plant Cell 14: 1377-1389 (2002).

Fang SC, Fernandez DE. Effect of regulated overexpression of the MADS domain factor AGL15 on flower senescence and fruit maturation. Plant Physiol. 130: 78-89 (2002).

Fang Z, Kamasani U, Berkowitz GA. Molecular cloning and expression characterization of a rice K+ channel beta subunit. Plant Mol. Biol. 37: 597-606 (1998).

Fankhauser C, Casal JJ. Phenotypic characterization of a photomorphogenic mutant. Plant J. 39: 747-760 (2004).

Fankhauser C, Chory J. RSF1, an Arabidopsis locus implicated in phytochrome A signaling. Plant Physiol. 124: 39-46 (2000).

Fankhauser C, Staiger D. Photoreceptors in Arabidopsis thaliana: light perception, signal transduction and entrainment of the endogenous clock. Planta 216: 1-16 (2002).

Farag MA, Ryu CM, Sumner LW, Pare PW. GC-MS SPME profiling of rhizobacterial volatiles reveals prospective inducers of growth promotion and induced systemic resistance in plants. Phytochemistry 67: 2262-2268 (2006).

Farage-Barhom S, Burd S, Sonego L, Perl-Treves R, Lers A. Expression analysis of the BFN1 nuclease gene promoter during senescence, abscission, and programmed cell death-related processes. J. Exp. Bot. 59: 3247-3258 (2008).

Farkas I, Dombradi V, Miskei M, Szabados L, Koncz C. Arabidopsis PPP family of serine/threonine phosphatases. Trends Plant Sci. 12: 169-176 (2007).

Farmer EE, Weber H, Vollenweider S. Fatty acid signaling in Arabidopsis. Planta 206: 167-174 (1998).

Farrar K, Evans IM, Topping JF, Souter MA, Nielsen JE, Lindsey K. EXORDIUM--a gene expressed in proliferating cells and with a role in meristem function, identified by promoter trapping in Arabidopsis. Plant J. 33: 61-73 (2003).

Farre EM, Kay SA. PRR7 protein levels are regulated by light and the circadian clock in Arabidopsis. Plant J. 52: 548-560 (2007).

Fatland BL, Ke J, Anderson MD, Mentzen WI, Cui LW, Allred CC, Johnston JL, Nikolau BJ, Wurtele ES. Molecular characterization of a heteromeric ATP-citrate lyase that generates cytosolic acetyl-coenzyme A in Arabidopsis. Plant Physiol. 130: 740-756 (2002).

Fatland BL, Nikolau BJ, Wurtele ES. Reverse genetic characterization of cytosolic acetyl-CoA generation by ATP-citrate lyase in Arabidopsis. Plant Cell 17: 182-203 (2005).

Fauconnier ML, Williams TD, Marlier M, Welti R. Potato tuber phospholipids contain colneleic acid in the 2- position. FEBS Lett. 538: 155-158 (2003).

Fauteux F, Chain F, Belzile F, Menzies JG, Belanger RR. The protective role of silicon in the Arabidopsis-powdery mildew pathosystem. Proc. Natl. Acad. Sci. U.S.A. 103: 17554-17559 (2006).

Favaro R, Pinyopich A, Battaglia R, Kooiker M, Borghi L, Ditta G, Yanofsky MF, Kater MM, Colombo L. MADS-box protein complexes control carpel and ovule development in Arabidopsis. Plant Cell 15: 2603-2611 (2003).

Favery B, Chelysheva LA, Lebris M, Jammes F, Marmagne A, De Almeida-Engler J, Lecomte P, Vaury C, Arkowitz RA, Abad P. Arabidopsis formin AtFH6 is a plasma membrane-associated protein upregulated in giant cells induced by parasitic nematodes. Plant Cell 16: 2529-2540 (2004).

Federspiel N. Deciphering a weed. Genomic sequencing of Arabidopsis. Plant Physiol. 124: 1456-1459 (2000).

Fedina IS, Georgieva K, Grigorova I. Light-dark changes in proline content of barley leaves under salt stress. Biol. Plant. 45: 59-63 (2002).

Fedoroff NV, Smith DL. A versatile system for detecting transposition in Arabidopsis. Plant J. 3: 273-289 (1993).

Fedorova E, Thomson R, Whitehead LF, Maudoux O, Udvardi MK, Day DA. Localization of H(+)-ATPases in soybean root nodules. Planta 209: 25-32 (1999).

Fedorova M, Van De Mortel J, Matsumoto PA, Cho J, Town CD, VandenBosch KA, Gantt JS, Vance CP. Genome-wide identification of nodule-specific transcripts in the model legume Medicago truncatula. Plant Physiol. 130: 519-537 (2002).

Fehr M, Ehrhardt DW, Lalonde S, Frommer WB. Minimally invasive dynamic imaging of ions and metabolites in living cells. Curr. Opin. Plant Biol. 7: 345-351 (2004).

Fei H, Zhang R, Pharis RP, Sawhney VK. Pleiotropic effects of the male sterile33 (ms33) mutation in Arabidopsis are associated with modifications in endogenous gibberellins, indole-3-acetic acid and abscisic acid. Planta 219: 649-660 (2004).

Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ. Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J. 40: 47-59 (2004).

Feild TS, Sage TL, Czerniak C, Iles WJD. Hydathodal leaf teeth of Chloranthus japonicus (Chloranthaceae) prevent guttation-induced flooding of the mesophyll. Plant Cell Environ. 28: 1179-1190 (2005).

Feinbaum RL, Ausubel FM. Transcriptional regulation of the Arabidopsis thaliana chalcone synthase gene. Mol. Cell Biol. 8: 1985-1992 (1988).

Feldbrugge M, Arizti P, Sulliva ML, Zamore PD, Belasco JG, Gree PJ. Comparative analysis of the plant mRNA-destabilizing element, DST, in mammalian and tobacco cells. Plant Mol. Biol. 49: 215-223 (2002).

Fellbrich G, Romanski A, Varet A, Blume B, Brunner F, Engelhardt S, Felix G, Kemmerling B, Krzymowska M, Nurnberger T. NPP1, a Phytophthora-associated trigger of plant defense in parsley and Arabidopsis. Plant J. 32: 375-390 (2002).

Fellenberg C, Milkowski C, Hause B, Lange PR, Böttcher CT, Schmidt J, Vogt T. Tapetum specific location of a cation-dependent O-methyltransferase in Arabidopsis thaliana. Plant J. 56: 132-145 (2008).

Feng H, An F, Zhang S, Ji Z, Ling HQ, Zuo J. Light-regulated, tissue-specific, and cell differentiation-specific expression of the Arabidopsis Fe(III)-chelate reductase gene AtFRO6. Plant Physiol. 140: 1345-1354 (2006).

Feng H, Chen Q, Feng J, Zhang J, Yang X, Zuo J. Functional characterization of the Arabidopsis eukaryotic translation initiation factor 5A-2 that plays a crucial role in plant growth and development by regulating cell division, cell growth, and cell death. Plant Physiol. 144: 1531-1545 (2007).

Feng JX, Liu D, Pan Y, Gong W, Ma LG, Luo JC, Deng XW, Zhu YX. An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol. Biol. 59: 853-868 (2005).

Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW. Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein degradation. Plant Cell 16: 1870-1882 (2004).

Feng XL, Ni WM, Elge S, Mueller-Roeber B, Xu ZH, Xue HW. Auxin flow in anther filaments is critical for pollen grain development through regulating pollen mitosis. Plant Mol. Biol. 61: 215-226 (2006).

Feraud M, Masclaux-Daubresse C, Ferrario-Mery S, Pageau K, Lelandais M, Ziegler C, Leboeuf E, Jouglet T, Viret L, Spampinato A, Paganelli V, Hammouda MB, Suzuki A. Expression of a ferredoxin-dependent glutamate synthase gene in mesophyll and vascular cells and functions of the enzyme in ammonium assimilation in Nicotiana tabacum (L.). Planta 222: 667-677 (2005).

Ferjani A, Horiguchi G, Yano S, Tsukaya H. Analysis of leaf development in fugu mutants of Arabidopsis reveals three compensation modes that modulate cell expansion in determinate organs. Plant Physiol. 144: 988-999 (2007).

Ferl RJ. 14-3-3 proteins: regulation of signal-induced events. Physiol. Plant. 120: 173-178 (2004).

Fernandez DE, Heck GR, Perry SE, Patterson SE, Bleecker AB, Fang SC. The embryo MADS domain factor AGL15 acts postembryonically. Inhibition of perianth senescence and abscission via constitutive expression. Plant Cell 12: 183-198 (2000).

Fernandez E, Schnell R, Ranum LP, Hussey SC, Silflow CD, Lefebvre PA. Isolation and characterization of the nitrate reductase structural gene of Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. U.S.A. 86: 6449-6453 (1989).

Ferrandiz C. Regulation of fruit dehiscence in Arabidopsis. J. Exp. Bot. 53: 2031-2038 (2002).

Ferrandiz C, Pelaz S, Yanofsky MF. Control of carpel and fruit development in Arabidopsis. Annu. Rev. Biochem. 68: 321-354 (1999).

Ferrari S, Plotnikova JM, De Lorenzo G, Ausubel FM. Arabidopsis local resistance to Botrytis cinerea involves salicylic acid and camalexin and requires EDS4 and PAD2, but not SID2, EDS5 or PAD4. Plant J. 35: 193-205 (2003).

Ferrari S, Vairo D, Ausubel FM, Cervone F, De Lorenzo G. Tandemly duplicated Arabidopsis genes that encode polygalacturonase-inhibiting proteins are regulated coordinately by different signal transduction pathways in response to fungal infection. Plant Cell 15: 93-106 (2003).

Ferrario S, Busscher J, Franken J, Gerats T, Vandenbussche M, Angenent GC, Immink RG. Ectopic expression of the petunia MADS box gene UNSHAVEN accelerates flowering and confers leaf-like characteristics to floral organs in a dominant-negative manner. Plant Cell 16: 1490-1505 (2004).

Ferrario S, Immink RG, Shchennikova A, Busscher-Lange J, Angenent GC. The MADS box gene FBP2 is required for SEPALLATA function in petunia. Plant Cell 15: 914-925 (2003).

Ferrario S, Shchennikova AV, Franken J, Immink RG, Angenent GC. Control of floral meristem determinacy in Petunia by MADS box transcription factors. Plant Physiol. 140: 890-898 (2006).

Ferrario-Mery S, Bouvet M, Leleu O, Savino G, Hodges M, Meyer C. Physiological characterisation of Arabidopsis mutants affected in the expression of the putative regulatory protein PII. Planta 223: 28-39 (2005).

Ferrario-Mery S, Hodges M, Hirel B, Foyer CH. Photorespiration-dependent increases in phosphoenolpyruvate carboxylase, isocitrate dehydrogenase and glutamate dehydrogenase in transformed tobacco plants deficient in ferredoxin-dependent glutamine-alpha-ketoglutarate aminotransferase. Planta 214: 877-886 (2002).

Ferrol N, Belver A, Roldan M, Rodriguez-Rosales MP, Donaire JP. Effects of boron on proton transport and membrane properties of sunflower (Helianthus annuus L.) cell microsomes. Plant Physiol. 103: 763-769 (1993).

Fett JP, Coleman JR. Characterization and expression of two cDNAs encoding carbonic anhydrase in Arabidopsis thaliana. Plant Physiol. 105: 707-713 (1994).

Fettke J, Chia T, Eckermann N, Smith A, Steup M. A transglucosidase necessary for starch degradation and maltose metabolism in leaves at night acts on cytosolic heteroglycans (SHG). Plant J. 46: 668-684 (2006).

Fettke J, Eckermann N, Poeste S, Pauly M, Steup M. The glycan substrate of the cytosolic (Pho 2) phosphorylase isozyme from Pisum sativum L.: identification, linkage analysis and subcellular localization. Plant J. 39: 933-946 (2004).

Fettke J, Eckermann N, Tiessen A, Geigenberger P, Steup M. Identification, subcellular localization and biochemical characterization of water-soluble heteroglycans (SHG) in leaves of Arabidopsis thaliana L.: distinct SHG reside in the cytosol and in the apoplast. Plant J. 43: 568-585 (2005).

Feys BJ, Wiermer M, Bhat RA, Moisan LJ, Medina-Escobar N, Neu C, Cabral A, Parker JE. Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity. Plant Cell 17: 2601-2613 (2005).

Fido RJ. Isolation and partial amino acid sequence of domains of nitrate reductase from spinach. Phytochemistry 30: 3519-3523 (1991).

Fiebig A, Mayfield JA, Miley NL, Chau S, Fischer RL, Preuss D. Alterations in CER6, a gene identical to CUT1, differentially affect long-chain lipid content on the surface of pollen and stems. Plant Cell 12: 2001-2008 (2000).

Fiehn O, Kopka J, Dormann P, Altmann T, Trethewey RN, Willmitzer L. Metabolite profiling for plant functional genomics. Nat. Biotechnol. 18: 1157-1161 (2000).

Fiehn O, Wohlgemuth G, Scholz M, Kind T, Lee do Y, Lu Y, Moon S, Nikolau B. Quality control for plant metabolomics: reporting MSI-compliant studies. Plant J. 53: 691-704 (2008).

Field B, Cardon G, Traka M, Botterman J, Vancanneyt G, Mithen R. Glucosinolate and amino acid biosynthesis in Arabidopsis. Plant Physiol. 135: 828-839 (2004).

Field B, Furniss C, Wilkinson A, Mithen R. Expression of a Brassica isopropylmalate synthase gene in Arabidopsis perturbs both glucosinolate and amino acid metabolism. Plant Mol. Biol. 60: 717-727 (2006).

Fiers M, Golemiec E, van der Schors R, van der Geest L, Li KW, Stiekema WJ, Liu CM. The CLV3/ESR motif of CLV3 is functionally independent from the non-conserved flanking sequences. Plant Physiol. 141: 1284-1292 (2006).

Fiers M, Golemiec E, Xu J, van der Geest L, Heidstra R, Stiekema W, Liu CM. The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathway. Plant Cell 17: 2542-2553 (2005).

Fiers M, Hause G, Boutilier K, Casamitjana-Martinez E, Weijers D, Offringa R, van der Geest L, van Lookeren Campagne M, Liu CM. Mis-expression of the CLV3/ESR-like gene CLE19 in Arabidopsis leads to a consumption of root meristem. Gene 327: 37-49 (2004).

Fiers M, Ku KL, Liu CM. CLE peptide ligands and their roles in establishing meristems. Curr. Opin. Plant Biol. 10: 39-43 (2007).

Figueroa P, Gusmaroli G, Serino G, Habashi J, Ma L, Shen Y, Feng S, Bostick M, Callis J, Hellmann H, Deng XW. Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. Plant Cell 17: 1180-1195 (2005).

Figueroa P, Leon G, Elorza A, Holuigue L, Araya A, Jordana X. The four subunits of mitochondrial respiratory complex II are encoded by multiple nuclear genes and targeted to mitochondria in Arabidopsis thaliana. Plant Mol. Biol. 50: 725-734 (2002).

Figueroa P, Leon G, Elorza A, Holuigue L, Jordana X. Three different genes encode the iron-sulfur subunit of succinate dehydrogenase in Arabidopsis thaliana. Plant Mol. Biol. 46: 241-250 (2001).

Figueroa-Balderas RE, Garcia-Ponce B, Rocha-Sosa M. Hormonal and stress induction of the gene encoding common bean acetyl-coenzyme A carboxylase. Plant Physiol. 142: 609-619 (2006).

Filardo F, Robertson M, Singh DP, Parish RW, Swain SM. Functional analysis of HvSPY, a negative regulator of GA response, in barley aleurone cells and Arabidopsis. Planta 229: 523-537 (2009).

Filichkin SA, Leonard JM, Monteros A, Liu PP, Nonogaki H. A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development. Plant Physiol. 134: 1080-1087 (2004).

Filkowski J, Kovalchuk O, Kovalchuk I. Genome stability of vtc1, tt4, and tt5 Arabidopsis thaliana mutants impaired in protection against oxidative stress. Plant J. 38: 60-69 (2004).

Filleur S, Daniel-Vedele F. Expression analysis of a high-affinity nitrate transporter isolated from Arabidopsis thaliana by differential display. Planta 207: 461-469 (1999).

Fillion L, Ageorges A, Picaud S, Coutos-Thevenot P, Lemoine R, Romieu C, Delrot S. Cloning and expression of a hexose transporter gene expressed during the ripening of grape berry. Plant Physiol. 120: 1083-1094 (1999).

Finch-Savage WE, Cadman CS, Toorop PE, Lynn JR, Hilhorst HW. Seed dormancy release in Arabidopsis Cvi by dry after-ripening, low temperature, nitrate and light shows common quantitative patterns of gene expression directed by environmentally specific sensing. Plant J. 51: 60-78 (2007).

Finch-Savage WE, Come D, Lynn JR, Corbineau F. Sensitivity of Brassica oleracea seed germination to hypoxia: a QTL analysis. Plant Sci. 169: 753-759 (2005).

Finkelstei D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S. Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium. Plant Mol. Biol. 48: 119-131 (2002).

Finkelstein RR. Abscisic acid-insensitive mutations provide evidence for stage-specific signal pathways regulating expression of an Arabidopsis late embryogenesis-abundant (lea) gene. Mol. Gen. Genet. 238: 401-408 (1993).

Finkelstein RR, Lynch TJ. Abscisic acid inhibition of radicle emergence but not seedling growth is suppressed by sugars. Plant Physiol. 122: 1179-1186 (2000).

Finkelstein RR, Lynch TJ. The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell 12: 599-610 (2000).

Finkelstein RR, Wang ML, Lynch TJ, Rao S, Goodman HM. The Arabidopsis abscisic acid response locus ABI4 encodes an APETALA 2 domain protein. Plant Cell 10: 1043-1054 (1998).

Finkemeier I, Goodman M, Lamkemeyer P, Kandlbinder A, Sweetlove LJ, Dietz KJ. The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress. J. Biol. Chem. 280: 12168-12180 (2005).

Finkemeier I, Kluge C, Metwally A, Georgi M, Grotjohann N, Dietz KJ. Alterations in Cd-induced gene expression under nitrogen deficiency in Hordeum vulgare. Plant Cell Environ. 26: 821-833 (2003).

Finnegan EJ, Dennis ES. Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana. Nucleic Acids Res. 21: 2383-2388 (1993).

Finnegan EJ, Genger RK, Peacock WJ, Dennis ES. DNA methylation in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49: 223-247 (1998).

Finnegan EJ, Kovac KA. Plant DNA methyltransferases. Plant Mol. Biol. 43: 189-201 (2000).

Fiorani F, Umbach AL, Siedow JN. The alternative oxidase of plant mitochondria is involved in the acclimation of shoot growth at low temperature. A study of Arabidopsis AOX1a transgenic plants. Plant Physiol. 139: 1795-1805 (2005).

Fischer R, Drossard J, Schillberg S, Artsaenko O, Emans N, Naehring JM. Chapter 5. Modulation of Plant Function and Plant Pathogens by Antibody Expression. In "Metabolic Engineering of Plant Secondary Metabolism" (Verpoorte R, Alfermann AW, eds), Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 87-109 (2000).

Fischer U, Kuhlmann M, Pecinka A, Schmidt R, Mette MF. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant J. 53: 1-10 (2008).

Fitchette AC, Cabanes-Macheteau M, Marvin L, Martin B, Satiat-Jeunemaitre B, Gomord V, Crooks K, Lerouge P, Faye L, Hawes C. Biosynthesis and immunolocalization of Lewis a-containing N-glycans in the plant cell. Plant Physiol. 121: 333-344 (1999).

Fitter DW, Martin DJ, Copley MJ, Scotland RW, Langdale JA. GLK gene pairs regulate chloroplast development in diverse plant species. Plant J. 31: 713-727 (2002).

Fittinghoff K, Laubinger S, Nixdorf M, Fackendahl P, Baumgardt RL, Batschauer A, Hoecker U. Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth. Plant J. 47: 577-590 (2006).

Fitzgerald HA, Canlas PE, Chern MS, Ronald PC. Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae. Plant J. 43: 335-347 (2005).

Fitzgerald HA, Chern MS, Navarre R, Ronald PC. Overexpression of (At)NPR1 in rice leads to a BTH- and environment-induced lesion-mimic/cell death phenotype. Mol. Plant-Microbe Interact. 17: 140-151 (2004).

Fitzpatrick LM, Keegstra K. A method for isolating a high yield of Arabidopsis chloroplasts capable of efficient import of precursor proteins. Plant J. 27: 59-65 (2001).

Fizames C, Munos S, Cazettes C, Nacry P, Boucherez J, Gaymard F, Piquemal D, Delorme V, Commes T, Doumas P, Cooke R, Marti J, Sentenac H, Gojon A. The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence. Plant Physiol. 134: 67-80 (2004).

Flanders DJ, Weng S, Petel FX, Cherry JM. AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative. Nucleic Acids Res. 26: 80-84 (1998).

Fleck B, Harberd NP. Evidence that the Arabidopsis nuclear gibberellin signalling protein GAI is not destabilised by gibberellin. Plant J. 32: 935-947 (2002).

Fleet CM, Yamaguchi S, Hanada A, Kawaide H, David CJ, Kamiya Y, Sun TP. Overexpression of AtCPS and AtKS in Arabidopsis confers increased ent-kaurene production but no increase in bioactive gibberellins. Plant Physiol. 132: 830-839 (2003).

Fletcher JC. Shoot and floral meristem maintenance in Arabidopsis. Annu. Rev. Plant Biol. 53: 45-66 (2002).

Fleury D, Himanen K, Cnops G, Nelissen H, Boccardi TM, Maere S, Beemster GT, Neyt P, Anami S, Robles P, Micol JL, Inze D, Van Lijsebettens M. The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth. Plant Cell 19: 417-432 (2007).

Flint-Garcia SA, Thornsberry JM, Buckler IV ES. Structure of linkage disequilibrium in plants. Annu. Rev. Plant Biol. 54: 357-374 (2003).

Flores T, Todd CD, Tovar-Mendez A, Dhanoa PK, Correa-Aragunde N, Hoyos ME, Brownfield DM, Mullen RT, Lamattina L, Polacco JC. Arginase-negative mutants of Arabidopsis exhibit increased NO signaling in root development. Plant Physiol. 147: 1936-1946 (2008).

Flors C, Fryer MJ, Waring J, Reeder B, Bechtold U, Mullineaux PM, Nonell S, Wilson MT, Baker NR. Imaging the production of singlet oxygen in vivo using a new fluorescent sensor, Singlet Oxygen Sensor Green(R). J. Exp. Bot. 57: 1725-1734 (2006).

Flors V, Ton J, van Doorn R, Jakab G, García-Agustín P, Mauch-Mani B. Interplay between JA, SA and ABA signalling during basal and induced resistance against Pseudomonas syringae and Alternaria brassicicola. Plant J. 54: 81-92 (2008).

Fluckiger R, De Caroli M, Piro G, Dalessandro G, Neuhaus JM, Di Sansebastiano GP. Vacuolar system distribution in Arabidopsis tissues, visualized using GFP fusion proteins. J. Exp. Bot. 54: 1577-1584 (2003).

Focke M, Gieringer E, Schwan S, Jansch L, Binder S, Braun HP. Fatty acid biosynthesis in mitochondria of grasses: malonyl-coenzyme A is generated by a mitochondrial localized acetyl-coenzyme A carboxylase. Plant Physiol. 133: 875-884 (2003).

Focks N, Benning C. wrinkled1: A novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism. Plant Physiol. 118: 91-101 (1998).

Focks N, Sagasser M, Weisshaar B, Benning C. Characterization of tt15, a novel transparent testa mutant of Arabidopsis thaliana (L.) Heynh. Planta 208: 352-357 (1999).

Fode B, Siemsen T, Thurow C, Weigel R, Gatz C. The Arabidopsis GRAS protein SCL14 interacts with class II TGA transcription factors and is essential for the activation of stress-inducible promoters. Plant Cell 20: 3122-3135 (2008).

Fofana IB, Sangare A, Collier R, Taylor C, Fauquet CM. A geminivirus-induced gene silencing system for gene function validation in cassava. Plant Mol. Biol. 56: 613-624 (2004).

Foley RC, Sappl PG, Perl-Treves R, Millar AH, Singh KB. Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner. Plant Physiol. 142: 245-253 (2006).

Folta KM. Green light stimulates early stem elongation, antagonizing light-mediated growth inhibition. Plant Physiol. 135: 1407-1416 (2004).

Folta KM, Kaufman LS. Regions of the pea Lhcb1*4 promoter necessary for blue-light regulation in transgenic Arabidopsis. Plant Physiol. 120: 747-756 (1999).

Folta KM, Kaufman LS. Phototropin 1 is required for high-fluence blue-light-mediated mRNA destabilization. Plant Mol. Biol. 51: 609-618 (2003).

Folta KM, Pontin MA, Karlin-Neumann G, Bottini R, Spalding EP. Genomic and physiological studies of early cryptochrome 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light. Plant J. 36: 203-214 (2003).

Fontaine JX, Saladino F, Agrimonti C, Bedu M, Terce-Laforgue T, Tetu T, Hirel B, Restivo FM, Dubois F. Control of the synthesis and of the subcellular targeting of the two GDH genes products in leaves and stems of Nicotiana plumbaginifolia and Arabidopsis thaliana. Plant Cell Physiol. 47: 410-418 (2006).

Fontaine V, Hartwell J, Jenkins GI, Nimmo HG. Arabidopsis thaliana contains two phosphoenolpyruvate carboxylase kinase genes with different expression patterns. Plant Cell Environ. 25: 115-122 (2002).

Foo E, Morris SE, Parmenter K, Young N, Wang H, Jones A, Rameau C, Turnbull CG, Beveridge CA. Feedback regulation of xylem cytokinin content is conserved in pea and Arabidopsis. Plant Physiol. 143: 1418-1428 (2007).

Footitt S, Dietrich D, Fait A, Fernie AR, Holdsworth MJ, Baker A, Theodoulou FL. The COMATOSE ABC transporter is required for full fertility in Arabidopsis. Plant Physiol. 144: 1467-1480 (2007).

Footitt S, Marquez J, Schmuths H, Baker A, Theodoulou FL, Holdsworth M. Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis. J. Exp. Bot. 57: 2805-2814 (2006).

Forde BG. Nitrate transporters in plants: structure, function and regulation. Biochim. Biophys. Acta 1465: 219-235 (2000).

Forde BG, Walch-Liu P. Nitrate and glutamate as environmental cues for behavioural responses in plant roots. Plant Cell Environ. 32: 682-693 (2009).

Fordham-Skelton AP, Skipsey M, Eveans IM, Edwards R, Gatehouse JA. Higher plant tyrosine-specific protein phosphatases (PTPs) contain novel amino-terminal domains: expression during embryogenesis. Plant Mol. Biol. 39: 593-605 (1999).

Foresti O, daSilva LL, Denecke J. Overexpression of the Arabidopsis syntaxin PEP12/SYP21 inhibits transport from the prevacuolar compartment to the lytic vacuole in vivo. Plant Cell 18: 2275-2293 (2006).

Forlani G. Differential expression of 5-enol-pyruvyl-shikimate-3-phosphate synthase isoforms in elicitor-treated, cultured maize cells. Funct. Plant Biol. 29: 1483-1490 (2002).

Forlani G, Giberti S, Berlicki L, Petrollino D, Kafarski P. Plant P5C reductase as a new target for aminomethylenebisphosphonates. J. Agric. Food Chem. 55: 4340-4347 (2007).

Forlani G, Mangiagalli A, Pinter C, Nielsen E. Expression of delta(1)-pyrroline-5-carboxylate dehydrogenase and proline/arginine homeostasis in Solanum tuberosum. Physiol. Plant. 110: 22-27 (2000).

Forlani G, Occhipinti A, Berlicki L, Dziedziola G, Wieczorek A, Kafarski P. Tailoring the structure of aminobisphosphonates to target plant P5C reductase. J. Agric. Food Chem. 56: 3193-3199 (2008).

Forment J, Gadea J, Huerta L, Abizanda L, Agusti J, Alamar S, Alos E, Andres F, Arribas R, Beltran JP, Berbel A, Blazquez MA, Brumos J, Canas LA, Cercos M, et al. Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies. Plant Mol. Biol. 57: 375-391 (2005).

Fornale S, Sonbol FM, Maes T, Capellades M, Puigdomenech P, Rigau J, Caparros-Ruiz D. Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factors. Plant Mol. Biol. 62: 809-823 (2006).

Fornara F, Gregis V, Pelucchi N, Colombo L, Kater M. The rice StMADS11-like genes OsMADS22 and OsMADS47 cause floral reversions in Arabidopsis without complementing the svp and agl24 mutants. J. Exp. Bot. 59: 2181-2190 (2008).

Fornara F, Parenicova L, Falasca G, Pelucchi N, Masiero S, Ciannamea S, Lopez-Dee Z, Altamura MM, Colombo L, Kater MM. Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes. Plant Physiol. 135: 2207-2219 (2004).

Forner J, Holzle A, Jonietz C, Thuss S, Schwarzlander M, Weber B, Meyer RC, Binder S. Mitochondrial mRNA polymorphisms in different Arabidopsis thaliana accessions. Plant Physiol. 148: 1106-1116 (2008).

Forreiter C, Kirschner M, Nover L. Stable transformation of an Arabidopsis cell suspension culture with firefly luciferase providing a cellular system for analysis of chaperone activity in vivo. Plant Cell 9: 2171-2181 (1997).

Forsbach A, Schubert D, Lechtenberg B, Gils M, Schmidt R. A comprehensive characterization of single-copy T-DNA insertions in the Arabidopsis thaliana genome. Plant Mol. Biol. 52: 161-176 (2003).

Forsberg J, Strom J, Kieselbach T, Larsson H, Alexciev K, Engstrom A, Akerlund HE. Protease activities in the chloroplast capable of cleaving an LHCII N-terminal peptide. Physiol. Plant. 123: 21-29 (2005).

Fortin MC, Pierce FJ, Poff KL. The pattern of secondary root formation in curving roots of Arabidopsis thaliana (L.) Heynh. Plant Cell Environ. 12: 337-339 (1989).

Fortunati A, Piconese S, Tassone P, Ferrari S, Migliaccio F. A new mutant of Arabidopsis disturbed in its roots, right-handed slanting, and gravitropism defines a gene that encodes a heat-shock factor. J. Exp. Bot. 59: 1363-1374 (2008).

Forward BS, Osusky M, Misra S. The Douglas-fir BiP promoter is functional in Arabidopsis and responds to wounding. Planta 215: 569-576 (2002).

Foster R, Chua NH. An Arabidopsis mutant with deregulated ABA gene expression: implications for negative regulator function. Plant J. 17: 363-372 (1999).

Foster R, Mattsson O, Mundy J. Plants flex their skeletons. Trends Plant Sci. 8: 202-204 (2003).

Fotopoulos V, Gilbert MJ, Pittman JK, Marvier AC, Buchanan AJ, Sauer N, Hall JL, Williams LE. The monosaccharide transporter gene, AtSTP4, and the cell-wall invertase, At{beta}fruct1, are induced in Arabidopsis during infection with the fungal biotroph Erysiphe cichoracearum. Plant Physiol. 132: 821-829 (2003).

Foucher F, Morin J, Courtiade J, Cadioux S, Ellis N, Banfield MJ, Rameau C. DETERMINATE and LATE FLOWERING are two TERMINAL FLOWER1/CENTRORADIALIS homologs that control two distinct phases of flowering initiation and development in pea. Plant Cell 15: 2742-2754 (2003).

Fouquet R, Leon C, Ollat N, Barrieu F. Identification of grapevine aquaporins and expression analysis in developing berries. Plant Cell Rep. 27: 1541-1550 (2008).

Fourcroy P, Vansuyt G, Kushnir S, Inze D, Briat JF. Iron-regulated expression of a cytosolic ascorbate peroxidase encoded by the APX1 gene in Arabidopsis seedlings. Plant Physiol. 134: 605-613 (2004).

Fourgoux-Nicol A, Drouaud J, Haouazine N, Pelletier G, Guerche P. Isolation of rapeseed genes expressed early and specifically during development of the male gametophyte. Plant Mol. Biol. 40: 857-872 (1999).

Fourrier N, Bedard J, Lopez-Juez E, Barbrook A, Bowyer J, Jarvis P, Warren G, Thorlby G. A role for SENSITIVE TO FREEZING2 in protecting chloroplasts against freeze induced damage in Arabidopsis. Plant J. 55: 734-745 (2008).

Fowler SG, Cook D, Thomashow MF. Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol. 137: 961-968 (2005).

Fowler TJ, Bernhardt C, Tierney ML. Characterization and expression of four proline-rich cell wall protein genes in Arabidopsis encoding two distinct subsets of multiple domain proteins. Plant Physiol. 121: 1081-1092 (1999).

Foyer CH, Noctor G. Oxidant and antioxidant signalling in plants: a re-evaluation of the concept of oxidative stress in a physiological context. Plant Cell Environ. 28: 1056-1071 (2005).

Frachisse JM, Colcombet J, Guern J, Barbier-Brygoo H. Characterization of a nitrate-permeable channel able to mediate sustained anion efflux in hypocotyl cells from Arabidopsis thaliana. Plant J. 21: 361-371 (2000).

Frachisse JM, Thomine S, Colcombet J, Guern J, Barbier-Brygoo H. Sulfate is both a substrate and an activator of the voltage-dependent anion channel of Arabidopsis hypocotyl cells. Plant Physiol. 121: 253-262 (1999).

Fragoso S, Espíndola L, Paez-Valencia J, Gamboa A, Camacho Y, Martínez-Barajas E, Coello P. SnRK1 isoforms AKIN10 and AKIN11 are differentially regulated in Arabidopsis plants under phosphate starvation. Plant Physiol. 149: 1906-1916 (2009).

Franca SC, Roberto PG, Marins MA, Puga RD, Rodrigues A, Pereira JO. Biosynthesis of secondary metabolites in sugarcane. Genet. Mol. Biol. 24: 243-250 (2001).

Franceschetti M, Hanfrey C, Scaramagli S, Torrigiani P, Bagni N, Burtin D, Michael AJ. Characterization of monocot and dicot plant S-adenosyl-L-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames. Biochem. J. 353: 403-409 (2001).

Franceschi VR, Tarlyn NM. L-Ascorbic acid is accumulated in source leaf phloem and transported to sink tissues in plants. Plant Physiol. 130: 649-656 (2002).

Francis KE, Lam SY, Copenhaver GP. Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene. Plant Physiol. 142: 1004-1013 (2006).

Francis KE, Spiker S. Identification of Arabidopsis thaliana transformants without selection reveals a high occurrence of silenced T-DNA integrations. Plant J. 41: 464-477 (2005).

Franck F, Sperling U, Frick G, Pochert B, van Cleve B, Apel K, Armstrong GA. Regulation of etioplast pigment-protein complexes, inner membrane architecture, and protochlorophyllide a chemical heterogeneity by light-dependent NADPH:protochlorophyllide oxidoreductases A and B. Plant Physiol. 124: 1678-1696 (2000).

Franco OL, Melo FR. Osmoprotectants - A plant strategy in response to osmotic stress. Russ. J. Plant Physiol. 47: 137-144 (2000).

Franco-Zorrilla JM, Cubas P, Jarillo JA, Fernandez-Calvin B, Salinas J, Martinez-Zapater JM. AtREM1, a member of a new family of B3 domain-containing genes, is preferentially expressed in reproductive meristems. Plant Physiol. 128: 418-427 (2002).

Franco-Zorrilla JM, Martin AC, Leyva A, Paz-Ares J. Interaction between phosphate-starvation, sugar, and cytokinin signaling in Arabidopsis and the roles of cytokinin receptors CRE1/AHK4 and AHK3. Plant Physiol. 138: 847-857 (2005).

Franco-Zorrilla JM, Martin AC, Solano R, Rubio V, Leyva A, Paz-Ares J. Mutations at CRE1 impair cytokinin-induced repression of phosphate starvation responses in Arabidopsis. Plant J. 32: 353-360 (2002).

Francois IE, De Bolle MF, Dwyer G, Goderis IJ, Woutors PF, Verhaert PD, Proost P, Schaaper WM, Cammue BP, Broekaert WF. Transgenic expression in Arabidopsis of a polyprotein construct leading to production of two different antimicrobial proteins. Plant Physiol. 128: 1346-1358 (2002).

Frangne N, Eggmann T, Koblischke C, Weissenbock G, Martinoia E, Klein M. Flavone glucoside uptake into barley mesophyll and Arabidopsis cell culture vacuoles. Energization occurs by H(+)-antiport and ATP-binding cassette-type mechanisms. Plant Physiol. 128: 726-733 (2002).

Frank J, Kaulfurst-Soboll H, Rips S, Koiwa H, von Schaewen A. Comparative analyses of Arabidopsis complex glycan1 mutants and genetic interaction with staurosporin and temperature sensitive3a. Plant Physiol. 148: 1354-1367 (2008).

Frank M, Rupp HM, Prinsen E, Motyka V, Van Onckelen H, Schmulling T. Hormone autotrophic growth and differentiation identifies mutant lines of Arabidopsis with altered cytokinin and auxin content or signaling. Plant Physiol. 122: 721-730 (2000).

Frank W, Ratnadewi D, Reski R. Physcomitrella patens is highly tolerant against drought, salt and osmotic stress. Planta 220: 384-394 (2005).

Frankard V, Vauterin M, Jacobs M. Molecular characterization of an Arabidopsis thaliana cDNA coding for a monofunctional aspartate kinase. Plant Mol. Biol. 34: 233-242 (1997).

Franke R, Hemm MR, Denault JW, Ruegger MO, Humphreys JM, Chapple C. Changes in secondary metabolism and deposition of an unusual lignin in the ref8 mutant of Arabidopsis. Plant J. 30: 47-59 (2002).

Franke R, Hofer R, Briesen I, Emsermann M, Efremova N, Yephremov A, Schreiber L. The DAISY gene from Arabidopsis encodes a fatty acid elongase condensing enzyme involved in the biosynthesis of aliphatic suberin in roots and the chalaza micropyle region of seeds. Plant J. 57: 80-95 (2009).

Franke R, Humphreys JM, Hemm MR, Denault JW, Ruegger MO, Cusumano JC, Chapple C. The Arabidopsis REF8 gene encodes the 3-hydroxylase of phenylpropanoid metabolism. Plant J. 30: 33-45 (2002).

Franke R, McMichael CM, Meyer K, Shirley AM, Cusumano JC, Chapple C. Modified lignin in tobacco and poplar plants over-expressing the Arabidopsis gene encoding ferulate 5-hydroxylase. Plant J. 22: 223-234 (2000).

Franke R, Schreiber L. Suberin - a biopolyester forming apoplastic plant interfaces. Curr. Opin. Plant Biol. 10: 252-259 (2007).

Franklin KA, Allen T, Whitelam GC. Phytochrome A is an irradiance-dependent red light sensor. Plant J. 50: 108-117 (2007).

Franklin KA, Davis SJ, Stoddart WM, Vierstra RD, Whitelam GC. Mutant analyses define multiple roles for phytochrome C in Arabidopsis photomorphogenesis. Plant Cell 15: 1981-1989 (2003).

Franklin KA, Praekelt U, Stoddart WM, Billingham OE, Halliday KJ, Whitelam GC. Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis. Plant Physiol. 131: 1340-1346 (2003).

Franklin KA, Whitelam GC. Light signals, phytochromes and cross-talk with other environmental cues. J. Exp. Bot. 55: 271-276 (2004).

Franks RG, Liu Z, Fischer RL. SEUSS and LEUNIG regulate cell proliferation, vascular development and organ polarity in Arabidopsis petals. Planta 224: 801-811 (2006).

Fraser CM, Rider LW, Chapple C. An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family. Plant Physiol. 138: 1136-1148 (2005).

Fraser CM, Thompson MG, Shirley AM, Ralph J, Schoenherr JA, Sinlapadech T, Hall MC, Chapple C. Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities. Plant Physiol. 144: 1986-1999 (2007).

Fraser PD, Pinto ME, Holloway DE, Bramley PM. Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids. Plant J. 24: 551-558 (2000).

Fraser TC, Qi B, Elhussein S, Chatrattanakunchai S, Stobart AK, Lazarus CM. Expression of the isochrysis c18-delta9 polyunsaturated fatty acid specific elongase component alters Arabidopsis glycerolipid profiles. Plant Physiol. 135: 859-866 (2004).

Frazzon AP, Ramirez MV, Warek U, Balk J, Frazzon J, Dean DR, Winkel BS. Functional analysis of Arabidopsis genes involved in mitochondrial iron-sulfur cluster assembly. Plant Mol. Biol. 64: 225-240 (2007).

Freeling M, Rapaka L, Lyons E, Pedersen B, Thomas BC. G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis. Plant Cell 19: 1441-1457 (2007).

Freeling M, Subramaniam S. Conserved noncoding sequences (CNSs) in higher plants. Curr. Opin. Plant Biol. 12: 126-132 (2009).

Freeman JL, Garcia D, Kim D, Hopf A, Salt DE. Constitutively elevated salicylic acid signals glutathione-mediated nickel tolerance in Thlaspi nickel hyperaccumulators. Plant Physiol. 137: 1082-1091 (2005).

Freeman JL, Persans MW, Nieman K, Albrecht C, Peer W, Pickering IJ, Salt DE. Increased glutathione biosynthesis plays a role in nickel tolerance in thlaspi nickel hyperaccumulators. Plant Cell 16: 2176-2191 (2004).

Freixes S, Thibaud MC, Tardieu F, Muller B. Root elongation and branching is related to local hexose concentration in Arabidopsis thaliana seedlings. Plant Cell Environ. 25: 1357-1366 (2002).

Frelet-Barrand A, Kolukisaoglu HU, Plaza S, Ruffer M, Azevedo L, Hortensteiner S, Marinova K, Weder B, Schulz B, Klein M. Comparative mutant analysis of Arabidopsis ABCC-type ABC transporters: AtMRP2 contributes to detoxification, vacuolar organic anion transport and chlorophyll degradation. Plant Cell Physiol. 49: 557-569 (2008).

Freshour G, Bonin CP, Reiter WD, Albersheim P, Darvill AG, Hahn MG. Distribution of fucose-containing xyloglucans in cell walls of the mur1 mutant of Arabidopsis. Plant Physiol. 131: 1602-1612 (2003).

Frey A, Boutin JP, Sotta B, Mercier R, Marion-Poll A. Regulation of carotenoid and ABA accumulation during the development and germination of Nicotiana plumbaginifolia seeds. Planta 224: 622-632 (2006).

Frick G, Su Q, Apel K, Armstrong GA. An Arabidopsis porB porC double mutant lacking light-dependent NADPH:protochlorophyllide oxidoreductases B and C is highly chlorophyll-deficient and developmentally arrested. Plant J. 35: 141-153 (2003).

Fridborg I, Kuusk S, Moritz T, Sundberg E. The Arabidopsis dwarf mutant shi exhibits reduced gibberellin responses conferred by overexpression of a new putative zinc finger protein. Plant Cell 11: 1019-1032 (1999).

Fridborg I, Kuusk S, Robertson M, Sundberg E. The Arabidopsis protein SHI represses gibberellin responses in Arabidopsis and barley. Plant Physiol. 127: 937-948 (2001).

Fridman E, Zamir D. Functional divergence of a syntenic invertase gene family in tomato, potato, and Arabidopsis. Plant Physiol. 131: 603-609 (2003).

Friedrichsen D, Chory J. Steroid signaling in plants: from the cell surface to the nucleus. Bioessays 23: 1028-1036 (2001).

Friedrichsen DM, Joazeiro CA, Li J, Hunter T, Chory J. Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine Kinase. Plant Physiol. 123: 1247-1256 (2000).

Friesner J, Britt AB. Ku80- and DNA ligase IV-deficient plants are sensitive to ionizing radiation and defective in T-DNA integration. Plant J. 34: 427-440 (2003).

Frigerio M, Alabadi D, Perez-Gomez J, Garcia-Carcel L, Phillips AL, Hedden P, Blazquez MA. Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis. Plant Physiol. 142: 553-563 (2006).

Friml J, Benkova E, Mayer U, Palme K, Muster G. Automated whole mount localisation techniques for plant seedlings. Plant J. 34: 115-124 (2003).

Friso G, Giacomelli L, Ytterberg AJ, Peltier JB, Rudella A, Sun Q, Wijk KJ. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell 16: 478-499 (2004).

Frison M, Parrou JL, Guillaumot D, Masquelier D, Francois J, Chaumont F, Batoko H. The Arabidopsis thaliana trehalase is a plasma membrane-bound enzyme with extracellular activity. FEBS Lett. 581: 4010-4016 (2007).

Fritz-Laylin LK, Krishnamurthy N, Tor M, Sjolander KV, Jones JD. Phylogenomic analysis of the receptor-like proteins of rice and Arabidopsis. Plant Physiol. 138: 611-623 (2005).

Fritze IM, Linden L, Freigang J, Auerbach G, Huber R, Steinbacher S. The crystal structures of Zea mays and Arabidopsis 4-hydroxyphenylpyruvate dioxygenase. Plant Physiol. 134: 1388-1400 (2004).

Fritzius T, Aeschbacher R, Wiemken A, Wingler A. Induction of ApL3 expression by trehalose complements the starch-deficient Arabidopsis mutant adg2-1 lacking ApL1, the large subunit of ADP-glucose pyrophosphorylase. Plant Physiol. 126: 883-889 (2001).

Froman BE, Edwards PC, Bursch AG, Dehesh K. ACX3, a novel medium-chain acyl-coenzyme A oxidase from Arabidopsis. Plant Physiol. 123: 733-742 (2000).

Frommer WB, Hummel S, Rentsch D. Cloning of an Arabidopsis histidine transporting protein related to nitrate and peptide transporters. FEBS Lett. 347: 185-189 (1994).

Frommer WB, Kwart M, Hirner B, Fischer WN, Hummel S, Ninnemann O. Transporters for nitrogenous compounds in plants. Plant Mol. Biol. 26: 1651-1670 (1994).

Frugoli JA, Zhong HH, Nuccio ML, McCourt P, McPeek MA, Thomas TL, McClung CR. Catalase is encoded by a multigene family in Arabidopsis thaliana (L.) Heynh. Plant Physiol. 112: 327-336 (1996).

Fry RC, Habashi J, Okamoto H, Deng XW. Characterization of a strong dominant phytochrome a mutation unique to phytochrome A signal propagation. Plant Physiol. 130: 457-465 (2002).

Frye CA, Innes RW. An Arabidopsis mutant with enhanced resistance to powdery mildew. Plant Cell 10: 947-956 (1998).

Fryer MJ, Ball L, Oxborough K, Karpinski S, Mullineaux PM, Baker NR. Control of Ascorbate Peroxidase 2 expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organisation of Arabidopsis leaves. Plant J. 33: 691-705 (2003).

Fryer MJ, Oxborough K, Mullineaux PM, Baker NR. Imaging of photo-oxidative stress responses in leaves. J. Exp. Bot. 53: 1249-1254 (2002).

Fu H, Doelling JH, Rubin DM, Vierstra RD. Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome. Plant J. 18: 529-539 (1999).

Fu HH, Luan S. AtKuP1: a dual-affinity K+ transporter from Arabidopsis. Plant Cell 10: 63-73 (1998).

Fu S, Rogowsky P, Nover L, Scanlon MJ. The maize heat shock factor-binding protein paralogs EMP2 and HSBP2 interact non-redundantly with specific heat shock factors. Planta 224: 42-52 (2006).

Fu X, Richards DE, Fleck B, Xie D, Burton N, Harberd NP. The Arabidopsis mutant sleepy1gar2-1 protein promotes plant growth by increasing the affinity of the SCFSLY1 E3 ubiquitin ligase for DELLA protein substrates. Plant Cell 16: 1406-1418 (2004).

Fuchs I, Stolzle S, Ivashikina N, Hedrich R. Rice K+ uptake channel OsAKT1 is sensitive to salt stress. Planta 221: 212-221 (2005).

Fuerst RA, Soni R, Murray JA, Lindsey K. Modulation of cyclin transcript levels in cultured cells of Arabidopsis thaliana. Plant Physiol. 112: 1023-1033 (1996).

Fuglsang AT, Borch J, Bych K, Jahn TP, Roepstorff P, Palmgren MG. The binding site for regulatory 14-3-3 protein in plant plasma membrane H+- ATPase: involvement of a region promoting phosphorylation-independent interaction in addition to the phosphorylation-dependent C-terminal end. J. Biol. Chem. 278: 42266-42272 (2003).

Fuglsang AT, Guo Y, Cuin TA, Qiu Q, Song C, Kristiansen KA, Bych K, Schulz A, Shabala S, Schumaker KS, Palmgren MG, Zhu JK. Arabidopsis protein kinase PKS5 inhibits the plasma membrane H+ -ATPase by preventing interaction with 14-3-3 protein. Plant Cell 19: 1617-1634 (2007).

Fuhrmann E, Gathmann S, Rupprecht E, Golecki J, Schneider D. Thylakoid membrane reduction affects the photosystem stoichiometry in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol. 149: 735-744 (2009).

Fuji K, Shimada T, Takahashi H, Tamura K, Koumoto Y, Utsumi S, Nishizawa K, Maruyama N, Hara-Nishimura I. Arabidopsis vacuolar sorting mutants (green fluorescent seed) can be identified efficiently by secretion of vacuole-targeted green fluorescent protein in their seeds. Plant Cell 19: 597-609 (2007).

Fujibe T, Saji H, Arakawa K, Yabe N, Takeuchi Y, Yamamoto KT. A methyl viologen-resistant mutant of Arabidopsis, which is allelic to ozone-sensitive rcd1, is tolerant to supplemental ultraviolet-B irradiation. Plant Physiol. 134: 275-285 (2004).

Fujii H, Verslues PE, Zhu JK. Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis. Plant Cell 19: 485-494 (2007).

Fujii S, Yamada M, Toriyama K. Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11. Plant Cell Physiol. 50: 828-837 (2009).

Fujikawa Y, Kato N. Split luciferase complementation assay to study protein-protein interactions in Arabidopsis protoplasts. Plant J. 52: 185-195 (2007).

Fujiki Y, Ito M, Nishida I, Watanabe A. Multiple signaling pathways in gene expression during sugar starvation. Pharmacological analysis of din gene expression in suspension-cultured cells of Arabidopsis. Plant Physiol. 124: 1139-1148 (2000).

Fujiki Y, Yoshimoto K, Ohsumi Y. An Arabidopsis homolog of yeast ATG6/VPS30 is essential for pollen germination. Plant Physiol. 143: 1132-1139 (2007).

Fujikura U, Horiguchi G, Ponce MR, Micol JL, Tsukaya H. Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana. Plant J. 59: 499-508 (2009).

Fujimori K, Ohta D. An Arabidopsis cDNA encoding a bifunctional glutamine amidotransferase/cyclase suppresses the histidine auxotrophy of a Saccharomyces cerevisiae his7 mutant. FEBS Lett. 428: 229-234 (1998).

Fujimori K, Ohta D. Isolation and characterization of a histidine biosynthetic gene in Arabidopsis encoding a polypeptide with two separate domains for phosphoribosyl-ATP pyrophosphohydrolase and phosphoribosyl-AMP cyclohydrolase. Plant Physiol. 118: 275-283 (1998).

Fujimori K, Ohta D. Heavy metal induction of Arabidopsis serine decarboxylase gene expression. Biosci. Biotechnol. Biochem. 67: 896-898 (2003).

Fujimori K, Tada S, Kanai S, Ohta D. Molecular cloning and characterization of the gene encoding N'-[(5'-phosphoribosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (BBM II) isomerase from Arabidopsis thaliana. Mol. Gen. Genet. 259: 216-223 (1998).

Fujimoto M, Arimura S, Mano S, Kondo M, Saito C, Ueda T, Nakazono M, Nakano A, Nishimura M, Tsutsumi N. Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission. Plant J. 58: 388-400 (2009).

Fujimoto M, Arimura SI, Nakazono M, Tsutsumi N. Arabidopsis dynamin-related protein DRP2B is co-localized with DRP1A on the leading edge of the forming cell plate. Plant Cell Rep. 27: 1581-1586 (2008).

Fujimoto R, Sasaki T, Inoue H, Nishio T. Hypomethylation and transcriptional reactivation of retrotransposon-like sequences in ddm1 transgenic plants of Brassica rapa. Plant Mol. Biol. 66: 463-473 (2008).

Fujimoto S, Yonemura M, Matsunaga S, Nakagawa T, Uchiyama S, Fukui K. Characterization and dynamic analysis of Arabidopsis condensin subunits, AtCAP-H and AtCAP-H2. Planta 222: 293-300 (2005).

Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell 12: 393-404 (2000).

Fujioka S, Takatsuto S, Yoshida S. An early C-22 oxidation branch in the brassinosteroid biosynthetic pathway. Plant Physiol. 130: 930-939 (2002).

Fujioka Y, Utsumi M, Ohba Y, Watanabe Y. Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis. Plant Cell Physiol. 48: 1243-1253 (2007).

Fujisawa M, Watanabe M, Choi SK, Teramoto M, Ohyama K, Misawa N. Enrichment of carotenoids in flaxseed (Linum usitatissimum) by metabolic engineering with introduction of bacterial phytoene synthase gene crtB. J. Biosci. Bioeng. 105: 636-641 (2008).

Fujita M, Fujita Y, Maruyama K, Seki M, Hiratsu K, Ohme-Takagi M, Tran LS, Yamaguchi-Shinozaki K, Shinozaki K. A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J. 39: 863-876 (2004).

Fujita S, Ohnishi T, Watanabe B, Yokota T, Takatsuto S, Fujioka S, Yoshida S, Sakata K, Mizutani M. Arabidopsis CYP90B1 catalyses the early C-22 hydroxylation of C27, C28 and C29 sterols. Plant J. 45: 765-774 (2006).

Fujita Y, Fujita M, Satoh R, Maruyama K, Parvez MM, Seki M, Hiratsu K, Ohme-Takagi M, Shinozaki K, Yamaguchi-Shinozaki K. AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell 17: 3470-3488 (2005).

Fujitani Y, Horiuchi T, Ito K, Sugimoto M. Serine racemases from barley, Hordeum vulgare L., and other plant species represent a distinct eukaryotic group: gene cloning and recombinant protein characterization. Phytochemistry 68: 1530-1536 (2007).

Fujitani Y, Nakajima N, Ishihara K, Oikawa T, Ito K, Sugimoto M. Molecular and biochemical characterization of a serine racemase from Arabidopsis thaliana. Phytochemistry 67: 668-674 (2006).

Fujiwara MT, Hashimoto H, Kazama Y, Abe T, Yoshida S, Sato N, Itoh RD. The assembly of the FtsZ ring at the mid-chloroplast division site depends on a balance between the activities of AtMinE1 and ARC11/AtMinD1. Plant Cell Physiol. 49: 345-361 (2008).

Fujiwara MT, Sekine K, Yamamoto YY, Abe T, Sato N, Itoh RD. Live imaging of chloroplast FtsZ1 filaments, rings, spirals, and motile dot structures in the AtMinE1 mutant and overexpressor of Arabidopsis thaliana. Plant Cell Physiol. 50: 1116-1126 (2009).

Fujiwara S, Oda A, Yoshida R, Niinuma K, Miyata K, Tomozoe Y, Tajima T, Nakagawa M, Hayashi K, Coupland G, Mizoguchi T. Circadian clock proteins LHY and CCA1 regulate SVP protein accumulation to control flowering in Arabidopsis. Plant Cell 20: 2960-2971 (2008).

Fukaki H, Fujisawa H, Tasaka M. Gravitropic response of inflorescence stems in Arabidopsis thaliana. Plant Physiol. 110: 933-943 (1996).

Fukaki H, Fujisawa H, Tasaka M. SGR1, SGR2, SGR3: novel genetic loci involved in shoot gravitropism in Arabidopsis thaliana. Plant Physiol. 110: 945-955 (1996).

Fukaki H, Nakao Y, Okushima Y, Theologis A, Tasaka M. Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis. Plant J. 44: 382-395 (2005).

Fukaki H, Taniguchi N, Tasaka M. PICKLE is required for SOLITARY-ROOT/IAA14-mediated repression of ARF7 and ARF19 activity during Arabidopsis lateral root initiation. Plant J. 48: 380-389 (2006).

Fukaki H, Tasaka M. Hormone interactions during lateral root formation. Plant Mol. Biol. 69: 437-449 (2009).

Fukuchi-Mizutani M, Mizutani M, Tanaka Y, Kusumi T, Ohta D. Microsomal electron transfer in higher plants: cloning and heterologous expression of NADH-cytochrome b5 reductase from Arabidopsis. Plant Physiol. 119: 353-362 (1999).

Fukusaki E, Kobayashi A. Plant metabolomics: potential for practical operation. J. Biosci. Bioeng. 100: 347-354 (2005).

Fukuta N, Fujioka S, Takatsuto S, Yoshida S, Fukuta Y, Nakayama M. 'Rinrei', a brassinosteroid-deficient dwarf mutant of faba bean (Vicia faba). Physiol. Plant. 121: 506-512 (2004).

Fulda M, Schnurr J, Abbadi A, Heinz E, Browse J. Peroxisomal acyl-CoA synthetase activity is essential for seedling development in Arabidopsis thaliana. Plant Cell 16: 394-405 (2004).

Fulda M, Shockey J, Werber M, Wolter FP, Heinz E. Two long-chain acyl-CoA synthetases from Arabidopsis thaliana involved in peroxisomal fatty acid beta-oxidation. Plant J. 32: 93-103 (2002).

Fulton LM, Cobbett CS. Two alpha-L-arabinofuranosidase genes in Arabidopsis thaliana are differentially expressed during vegetative growth and flower development. J. Exp. Bot. 54: 2467-2477 (2003).

Fulton TM, Van Der Hoeven R, Eannetta NT, Tanksley SD. Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell 14: 1457-1467 (2002).

Funck D, Stadelhofer B, Koch W. Ornithine-delta-aminotransferase is essential for arginine catabolism but not for proline biosynthesis. BMC Plant Biol. 8: 40 (2008).

Funes S, Gerdes L, Inaba M, Soll J, Herrmann JM. The Arabidopsis thaliana chloroplast inner envelope protein ARTEMIS is a functional member of the Alb3/Oxa1/YidC family of proteins. FEBS Lett. 569: 89-93 (2004).

Funk V, Kositsup B, Zhao C, Beers EP. The Arabidopsis xylem peptidase XCP1 is a tracheary element vacuolar protein that may be a papain ortholog. Plant Physiol. 128: 84-94 (2002).

Furihata T, Maruyama K, Fujita Y, Umezawa T, Yoshida R, Shinozaki K, Yamaguchi-Shinozaki K. Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1. Proc. Natl. Acad. Sci. U.S.A. 103: 1988-1993 (2006).

Furini A, Parcy F, Salamini F, Bartels D. Differential regulation of two ABA-inducible genes from Craterostigma plantagineum in transgenic Arabidopsis plants. Plant Mol. Biol. 30: 343-349 (1996).

Furner I, Ellis L, Bakht S, Mirza B, Sheikh M. CAUT lines: a novel resource for studies of cell autonomy in Arabidopsis. Plant J. 53: 645-660 (2008).

Fusaro AF, Bocca SN, Ramos RL, Barroco RM, Magioli C, Jorge VC, Coutinho TC, Rangel-Lima CM, De Rycke R, Inze D, Engler G, Sachetto-Martins G. AtGRP2, a cold-induced nucleo-cytoplasmic RNA-binding protein, has a role in flower and seed development. Planta 225: 1339-1351 (2007).

Gable K, Garton S, Napier JA, Dunn TM. Functional characterization of the Arabidopsis thaliana orthologue of Tsc13p, the enoyl reductase of the yeast microsomal fatty acid elongating system. J. Exp. Bot. 55: 543-545 (2004).

Gabrielson KM, Cancel JD, Morua LF, Larsen PB. Identification of dominant mutations that confer increased aluminium tolerance through mutagenesis of the Al-sensitive Arabidopsis mutant, als3-1. J. Exp. Bot. 57: 943-951 (2006).

Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P. Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Mol. Biol. 58: 229-245 (2005).

Gadjev I, Vanderauwera S, Gechev TS, Laloi C, Minkov IN, Shulaev V, Apel K, Inze D, Mittler R, Van Breusegem F. Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141: 436-445 (2006).

Gagete AP, Riera M, Franco L, Rodrigo MI. Functional analysis of the isoforms of an ABI3-like factor of Pisum sativum generated by alternative splicing. J. Exp. Bot. 60: 1703-1714 (2009).

Gago GM, Almoguera C, Jordano J, Gonzalez DH, Chan RL. Hahb-4, a homeobox-leucine zipper gene potentially involved in abscisic acid-dependent responses to water stress in sunflower. Plant Cell Environ. 25: 633-640 (2002).

Gahoonia TS, Nielsen NE. Phosphorus (P) uptake and growth of a root hairless barley mutant (bald root barley, brb) and wild type in low- and high-P soils. Plant Cell Environ. 26: 1759-1766 (2003).

Gaiser JC, Robinson-Beers K, Gasser CS. The Arabidopsis SUPERMAN gene mediates asymmetric growth of the outer integument of ovules. Plant Cell 7: 333-345 (1995).

Gaj MD, Zhang S, Harada JJ, Lemaux PG. Leafy cotyledon genes are essential for induction of somatic embryogenesis of Arabidopsis. Planta 222: 977-988 (2005).

Gakiere B, Denis L, Droux M, Job D. Over-expression of cystathionine gamma-synthase in Arabidopsis thaliana leads to increased levels of methionine and S- methylmethionine. Plant Physiol. Biochem. 40: 119-126 (2002).

Gakiere B, Ravanel S, Droux M, Douce R, Job D. Mechanisms to account for maintenance of the soluble methionine pool in transgenic Arabidopsis plants expressing antisense cystathionine gamma-synthase cDNA. C. R. Acad. Sci. III 323: 841-851 (2000).

Galaud JP, Laval V, Carriere M, Barre A, Canut H, Rouge P, Pont-Lezica R. Osmotic stress activated expression of an Arabidopsis plasma membrane-associated protein: sequence and predicted secondary structure. Biochim. Biophys. Acta 1341: 79-86 (1997).

Galbiati M, Simoni L, Pavesi G, Cominelli E, Francia P, Vavasseur A, Nelson T, Bevan M, Tonelli C. Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells. Plant J. 53: 750-762 (2008).

Galbraith DW, Birnbaum K. Global studies of cell type-specific gene expression in plants. Annu. Rev. Plant Biol. 57: 451-475 (2006).

Galichet A, Gruissem W. Developmentally controlled farnesylation modulates AtNAP1;1 function in cell proliferation and cell expansion during Arabidopsis leaf development. Plant Physiol. 142: 1412-1426 (2006).

Galili G, Tang GL, Zhu XH, Karchi H, Miron D, Gakiere B, Stepansky A. Molecular genetic dissection and potential manipulation of lysine metabolism in seeds. J. Plant Physiol. 158: 515-520 (2001).

Gallagher KL, Benfey PN. Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement. Plant J. 57: 785-797 (2009).

Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D. Proteomic analysis of Arabidopsis seed germination and priming. Plant Physiol. 126: 835-848 (2001).

Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D. Proteomics of Arabidopsis seed germination. A comparative study of wild-type and gibberellin-deficient seeds. Plant Physiol. 129: 823-837 (2002).

Gallavotti A, Yang Y, Schmidt RJ, Jackson D. The relationship between auxin transport and maize branching. Plant Physiol. 147: 1913-1923 (2008).

Gallego ME, Bleuyard JY, Daoudal-Cotterell S, Jallut N, White CI. Ku80 plays a role in non-homologous recombination but is not required for T-DNA integration in Arabidopsis. Plant J. 35: 557-565 (2003).

Gallego ME, Sirand-Pugnet P, White CI. Positive-negative selection and T-DNA stability in Arabidopsis transformation. Plant Mol. Biol. 39: 83-93 (1999).

Galletti R, Denoux C, Gambetta S, Dewdney J, Ausubel FM, Lorenzo GD, Ferrari S. The AtrbohD-mediated oxidative burst elicited by oligogalacturonides in Arabidopsis thaliana is dispensable for the activation of defense responses effective against Botrytis cinerea. Plant Physiol. 148: 1695-1706 (2008).

Gallois JL, Guyon-Debast A, Lecureuil A, Vezon D, Carpentier V, Bonhomme S, Guerche P. The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy. Plant Cell 21: 442-459 (2009).

Galuszka P, Frebort I, Sebela M, Sauer P, Jacobsen S, Pec P. Cytokinin oxidase or dehydrogenase? Mechanism of cytokinin degradation in cereals. Eur. J. Biochem. 268: 450-461 (2001).

Galuszka P, Frebortova J, Werner T, Yamada M, Strnad M, Schmulling T, Frebort I. Cytokinin oxidase/dehydrogenase genes in barley and wheat: cloning and heterologous expression. Eur. J. Biochem. 271: 3990-4002 (2004).

Galuszka P, Frebortova J, Werner T, Yamada M, Strnad M, Schmulling T, Frebort I. Cytokinin oxidase/dehydrogenase genes in barley and wheat: cloning and heterologous expression. Eur. J. Biochem. 271: 3990-4002 (2004).

Galway ME, Heckman JW Jr, Schiefelbein JW. Growth and ultrastructure of Arabidopsis root hairs: the rhd3 mutation alters vacuole enlargement and tip growth. Planta 201: 209-218 (1997).

Gamble RL, Coonfield ML, Schaller GE. Histidine kinase activity of the ETR1 ethylene receptor from Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 95: 7825-7829 (1998).

Gamble RL, Qu X, Schaller GE. Mutational analysis of the ethylene receptor ETR1. Role of the histidine kinase domain in dominant ethylene insensitivity. Plant Physiol. 128: 1428-1438 (2002).

Gan Y, Filleur S, Rahman A, Gotensparre S, Forde BG. Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana. Planta 222: 730-742 (2005).

Gan Y, Kumimoto R, Liu C, Ratcliffe O, Yu H, Broun P. GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis. Plant Cell 18: 1383-1395 (2006).

Ganal MW, Altmann T, Roder MS. SNP identification in crop plants. Curr. Opin. Plant Biol. 12: 211-217 (2009).

Gandia-Herrero F, Lorenz A, Larson T, Graham IA, Bowles DJ, Rylott EL, Bruce NC. Detoxification of the explosive 2,4,6-trinitrotoluene in Arabidopsis- discovery of bifunctional O- and C-glucosyltransferases. Plant J. 56: 963-974 (2008).

Ganeteg U, Klimmek F, Jansson S. Lhca5 - an LHC-type protein associated with photosystem I. Plant Mol. Biol. 54: 641-651 (2004).

Ganeteg U, Kulheim C, Andersson J, Jansson S. Is each light-harvesting complex protein important for plant fitness? Plant Physiol. 134: 502-509 (2004).

Ganeteg U, Strand A, Gustafsson P, Jansson S. The properties of the chlorophyll a/b-binding proteins Lhca2 and Lhca3 studied in vivo using antisense inhibition. Plant Physiol. 127: 150-158 (2001).

Gang DR, Beuerle T, Ullmann P, Werck-Reichhart D, Pichersky E. Differential production of meta hydroxylated phenylpropanoids in sweet basil peltate glandular trichomes and leaves is controlled by the activities of specific acyltransferases and hydroxylases. Plant Physiol. 130: 1536-1544 (2002).

Gansel X, Munos S, Tillard P, Gojon A. Differential regulation of the NO3- and NH4+ transporter genes AtNrt2.1 and AtAmt1.1 in Arabidopsis: relation with long-distance and local controls by N status of the plant. Plant J. 26: 143-155 (2001).

Gantulga D, Turan Y, Bevan DR, Esen A. The Arabidopsis At1g45130 and At3g52840 genes encode beta-galactosidases with activity toward cell wall polysaccharides. Phytochemistry 69: 1661-1670 (2008).

Gao D, Knight MR, Trewavas AJ, Sattelmacher B, Plieth C. Self-reporting Arabidopsis expressing pH and [Ca2+] indicators unveil ion dynamics in the cytoplasm and in the apoplast under abiotic stress. Plant Physiol. 134: 898-908 (2004).

Gao F, Gao Q, Duan X, Yue G, Yang A, Zhang J. Cloning of an H+-PPase gene from Thellungiella halophila and its heterologous expression to improve tobacco salt tolerance. J. Exp. Bot. 57: 3259-3270 (2006).

Gao L, Xiang CB. The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis. Plant Mol. Biol. 67: 125-134 (2008).

Gao MJ, Lydiate DJ, Li X, Lui H, Gjetvaj B, Hegedus DD, Rozwadowski K. Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings. Plant Cell 21: 54-71 (2009).

Gao MJ, Schafer UA, Parkin IA, Hegedus DD, Lydiate DJ, Hannoufa A. A novel protein from Brassica napus has a putative KID domain and responds to low temperature. Plant J. 33: 1073-1086 (2003).

Gao X, Marrison JL, Pool MR, Leech RM, Baker A. Castor bean isocitrate lyase lacking the putative peroxisomal targeting signal 1 ARM is imported into plant peroxisomes both in vitro and in vivo. Plant Physiol. 112: 1457-1464 (1996).

Gao X, Ren Z, Zhao Y, Zhang H. Overexpression of SOD2 increases salt tolerance of Arabidopsis. Plant Physiol. 133: 1873-1881 (2003).

Gao XQ, Li CG, Wei PC, Zhang XY, Chen J, Wang XC. The dynamic changes of tonoplasts in guard cells are important for stomatal movement in Vicia faba. Plant Physiol. 139: 1207-1216 (2005).

Gao Y, Wang S, Asami T, Chen JG. Loss-of-function mutations in the Arabidopsis heterotrimeric G-protein alpha subunit enhance the developmental defects of brassinosteroid signaling and biosynthesis mutants. Plant Cell Physiol. 49: 1013-1024 (2008).

Gao Y, Zeng Q, Guo J, Cheng J, Ellis BE, Chen JG. Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis. Plant J. 52: 1001-1013 (2007).

Gao YP, Young L, Bonham-Smith P, Gusta LV. Characterization and expression of plasma and tonoplast membrane aquaporins in primed seed of Brassica napus during germination under stress conditions. Plant Mol. Biol. 40: 635-644 (1999).

Gao-Rubinelli F, Marzluf GA. Identification and characterization of a nitrate transporter gene in Neurospora crassa. Biochem. Genet. 42: 21-34 (2004).

Garcia D, Fitz Gerald JN, Berger F. Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in Arabidopsis. Plant Cell 17: 52-60 (2005).

Garcia D, Saingery V, Chambrier P, Mayer U, Jurgens G, Berger F. Arabidopsis haiku mutants reveal new controls of seed size by endosperm. Plant Physiol. 131: 1661-1670 (2003).

Garcia EL, Mourad GS. A site-directed mutagenesis interrogation of the carboxy-terminal end of Arabidopsis thaliana threonine dehydratase/deaminase reveals a synergistic interaction between two effector-binding sites and contributes to the development of a novel selectable … Plant Mol. Biol. 55: 121-134 (2004).

Garcia I, Rodgers M, Pepin R, Hsieh TF, Matringe M. Characterization and subcellular compartmentation of recombinant 4-hydroxyphenylpyruvate dioxygenase from Arabidopsis in transgenic tobacco. Plant Physiol. 119: 1507-1516 (1999).

Garcia M, Myouga F, Takechi K, Sato H, Nabeshima K, Nagata N, Takio S, Shinozaki K, Takano H. An Arabidopsis homolog of the bacterial peptidoglycan synthesis enzyme MurE has an essential role in chloroplast development. Plant J. 53: 924-934 (2008).

Garcia ME, Lynch T, Peeters J, Snowden C, Finkelstein R. A small plant-specific protein family of ABI five binding proteins (AFPs) regulates stress response in germinating Arabidopsis seeds and seedlings. Plant Mol. Biol. 67: 643-658 (2008).

Garcia V, Bruchet H, Camescasse D, Granier F, Bouchez D, Tissier A. AtATM is essential for meiosis and the somatic response to DNA damage in plants. Plant Cell 15: 119-132 (2003).

Garcia-Cerdan JG, Sveshnikov D, Dewez D, Jansson S, Funk C, Schroder WP. Antisense inhibition of the PsbX protein affects PSII integrity in the higher plant Arabidopsis thaliana. Plant Cell Physiol. 50: 191-202 (2009).

Garcia-Hernandez M, Murphy A, Taiz L. Metallothioneins 1 and 2 have distinct but overlapping expression patterns in Arabidopsis. Plant Physiol. 118: 387-397 (1998).

Garcia-Mata C, Gay R, Sokolovski S, Hills A, Lamattina L, Blatt MR. Nitric oxide regulates K+ and Cl- channels in guard cells through a subset of abscisic acid-evoked signaling pathways. Proc. Natl. Acad. Sci. U.S.A. 100: 11116-11121 (2003).

Garcia-Ortiz MV, Ariza RR, Hoffman PD, Hays JB, Roldan-Arjona T. Arabidopsis thaliana AtPOLK encodes a DinB-like DNA polymerase that extends mispaired primer termini and is highly expressed in a variety of tissues. Plant J. 39: 84-97 (2004).

Garcia-Ortiz MV, Ariza RR, Roldan-Arjona T. An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana. Plant Mol. Biol. 47: 795-804 (2001).

Garciadeblas B, Barrero-Gil J, Benito B, Rodríguez-Navarro A. Potassium transport systems in the moss Physcomitrella patens: pphak1 plants reveal the complexity of potassium uptake. Plant J. 52: 1080-1093 (2007).

Garciadeblas B, Haro R, Benito B. Cloning of two SOS1 transporters from the seagrass Cymodocea nodosa. SOS1 transporters from Cymodocea and Arabidopsis mediate potassium uptake in bacteria. Plant Mol. Biol. 63: 479-490 (2007).

Garciarrubio A, Legaria JP, Covarrubias AA. Abscisic acid inhibits germination of mature Arabidopsis seeds by limiting the availability of energy and nutrients. Planta 203: 182-187 (1997).

Garcion C, Guilleminot J, Kroj T, Parcy F, Giraudat J, Devic M. AKRP and EMB506 are two ankyrin repeat proteins essential for plastid differentiation and plant development in Arabidopsis. Plant J. 48: 895-906 (2006).

Gardiner JC, Harper JD, Weerakoon ND, Collings DA, Ritchie S, Gilroy S, Cyr RJ, Marc J. A 90-kD phospholipase D from tobacco binds to microtubules and the plasma membrane. Plant Cell 13: 2143-2158 (2001).

Gardiner JC, Taylor NG, Turner SR. Control of cellulose synthase complex localization in developing xylem. Plant Cell 15: 1740-1748 (2003).

Garg AK, Sawers RJ, Wang H, Kim JK, Walker JM, Brutnell TP, Parthasarathy MV, Vierstra RD, Wu RJ. Light-regulated overexpression of an Arabidopsis phytochrome A gene in rice alters plant architecture and increases grain yield. Planta 223: 627-636 (2006).

Gargantini PR, Giammaria V, Grandellis C, Feingold SE, Maldonado S, Ulloa RM. Genomic and functional characterization of StCDPK1. Plant Mol. Biol. 70: 153-172 (2009).

Garlick AP, Moore C, Kruger NJ. Monitoring flux through the oxidative pentose phosphate pathway using [1-(14)C]gluconate. Planta 216: 265-272 (2002).

Garmier M, Carroll AJ, Delannoy E, Vallet C, Day DA, Small ID, Millar AH. Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis. Plant Physiol. 148: 1324-1341 (2008).

Garton S, Knight H, Warren GJ, Knight MR, Thorlby GJ. crinkled leaves 8 - a mutation in the large subunit of ribonucleotide reductase - leads to defects in leaf development and chloroplast division in Arabidopsis thaliana. Plant J. 50: 118-127 (2007).

Garwe D, Thomson JA, Mundree SG. Molecular characterization of XVSAP1, a stress-responsive gene from the resurrection plant Xerophyta viscosa Baker. J. Exp. Bot. 54: 191-201 (2003).

Garzon M, Eifler K, Faust A, Scheel H, Hofmann K, Koncz C, Yephremov A, Bachmair A. PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus. FEBS Lett. 581: 3189-3196 (2007).

Gas E, Flores-Perez U, Sauret-Gueto S, Rodriguez-Concepcion M. Hunting for plant nitric oxide synthase provides new evidence of a central role for plastids in nitric oxide metabolism. Plant Cell 21: 18-23 (2009).

Gasic K, Korban SS. Transgenic Indian mustard (Brassica juncea) plants expressing an Arabidopsis phytochelatin synthase (AtPCS1) exhibit enhanced As and Cd tolerance. Plant Mol. Biol. 64: 361-369 (2007).

Gasic K, Korban SS. Expression of Arabidopsis phytochelatin synthase in Indian mustard (Brassica juncea) plants enhances tolerance for Cd and Zn. Planta 225: 1277-1285 (2007).

Gaspar M, Sissoeff I, Bousser A, Roche O, Mahe A, Hoarau J. Transient variations of water transfer induced by HgCl2 in excised roots of young maize plants: new data on the inhibition process. Aust. J. Plant Physiol. 28: 1175-1186 (2001).

Gaspar YM, Nam J, Schultz CJ, Lee LY, Gilson PR, Gelvin SB, Bacic A. Characterization of the Arabidopsis lysine-rich arabinogalactan-protein AtAGP17 mutant (rat1) that results in a decreased efficiency of Agrobacterium transformation. Plant Physiol. 135: 2162-2171 (2004).

Gattolin S, Alandete-Saez M, Elliott K, Gonzalez-Carranza Z, Naomab E, Powell C, Roberts JA. Spatial and temporal expression of the response regulators ARR22 and ARR24 in Arabidopsis thaliana. J. Exp. Bot. 57: 4225-4233 (2006).

Gatzek S, Wheeler GL, Smirnoff N. Antisense suppression of l-galactose dehydrogenase in Arabidopsis thaliana provides evidence for its role in ascorbate synthesis and reveals light modulated l-galactose synthesis. Plant J. 30: 541-553 (2002).

Gaubier P, Wu HJ, Laudie M, Delseny M, Grellet F. A chlorophyll synthetase gene from Arabidopsis thaliana. Mol. Gen. Genet. 249: 58-64 (1995).

Gaude N, Brehelin C, Tischendorf G, Kessler F, Dormann P. Nitrogen deficiency in Arabidopsis affects galactolipid composition and gene expression and results in accumulation of fatty acid phytyl esters. Plant J. 49: 729-739 (2007).

Gaude N, Nakamura Y, Scheible WR, Ohta H, Dörmann P. Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis. Plant J. 56: 28-39 (2008).

Gaulin E, Drame N, Lafitte C, Torto-Alalibo T, Martinez Y, Ameline-Torregrosa C, Khatib M, Mazarguil H, Villalba-Mateos F, Kamoun S, Mazars C, Dumas B, Bottin A, Esquerre-Tugaye MT, Rickauer M. Cellulose binding domains of a Phytophthora cell wall protein are novel pathogen-associated molecular patterns. Plant Cell 18: 1766-1777 (2006).

Gavidia I, Perez-Bermudez P, Seitz HU. Cloning and expression of two novel aldo-keto reductases from Digitalis purpurea leaves. Eur. J. Biochem. 269: 2842-2850 (2002).

Gayet L, Picault N, Cazale AC, Beyly A, Lucas P, Jacquet H, Suso HP, Vavasseur A, Peltier G, Forestier C. Transport of antimony salts by Arabidopsis thaliana protoplasts over-expressing the human multidrug resistance-associated protein 1 (MRP1/ABCC1). FEBS Lett. 580: 6891-6897 (2006).

Gaymard F, Boucherez J, Briat JF. Characterization of a ferritin mRNA from Arabidopsis thaliana accumulated in response to iron through an oxidative pathway independent of abscisic acid. Biochem. J. 318: 67-73 (1996).

Gaymard F, Pilot G, Lacombe B, Bouchez D, Bruneau D, Boucherez J, Michaux-Ferriere N, Thibaud JB, Sentenac H. Identification and disruption of a plant shaker-like outward channel involved in K+ release into the xylem sap. Cell 94: 647-655 (1998).

Gazzani S, Gendall AR, Lister C, Dean C. Analysis of the molecular basis of flowering time variation in Arabidopsis accessions. Plant Physiol. 132: 1107-1114 (2003).

Gazzani S, Lawrenson T, Woodward C, Headon D, Sablowski R. A link between mRNA turnover and RNA interference in Arabidopsis. Science 306: 1046-1048 (2004).

Gazzarrini S, Lejay L, Gojon A, Ninnemann O, Frommer WB, von Wiren N. Three functional transporters for constitutive, diurnally regulated, and starvation-induced uptake of ammonium into Arabidopsis roots. Plant Cell 11: 937-948 (1999).

Gazzarrini S, McCourt P. Cross-talk in plant hormone signalling: what Arabidopsis mutants are telling us. Ann. Bot. (Lond.) 91: 605-612 (2003).

Ge C, Cui X, Wang Y, Hu Y, Fu Z, Zhang D, Cheng Z, Li J. BUD2, encoding an S-adenosylmethionine decarboxylase, is required for Arabidopsis growth and development. Cell. Res. 16: 446-456 (2006).

Ge L, Chen H, Jiang JF, Zhao Y, Xu ML, Xu YY, Tan KH, Xu ZH, Chong K. Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity. Plant Physiol. 135: 1502-1513 (2004).

Ge X, Wang H, Cao K. Transformation by T-DNA integration causes highly sterile phenotype independent of transgenes in Arabidopsis thaliana. Plant Cell Rep. 27: 1341-1348 (2008).

Gebbie LK, Burn JE, Hocart CH, Williamson RE. Genes encoding ADP-ribosylation factors in Arabidopsis thaliana L. Heyn.; genome analysis and antisense suppression. J. Exp. Bot. 56: 1079-1091 (2005).

Gebert M, Dresselhaus T, Sprunck S. F-actin organization and pollen tube tip growth in Arabidopsis are dependent on the gametophyte-specific armadillo repeat protein ARO1. Plant Cell 20: 2798-2814 (2008).

Gebhardt C, Walkemeier B, Henselewski H, Barakat A, Delseny M, Stuber K. Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome. Plant J. 34: 529-541 (2003).

Geelen D, Lurin C, Bouchez D, Frachisse JM, Lelievre F, Courtial B, Barbier-Brygoo H, Maurel C. Disruption of putative anion channel gene AtCLC-a in Arabidopsis suggests a role in the regulation of nitrate content. Plant J. 21: 259-267 (2000).

Geiger D, Becker D, Vosloh D, Gambale F, Palme K, Rehers M, Anschuetz U, Dreyer I, Kudla J, Hedrich R. Heteromeric AtKC1.AKT1 channels in Arabidopsis roots facilitate growth under K+-limiting conditions. J. Biol. Chem. 284: 21288-21295 (2009).

Geisler M, Blakeslee JJ, Bouchard R, Lee OR, Vincenzetti V, Bandyopadhyay A, Titapiwatanakun B, Peer WA, Bailly A, Richards EL, Ejendal KF, Smith AP, Baroux C, Grossniklaus U, Muller A, Hrycyna CA, Dudler R, Murphy AS, Martinoia E. Cellular efflux of auxin catalyzed by the Arabidopsis MDR/PGP transporter AtPGP1. Plant J. 44: 179-194 (2005).

Geisler M, Frangne N, Gomes E, Martinoia E, Palmgren MG. The ACA4 gene of Arabidopsis encodes a vacuolar membrane calcium pump that improves salt tolerance in yeast. Plant Physiol. 124: 1814-1827 (2000).

Geisler M, Jablonska B, Springer PS. Enhancer trap expression patterns provide a novel teaching resource. Plant Physiol. 130: 1747-1753 (2002).

Geisler M, Kleczkowski LA, Karpinski S. A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis. Plant J. 45: 384-398 (2006).

Geisler M, Murphy AS. The ABC of auxin transport: the role of P-glycoproteins in plant development. FEBS Lett. 580: 1094-1102 (2006).

Geisler M, Wilczynska M, Karpinski S, Kleczkowski LA. Toward a blueprint for UDP-glucose pyrophosphorylase structure/function properties: homology-modeling analyses. Plant Mol. Biol. 56: 783-794 (2004).

Geisler MJ, Deppong DO, Nadeau JA, Sack FD. Stomatal neighbor cell polarity and division in Arabidopsis. Planta 216: 571-579 (2003).

Geisler-Lee J, Gallie DR. Aleurone cell identity is suppressed following connation in maize kernels. Plant Physiol. 139: 204-212 (2005).

Geisler-Lee J, Geisler M, Coutinho PM, Segerman B, Nishikubo N, Takahashi J, Aspeborg H, Djerbi S, Master E, Andersson-Gunneras S, Sundberg B, Karpinski S, Teeri TT, Kleczkowski LA, Henrissat B, Mellerowicz EJ. Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol. 140: 946-962 (2006).

Geisler-Lee J, O'Toole N, Ammar R, Provart NJ, Millar AH, Geisler M. A predicted interactome for Arabidopsis. Plant Physiol. 145: 317-329 (2007).

Geldner N. The plant endosomal system-its structure and role in signal transduction and plant development. Planta 219: 547-560 (2004).

Geldner N, Denervaud-Tendon V, Hyman DL, Mayer U, Stierhof YD, Chory J. Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. Plant J. 59: 169-178 (2009).

Gendreau E, Orbovic V, Hofte H, Traas J. Gibberellin and ethylene control endoreduplication levels in the Arabidopsis thaliana hypocotyl. Planta 209: 513-516 (1999).

Gendreau E, Traas J, Desnos T, Grandjean O, Caboche M, Hofte H. Cellular basis of hypocotyl growth in Arabidopsis thaliana. Plant Physiol. 114: 295-305 (1997).

Gendrel AV, Colot V. Arabidopsis epigenetics: when RNA meets chromatin. Curr. Opin. Plant Biol. 8: 142-147 (2005).

Genger RK, Kovac KA, Dennis ES, Peacock WJ, Finnegan EJ. Multiple DNA methyltransferase genes in Arabidopsis thaliana. Plant Mol. Biol. 41: 269-278 (1999).

Genger RK, Peacock WJ, Dennis ES, Finnegan EJ. Opposing effects of reduced DNA methylation on flowering time in Arabidopsis thaliana. Planta 216: 461-466 (2003).

Gennidakis S, Rao S, Greenham K, Uhrig RG, O'Leary B, Snedden WA, Lu C, Plaxton WC. Bacterial- and plant-type phosphoenolpyruvate carboxylase polypeptides interact in the hetero-oligomeric class-2 PEPC complex of developing castor oil seeds. Plant J. 52: 839-849 (2007).

Genoud T, Buchala AJ, Chua NH, Metraux JP. Phytochrome signalling modulates the SA-perceptive pathway in Arabidopsis. Plant J. 31: 87-95 (2002).

Genoud T, Trevino Santa Cruz MB, Metraux JP. Numeric simulation of plant signaling networks. Plant Physiol. 126: 1430-1437 (2001).

Genovesi V, Fornale S, Fry SC, Ruel K, Ferrer P, Encina A, Sonbol FM, Bosch J, Puigdomenech P, Rigau J, Caparros-Ruiz D. ZmXTH1, a new xyloglucan endotransglucosylase/hydrolase in maize, affects cell wall structure and composition in Arabidopsis thaliana. J. Exp. Bot. 59: 875-889 (2008).

George TS, Richardson AE, Hadobas PA, Simpson RJ. Characterization of transgenic Trifolium subterraneum L. which expresses phyA and releases extracellular phytase: growth and P nutrition in laboratory media and soil. Plant Cell Environ. 27: 1351-1361 (2004).

Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M. Large-scale identification of leaf senescence-associated genes. Plant J. 36: 629-642 (2003).

Gerbeau P, Amodeo G, Henzler T, Santoni V, Ripoche P, Maurel C. The water permeability of Arabidopsis plasma membrane is regulated by divalent cations and pH. Plant J. 30: 71-81 (2002).

Germain V, Rylott EL, Larson TR, Sherson SM, Bechtold N, Carde JP, Bryce JH, Graham IA, Smith SM. Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings. Plant J. 28: 1-12 (2001).

Germann S, Juul-Jensen T, Letarnec B, Gaudin V. DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci. Plant J. 48: 153-163 (2006).

Gershater M, Sharples K, Edwards R. Carboxylesterase activities toward pesticide esters in crops and weeds. Phytochemistry 67: 2561-2567 (2006).

Geuting V, Kobbe D, Hartung F, Dürr J, Focke M, Puchta H. Two distinct MUS81-EME1 complexes from Arabidopsis process Holliday junctions. Plant Physiol. 150: 1062-1071 (2009).

Ghandilyan A, Ilk N, Hanhart C, Mbengue M, Barboza L, Schat H, Koornneef M, El-Lithy M, Vreugdenhil D, Reymond M, Aarts MG. A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations. J. Exp. Bot. 60: 1409-1425 (2009).

Ghanevati M, Jaworski JG. Engineering and mechanistic studies of the Arabidopsis FAE1 beta-ketoacyl-CoA synthase, FAE1 KCS. Eur. J. Biochem. 269: 3531-3539 (2002).

Gharbi I, Ricard B, Rolin D, Maucourt M, Andrieu MH, Bizid E, Smiti S, Brouquisse R. Effect of hexokinase activity on tomato root metabolism during prolonged hypoxia. Plant Cell Environ. 30: 508-517 (2007).

Ghassemian M, Lutes J, Chang HS, Lange I, Chen W, Zhu T, Wang X, Lange BM. Abscisic acid-induced modulation of metabolic and redox control pathways in Arabidopsis thaliana. Phytochemistry 69: 2899-2911 (2008).

Ghassemian M, Nambara E, Cutler S, Kawaide H, Kamiya Y, McCourt P. Regulation of abscisic acid signaling by the ethylene response pathway in Arabidopsis. Plant Cell 12: 1117-1126 (2000).

Ghelis T, Bolbach G, Clodic G, Habricot Y, Miginiac E, Sotta B, Jeannette E. Protein tyrosine kinases and protein tyrosine phosphatases are involved in ABA-dependent processes in Arabidopsis thaliana seeds and suspension cells. Plant Physiol. 148: 1668-1680 (2008).

Ghislain M, Frankard V, Vandenbossche D, Matthews BF, Jacobs M. Molecular analysis of the aspartate kinase-homoserine dehydrogenase gene from Arabidopsis thaliana. Plant Mol. Biol. 24: 835-851 (1994).

Giacomelli L, Masi A, Ripoll DR, Lee MJ, van Wijk KJ. Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low. Plant Mol. Biol. 65: 627-644 (2007).

Giacomelli L, Rudella A, van Wijk KJ. High light response of the thylakoid proteome in Arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol. 141: 685-701 (2006).

Giakountis A, Coupland G. Phloem transport of flowering signals. Curr. Opin. Plant Biol. 11: 687-694 (2008).

Gibala M, Kicia M, Sakamoto W, Gola EM, Kubrakiewicz J, Smakowska E, Janska H. The lack of mitochondrial AtFtsH4 protease alters Arabidopsis leaf morphology at the late stage of rosette development under short day photoperiod. Plant J. 59: 685-699 (2009).

Gibeaut DM, Hulett J, Cramer GR, Seemann JR. Maximal biomass of Arabidopsis thaliana using a simple, low-maintenance hydroponic method and favorable environmental conditions. Plant Physiol. 115: 317-319 (1997).

Gibon Y, Blaesing OE, Hannemann J, Carillo P, Hohne M, Hendriks JH, Palacios N, Cross J, Selbig J, Stitt M. A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16: 3304-3325 (2004).

Gibon Y, Pyl ET, Sulpice R, Lunn JE, Höhne M, Gunther M, Stitt M. Adjustment of growth, star