Publications

Preprints and manuscripts under review

Shemonti AS, Eisenberg JD, Heuckeroth RO, Howard MJ, Pothen A, Rajwa B. Generative modeling of the enteric nervous system employing point pattern analysis and graph construction. arXiv; 2022. https://doi.org/10.48550/arXiv.2210.15044

Shemonti AS, Plebani E, Biscola NP, Jaffey DM, Havton LA, Keast JR, Pothen A, Dundar MM, Rajwa B. A novel statistical methodology for quantifying the spatial arrangements of axons in peripheral nerves. arXiv; 2022. https://doi.org/10.48550/arXiv.2210.09554

Cheng Y, Rajwa B, Dundar M. Bayesian nonparametrics for non-exhaustive learning. arXiv:190809736 [cs, stat]. 2019;

Peer-reviewed papers (in scientific journals)

Robinson JP, Ostafe R, Iyengar SN, Rajwa B, Fischer R. Flow cytometry: the next revolution. Cells. 2023;12(14):1875. https://doi.org/10.3390/cells12141875

Shin S, Doh I-J, Okeyo K, Bae E, Robinson JP, Rajwa B. Hybrid raman and laser-induced breakdown spectroscopy for food authentication applications. Molecules. 2023;28(16):6087. https://doi.org/10.3390/molecules28166087

Shin S, Wu X, Patsekin V, Doh I-J, Bae E, Robinson JP, Rajwa B. LIBS fingerprinting-based analytical approaches for food authentication. Spectrochimica Acta Part B: Atomic Spectroscopy. 2023;106693. https://doi.org/10.1016/j.sab.2023.106693

Shemonti AS, Plebani E, Biscola NP, Jaffey DM, Havton LA, Keast JR, Pothen A, Dundar MM, et al. A novel statistical methodology for quantifying the spatial arrangements of axons in peripheral nerves. Frontiers in Neuroscience. 2023;17. https://doi.org/10.3389/fnins.2023.1072779

Wu X, Shin S, Gondhalekar C, Patsekin V, Bae E, Robinson JP, Rajwa B. Rapid food authentication using a portable laser-induced breakdown spectroscopy system. Foods. 2023;12(2):402. https://doi.org/10.3390/foods12020402

Asem EK, Rajwa B. Impact of combination of short lecture and group discussion on the learning of physiology by nonmajor undergraduates. Advances in Physiology Education. 2023;47(1):1–12. https://doi.org/10.1152/advan.00022.2022

Lee JJ, Aime MC, Rajwa B, Bae E. Machine learning-based classification of mushrooms using a smartphone application. Applied Sciences. 2022;12(22):11685. https://doi.org/10.3390/app122211685

Scherl DS, Coffman L, Mansoor A, Rajwa B, Patsekin V, Robinson JP. A semi-automated method for measuring biofilm accumulation on the teeth using quantitative light-induced fluorescence in dogs and cats. J Vet Dent. 2022;39(2):122–32. https://doi.org/10.1177/08987564221081991

Doh I-J, Dowden B, Patsekin V, Rajwa B, Robinson JP, Bae E. Development of a smartphone-integrated reflective scatterometer for bacterial identification. Sensors. 2022;22(7):2646. https://doi.org/10.3390/s22072646

10.

Plebani E, Biscola NP, Havton LA, Rajwa B, Shemonti AS, Jaffey D, Powley T, Keast JR, et al. High-throughput segmentation of unmyelinated axons by deep learning. Sci Rep. 2022;12(1):1198. https://doi.org/10.1038/s41598-022-04854-3

11.

Nestor-Kalinoski A, Smith-Edwards KM, Meerschaert K, Margiotta JF, Rajwa B, Davis BM, Howard MJ. Unique neural circuit connectivity of mouse proximal, middle, and distal colon defines regional colonic motor patterns. Cellular and Molecular Gastroenterology and Hepatology. 2022;13(1):309-337.e3. https://doi.org/10.1016/j.jcmgh.2021.08.016

12.

Franco J, Rajwa B, Gomes P, HogenEsch H. Local and systemic changes in lipid profile as potential biomarkers for canine atopic dermatitis. Metabolites. 2021;11(10):670. https://doi.org/10.3390/metabo11100670

13.

Bieberich AA, Rajwa B, Irvine A, Fatig RO, Fekete A, Jin H, Kutlina E, Urban L. Acute cell stress screen with supervised machine learning predicts cytotoxicity of excipients. Journal of Pharmacological and Toxicological Methods. 2021;111:107088. https://doi.org/10.1016/j.vascn.2021.107088

14.

Doh I-J, Kim H, Sturgis J, Rajwa B, Robinson JP, Bae E. Optical multi-channel interrogation instrument for bacterial colony characterization. PLoS One. 2021;16(2):e0247721. https://doi.org/10.1371/journal.pone.0247721

15.

Cortés-Selva D, Gibbs L, Ready A, Ekiz HA, O’Connell R, Rajwa B, Fairfax KC. Maternal schistosomiasis impairs offspring Interleukin-4 production and B cell expansion. PLoS Pathogens. 2021;17(2):e1009260. https://doi.org/10.1371/journal.ppat.1009260

16.

Kobos L, Ferreira CR, Sobreira TJP, Rajwa B, Shannahan J. A novel experimental workflow to determine the impact of storage parameters on the mass spectrometric profiling and assessment of representative phosphatidylethanolamine lipids in mouse tissues. Anal Bioanal Chem. 2021;413(7):1837–49. https://doi.org/10.1007/s00216-020-03151-0

17.

Tan ZT, Ward M, Phillips RJ, Zhang X, Jaffey DM, Chesney L, Rajwa B, Baronowsky EA, et al. Stomach region stimulated determines effects on duodenal motility in rats. American Journal of Physiology-Regulatory, Integrative and Comparative Physiology. 2021;320(3):R331–41. https://doi.org/10.1152/ajpregu.00111.2020

18.

Franco J, Rajwa B, Ferreira CR, Sundberg JP, HogenEsch H. Lipidomic profiling of the epidermis in a mouse model of dermatitis reveals sexual dimorphism and changes in lipid composition before the onset of clinical disease. Metabolites. 2020;10(7):299. https://doi.org/10.3390/metabo10070299

19.

Gondhalekar C, Biela E, Rajwa B, Bae E, Patsekin V, Sturgis J, Reynolds C, Doh I-J, et al. Detection of E. coli labeled with metal-conjugated antibodies using lateral-flow assay and laser-induced breakdown spectroscopy. Anal Bioanal Chem. 2020;412(6):1291–301. https://doi.org/10.1007/s00216-019-02347-3

20.

Ward MP, Gupta A, Wo JM, Rajwa B, Furness JB, Powley TL, Nowak T. An emerging method to noninvasively measure and identify vagal response markers to enable bioelectronic control of gastroparesis symptoms with gastric electrical stimulation. J Neurosci Methods. 2020;336:108631. https://doi.org/10.1016/j.jneumeth.2020.108631

21.

Cossarizza A, Chang H-D, Radbruch A, Acs A, Adam D, Adam-Klages S, Agace WW, Aghaeepour N, et al. Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). Eur J Immunol. 2019;49(10):1457–973. https://doi.org/10.1002/eji.201970107

22.

Allan MC, Grush EN, Rajwa BP, Butzke CE, Mauer LJ. Determination of the water activities of wines and spirits. Food Anal Meth. 2019;12(12):2753–63. https://doi.org/10.1007/s12161-019-01632-2

23.

Doh I-J, Gondhalekar C, Patsekin V, Rajwa B, Hernandez K, Bae E, Robinson JP. A portable spark-induced breakdown spectroscopic (SIBS) instrument and its analytical performance. Appl Spectrosc. 2019;73(6):698–708. https://doi.org/10.1177/0003702819844792

24.

Cortes‐Selva D, Ready A, Gibbs L, Rajwa B, Fairfax KC. IL-4 promotes stromal cell expansion and is critical for development of a type-2, but not a type 1 immune response. European Journal of Immunology. 2019;49(3):428–42. https://doi.org/10.1002/eji.201847789

25.

Allan MC, Rajwa B, Mauer LJ. Effects of sugars and sugar alcohols on the gelatinization temperature of wheat starch. Food Hydrocolloids. 2018;84:593–607. https://doi.org/10.1016/j.foodhyd.2018.06.035

26.

Cortes-Selva D, Elvington AF, Ready A, Rajwa B, Pearce EJ, Randolph GJ, Fairfax KC. Schistosoma mansoni infection-induced transcriptional changes in hepatic macrophage metabolism correlate with an athero-protective phenotype. Front Immunol. 2018;9:2580. https://doi.org/10.3389/fimmu.2018.02580

27.

Gondhalekar C, Rajwa B, Patsekin V, Ragheb K, Sturgis J, Robinson JP. Alternatives to current flow cytometry data analysis for clinical and research studies. Methods. 2018;134:113–29. https://doi.org/10.1016/j.ymeth.2017.12.009

28.

Cossarizza A, Chang H-D, Radbruch A, Akdis M, Andrä I, Annunziato F, Bacher P, Barnaba V, et al. Guidelines for the use of flow cytometry and cell sorting in immunological studies. Eur J Immunol. 2017;47(10):1584–797. https://doi.org/10.1002/eji.201646632

29.

Rajwa B. Effect-size measures as descriptors of assay quality in high-content screening: a brief review of some available methodologies. ASSAY and Drug Development Technologies. 2017;15(1):15–29. https://doi.org/10.1089/adt.2016.740

30.

Zhang C, Huang K-C, Rajwa B, Li J, Yang S, Lin H, Liao C, Eakins G, et al. Stimulated Raman scattering flow cytometry for label-free single-particle analysis. Optica. 2017;4(1):103–9. https://doi.org/10.1364/OPTICA.4.000103

31.

Kim H, Rajwa B, Bhunia AK, Robinson JP, Bae E. Development of a multispectral light-scatter sensor for bacterial colonies. J Biophotonics. 2017;10(5):634–44. https://doi.org/10.1002/jbio.201500338

32.

Rajwa B, Wallace PK, Griffiths EA, Dundar M. Automated assessment of disease progression in acute myeloid leukemia by probabilistic analysis of flow cytometry data. IEEE Transactions on Biomedical Engineering. 2017;64(5):1089–98. https://doi.org/10.1109/TBME.2016.2590950

33.

Azad A, Rajwa B, Pothen A. Immunophenotype discovery, hierarchical organization, and template-based classification of flow cytometry samples. Front Oncol. 2016;6:UNSP 188. https://doi.org/10.3389/fonc.2016.00188

34.

Mohammed SI, Ren W, Flowers L, Rajwa B, Chibwesha CJ, Parham GP, Irudayaraj JMK. Point-of-care test for cervical cancer in LMICs. Oncotarget. 2016;7(14):18787–97. https://doi.org/10.18632/oncotarget.7709

35.

Ito D, Childress M, Mason N, Winter A, O’Brien T, Henson M, Borgatti A, Lewellen M, et al. A double blinded, placebo-controlled pilot study to examine reduction of CD34+/CD117+/CD133+lymphoma progenitor cells and duration of remission induced by neoadjuvant valspodar in dogs with large B-cell lymphoma. F1000Res. 2015;4:42. https://doi.org/10.12688/f1000research.6055.3

36.

Mansoor A, Patsekin V, Scherl D, Robinson JP, Rajwa B. A statistical modeling approach to computer-aided quantification of dental biofilm. IEEE Journal of Biomedical and Health Informatics. 2015;19(1):358–66. https://doi.org/10.1109/JBHI.2014.2310204

37.

Dundar M, Akova F, Yerebakan HZ, Rajwa B. A non-parametric Bayesian model for joint cell clustering and cluster matching: identification of anomalous sample phenotypes with random effects. BMC Bioinformatics. 2014;15(1):314. https://doi.org/10.1186/1471-2105-15-314

38.

Singh AK, Bettasso AM, Bae E, Rajwa B, Dundar MM, Forster MD, Liu L, Barrett B, et al. Laser optical sensor, a label-free on-plate Salmonella Enterica colony detection tool. mBio. 2014;5(1):e01019-13. https://doi.org/10.1128/mBio.01019-13

39.

Novo D, Gregori G, Rajwa B. Generalized unmixing model for multispectral flow cytometry utilizing nonsquare compensation matrices. Cytom Part A. 2013;83A(5):508–20. https://doi.org/10.1002/cyto.a.22272

40.

Robinson JP, Patsekin V, Holdman C, Ragheb K, Sturgis J, Fatig R, Avramova LV, Rajwa B, et al. High-throughput secondary screening at the single-cell level. JALA. 2013;18(1):85–98. https://doi.org/10.1177/2211068212456978

41.

Ahmed WM, Bayraktar B, Bhunia AK, Hirleman ED, Robinson JP, Rajwa B. Classification of bacterial contamination using image processing and distributed computing. IEEE J Biomed Health Inform. 2013;17(1):232–9. https://doi.org/10.1109/TITB.2012.2222654

42.

Bhunia AK, Bae E, Rajwa B, Robinson JP, Hirleman ED. Utilization of optical forward scatter image biological database: foodborne pathogen colony differentiation and detection. Yan X, Juneja VK, Fratamico PM, Smith JL, editors. Omics, Microbial Modeling and Technologies for Foodborne Pathogens. 2012;553–78.

43.

Huff K, Aroonnual A, Littlejohn AEF, Rajwa B, Bae E, Banada PP, Patsekin V, Hirleman ED, et al. Light-scattering sensor for real-time identification of Vibrio parahaemolyticus, Vibrio vulnificus and Vibrio cholerae colonies on solid agar plate. Microb Biotechnol. 2012;5(5):607–20. https://doi.org/10.1111/j.1751-7915.2012.00349.x

44.

Bae E, Ying D, Kramer D, Patsekin V, Rajwa B, Holdman C, Sturgis J, Davisson VJ, et al. Portable bacterial identification system based on elastic light scatter patterns. J Biol Eng. 2012;6(1):12. https://doi.org/10.1186/1754-1611-6-12

45.

Tsiper MV, Sturgis J, Avramova LV, Parakh S, Fatig R, Juan-Garcia A, Li N, Rajwa B, et al. Differential mitochondrial toxicity screening and multi-parametric data analysis. PLoS One. 2012;7(10):e45226. https://doi.org/10.1371/journal.pone.0045226

46.

Robinson JP, Rajwa B, Patsekin V, Davisson VJ. Computational analysis of high-throughput flow cytometry data. Expert Opin Drug Discov. 2012;7(8):679–93. https://doi.org/10.1517/17460441.2012.693475

47.

Bae E, Patsekin V, Rajwa B, Bhunia AK, Holdman C, Davisson VJ, Hirleman ED, Robinson JP. Development of a microbial high-throughput screening instrument based on elastic light scatter patterns. Rev Sci Instrum. 2012;83(4):044304. https://doi.org/10.1063/1.3697853

48.

Grégori G, Patsekin V, Rajwa B, Jones J, Ragheb K, Holdman C, Robinson JP. Hyperspectral cytometry at the single-cell level using a 32-channel photodetector. Cytometry Part A. 2012;81A(1):35–44. https://doi.org/10.1002/cyto.a.21120

49.

Bernas T, Starosolski R, Robinson JP, Rajwa B. Application of detector precision characteristics and histogram packing for compression of biological fluorescence micrographs. Comput Methods Programs Biomed. 2012;108(2):511–23. https://doi.org/doi: 10.1016/j.cmpb.2011.03.012

50.

Rajwa B. Just compensation? Cytometry Part A. 2011;79A(12):973–4. https://doi.org/10.1002/cyto.a.21118

51.

Robinson J Paul, Patsekin Valery, Rajwa Bartek, Davisson V Jo, Li Nianyu, Li P. High-throughput flow cytometry. Genetic Engineering & Biotechnology News. 2011;31(8):20–2. https://doi.org/10.1089/gen.31.8.08

52.

Rajwa B, Dundar MM, Akova F, Bettasso A, Patsekin V, Dan Hirleman E, Bhunia AK, Robinson JP. Discovering the unknown: Detection of emerging pathogens using a label-free light-scattering system. Cytometry Part A. 2010;77A(12):1103–12. https://doi.org/10.1002/cyto.a.20978

53.

Akova F, Dundar M, Davisson VJ, Hirleman ED, Bhunia AK, Robinson JP, Rajwa B. A machine-learning approach to detecting unknown bacterial serovars. Statistical Analy Data Mining. 2010;3(5):289–301. https://doi.org/10.1002/sam.10085

54.

Duerstock BS, Cirillo J, Rajwa B. Theta rotation and serial registration of light microscopical images using a novel camera rotating device. Microsc microanal. 2010;16(3):239–47. https://doi.org/10.1017/S1431927610000073

55.

Banada PP, Huff K, Bae E, Rajwa B, Aroonnual A, Bayraktar B, Adil A, Robinson JP, et al. Label-free detection of multiple bacterial pathogens using light-scattering sensor. Biosens Bioelectron. 2009;24(6):1685–92. https://doi.org/10.1016/j.bios.2008.08.053

56.

Li M, Ong SS, Rajwa B, Thieu VT, Geahlen RL, Harrison ML. The SH3 domain of Lck modulates T-Cell receptor-dependent activation of extracellular signal-regulated kinase through activation of Raf-1. Mol Cell Biol. 2008;28(2):630–41. https://doi.org/10.1128/MCB.00150-07

57.

Leavesley S, Jiang Y, Patsekin V, Rajwa B, Robinson JP. An excitation wavelength-scanning spectral imaging system for preclinical imaging. Rev Sci Instrum. 2008;79(2):023707. https://doi.org/10.1063/1.2885043

58.

Bernas T, Asem E, Robinson J, Rajwa B. Application of wavelet denoising to improve compression efficiency while preserving integrity of digital micrographs. Journal of Microscopy. 2008;231(1):81–96.

59.

Bernas T, Asem EK, Robinson JP, Rajwa B. Quadratic form: A robust metric for quantitative comparison of flow cytometric histograms. Cytometry Part A. 2008;73A(8):715–26. https://doi.org/10.1002/cyto.a.20586

60.

Ahmed WM, Leavesley SJ, Rajwa B, Ayyaz MN, Ghafoor A, Robinson JP. State of the art in information extraction and quantitative analysis for multimodality biomolecular imaging. Proc IEEE. 2008;96(3):512–31. https://doi.org/10.1109/JPROC.2007.913556

61.

Rajwa B, Venkatapathi M, Ragheb K, Banada PP, Hirleman ED, Lary T, Robinson JP. Automated classification of bacterial particles in flow by multiangle scatter measurement and support vector machine classifier. Cytom Part A. 2008;73A(4):369–79. https://doi.org/10.1002/cyto.a.20515

62.

Venkatapathi M, Rajwa B, Ragheb K, Banada PP, Lary T, Robinson JP, Hirleman ED. High speed classification of individual bacterial cells using a model-based light scatter system and multivariate statistics. Appl Optics. 2008;47(5):678–86. https://doi.org/10.1364/AO.47.000678

63.

Banada PP, Guo S, Bayraktar B, Bae E, Rajwa B, Robinson JP, Hirleman ED, Bhunia AK. Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species. Biosens Bioelectron. 2007;22(8):1664–71. https://doi.org/10.1016/j.bios.2006.07.028

64.

Ahmed WM, Ayyaz MN, Rajwa B, Khan F, Ghafoor A, Robinson JP. Semantic analysis of biological imaging data: challenges and opportunities. Int J Semant Comput. 2007;1(1):67–85. https://doi.org/10.1142/S1793351X07000032

65.

Xi P, Rajwa B, Jones JT, Robinson JP. The design and construction of a cost-efficient confocal laser scanning microscope. Am J Phys. 2007;75(3):203–7. https://doi.org/10.1119/1.2388973

66.

Bernas T, Barnes D, Asem EK, Robinson JP, Rajwa B. Precision of light intensity measurement in biological optical microscopy. J Microsc. 2007;226(2):163–74. https://doi.org/10.1111/j.1365-2818.2007.01764.x

67.

Krzeszowiec W, Rajwa B, Dobrucki J, Gabrys H. Actin cytoskeleton in Arabidopsis thaliana under blue and red light. Biol Cell. 2007;99(5):251–60. https://doi.org/10.1042/BC20060077

68.

Rajwa B, Bernas T, Acker H, Dobrucki J, Robinson JP. Single- and two-photon spectral imaging of intrinsic fluorescence of transformed human hepatocytes. Microscopy Research and Technique. 2007;70(10):869–79. https://doi.org/10.1002/jemt.20497

69.

Rajwa B. Image cytometry goes multiphoton. Cytom Part A. 2007;71A(12):973–5. https://doi.org/10.1002/cyto.a.20479

70.

Bayraktar B, Bernas T, Robinson JP, Bartek Rajwa. A numerical recipe for accurate image reconstruction from discrete orthogonal moments. Pattern Recognition. 2007;40(2):659–69. https://doi.org/10.1016/j.patcog.2006.03.009

71.

Bernas T, Asem EK, Robinson JP, Rajwa B. Compression of fluorescence microscopy images based on the signal-to-noise estimation. Microsc Res Tech. 2006;69(1):1–9. https://doi.org/10.1002/jemt.20259

72.

Bayraktar B, Banada PP, Jr EDH, Bhunia AK, Robinson JP, Rajwa BP. Feature extraction from light-scatter patterns of Listeria colonies for identification and classification. JBO. 2006;11(3):034006. https://doi.org/10.1117/1.2203987

73.

Wolnicka-Glubisz A, Rajwa B, Dobrucki J, Skrzeczynska-Monucznik J, van Henegouwen GB, Sarna T. Phototoxicity, distribution and kinetics of association of UVA-activated chlorpromazine, 8-methoxypsoralen, and 4.6,4 ’-trimethylangelicin in Jurkat cells. J Photochem Photobiol B-Biol. 2005;78(2):155–64. https://doi.org/10.1016/j.jphotobiol.2004.11.002

74.

McNally HA, Rajwa B, Sturgis J, Robinson JP. Comparative three-dimensional imaging of living neurons with confocal and atomic force microscopy. J Neurosci Methods. 2005;142(2):177–84. https://doi.org/10.1016/j.jneumeth.2004.08.018

75.

Kołcz J, Drukała J, Bzowska M, Rajwa B, Korohoda W, Malec E. The expression of connexin 43 in children with Tetralogy of Fallot. Cell Mol Biol Lett. 2005;10(2):287–303.

76.

Bernas T, Robinson JP, Asem EK, Rajwa B. Loss of image quality in photobleaching during microscopic imaging of fluorescent probes bound to chromatin. J Biomed Opt. 2005;10(6):064015. https://doi.org/10.1117/1.2136313

77.

Rajwa B, McNally HA, Varadharajan P, Sturgis J, Robinson JP. AFM/CLSM data visualization and comparison using an open-source toolkit. Microsc Res Tech. 2004;64(2):176–84. https://doi.org/10.1002/jemt.20067

78.

Czyz J, Rajwa B, Bzowska M, Dobrucki J, Korohoda W. Spreading-independent growth of normal fibroblasts in three-dimensional cultures. Folia Biol (Krakow). 2004;52(1–2):19–24.

79.

Wu J, Rajwa B, Filmer DL, Hoffmann CM, Yuan B, Chiang C-S, Sturgis J, Robinson JP. Analysis of orientations of collagen fibers by novel fiber-tracking software. Microscopy and Microanalysis. 2003;9(6):574–80. https://doi.org/10.1017/S1431927603030277

80.

Wu J, Rajwa B, Filmer DL, Hoffmann CM, Yuan B, Chiang C, Sturgis J, Robinson JP. Automated quantification and reconstruction of collagen matrix from 3D confocal datasets. Journal of Microscopy. 2003;210(2):158–65. https://doi.org/10.1046/j.1365-2818.2003.01191.x

81.

Li N, Ragheb K, Lawler G, Sturgis J, Rajwa B, Melendez JA, Robinson JP. Mitochondrial Complex I inhibitor rotenone induces apoptosis through enhancing mitochondrial reactive oxygen species production *. Journal of Biological Chemistry. 2003;278(10):8516–25. https://doi.org/10.1074/jbc.M210432200

82.

Li N, Ragheb K, Lawler G, Sturgis J, Rajwa B, Melendez JA, Robinson JP. DPI induces mitochondrial superoxide-mediated apoptosis. Free Radical Biology and Medicine. 2003;34(4):465–77. https://doi.org/10.1016/S0891-5849(02)01325-4

83.

Drukala J, Rajwa B, Pietrzkowski Z, Korohoda W. Comparison of daunomycin effects on human keratinocytes and melanoma HTB 1410 cells. Image cytometry study. Anticancer Res. 2003;23(1A):419–26.

84.

Kołcz J, Rajwa B, Drukała J, Dobrucki J, Korohoda W, Malec E. Three-dimensional visualization of Connexin 43 on the human cardiomyocytes. Appl Immunohistochem Mol Morphol. 2002;10(3):247–52. https://doi.org/10.1097/01.PAI.0000024462.81006.62

85.

Bugusu BA, Hamaker BR, Rajwa B. Interaction of maize zein with wheat gluten in composite dough and bread as determined by confocal laser scanning microscopy. Scanning. 2002;24(1):1–5. https://doi.org/10.1002/sca.4950240101

86.

Drukala J, Rajwa B, Pietrzkowski Z. Effect of daunomycin on expression of CD44H protein in HTB140 melanoma cells in vitro. Anticancer Res. 2001;21(6A):3793–8.

87.

Brightman AO, Rajwa BP, Sturgis JE, McCallister ME, Robinson JP, Voytik-Harbin SL. Time-lapse confocal reflection microscopy of collagen fibrillogenesis and extracellular matrix assembly in vitro. Biopolymers. 2000;54(3):222–34. https://doi.org/10.1002/1097-0282(200009)54:3<222::AID-BIP80>3.0.CO;2-K

88.

Tworzydlo M, Laczka M, Rajwa B, Dobrucki J, Turyna B. Evaluation of biocompatibility of apatite-wollastonite ceramics in fibroblast cultures. Folia Histochem Cytobiol. 2000;38(3):133–41.

Peer-reviewed conference reports

Chen Y, Calvert RD, Azad A, Rajwa B, Fleet J, Ratliff T, Pothen A. Phenotyping immune cells in tumor and healthy tissue using flow cytometry data. In: Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. New York, NY, USA: ACM; 2018. p. 73–8. (BCB ’18). https://doi.org/10.1145/3233547.3233583

Dundar M, Kou Q, Zhang B, He Y, Rajwa B. Simplicity of kmeans versus deepness of deep learning: a case of unsupervised feature learning with limited data. In: 2015 IEEE 14th International Conference on Machine Learning and Applications (ICMLA). Amsterdam: Elsevier Science BV; 2015. p. 883–8. https://doi.org/10.1109/ICMLA.2015.78

Yerebakan HZ, Rajwa B, Dundar M. The infinite mixture of infinite Gaussian mixtures. In: Ghahramani Z, Welling M, Cortes C, Lawrence ND, Weinberger KQ, editors. Advances in Neural Information Processing Systems 27. Curran Associates, Inc.; 2014. p. 28–36. http://papers.nips.cc/paper/5299-the-infinite-mixture-of-infinite-gaussian-mixtures.pdf

Dundar M, Yerebakan HZ, Rajwa B. Batch discovery of recurring rare classes toward identifying anomalous samples. In: Proceedings of the 20th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. New York, NY, USA: ACM; 2014. p. 223–32. (KDD ’14). https://doi.org/10.1145/2623330.2623695

Benson AR, Lee JD, Rajwa B, Gleich DF. Scalable methods for nonnegative matrix factorizations of near-separable tall-and-skinny matrices. In: Ghahramani Z, Welling M, Cortes C, Lawrence ND, Weinberger KQ, editors. Advances in Neural Information Processing Systems 27 (NIPS 2014). La Jolla: Neural Information Processing Systems (NIPS); 2014.

Dundar M, Li L, Rajwa B. Partially-observed models for classifying minerals on Mars. In: 2013 5th Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS). 2013. p. 1–4. https://doi.org/10.1109/WHISPERS.2013.8080750

Akova F, Dundar M, Qi Y, Rajwa B. Self-adjusting models for semi-supervised learning in partially observed settings. In: 2012 IEEE 12th International Conference on Data Mining (ICDM). 2012. p. 21–30. https://doi.org/10.1109/ICDM.2012.60

Dundar M, Akova F, Qi A, Rajwa B. Bayesian nonexhaustive learning for online discovery and modeling of emerging classes. In: 29th International Conference on Machine Learning (ICML 2012). Edinburgh, Scotland; 2012.

Akova F, Hirleman D, Bhunia AK, Rajwa B, Dundar MM. Non-exhaustive learning for bacteria detection. In: Network-Based Information Systems, International Conference on. Los Alamitos, CA, USA: IEEE Computer Society; 2009. p. 206–11. https://doi.org/10.1109/NBiS.2009.79

10.

Dundar MM, Hirleman ED, Bhunia AK, Robinson JP, Rajwa B. Learning with a non-exhaustive training dataset. A case study: detection of bacteria cultures using optical-scattering technology. In: Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Paris, France: ACM; 2009. p. 279–88. https://doi.org/10.1145/1557019.1557055

11.

Ahmed W, Bayraktar B, Bhunia A, Hirleman E, Robinson J, Rajwa B. Rapid detection and classification of bacterial contamination using grid computing. Proceedings of the 7th IEEE International Symposium on Bioinformatics. 2007;286–93.

Book chapters

Grégori G, Rajwa B, Patsekin V, Jones J, Furuki M, Yamamoto M, Paul Robinson J. Hyperspectral cytometry. In: Fienberg HG, Nolan GP, editors. High-Dimensional Single Cell Analysis: Mass Cytometry, Multi-parametric Flow Cytometry and Bioinformatic Techniques. Berlin, Heidelberg: Springer; 2014. p. 191–210. (Current Topics in Microbiology and Immunology). https://doi.org/10.1007/82_2013_359

Arun K. Bhunia, Euiwon Bae, Bartek Rajwa, J. Paul Robinson, E. Daniel Hirleman. Utilization of optical forward scatter image biological database: foodborne pathogen colony differentiation and detection. In: Yan EX, Juneja EVK, Fratamico EPM, Smith EJL, Yan X, Juneja VK, et al., editors. Omics, Microbial Modeling and Technologies for Foodborne Pathogens. DEStech Publications, Inc.; 2012.

Rajwa B. Modern confocal microscopy. Curr Protoc Cytom. 2005;Chapter 12:Unit 12.3. https://doi.org/10.1002/0471142956.cy1203s31

Voytik-Harbin SL, Rajwa B, Robinson JP. Three-dimensional imaging of extracellular matrix and extracellular matrix-cell interactions. Methods Cell Biol. 2001;63:583–97.

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